View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5625_low_8 (Length: 463)
Name: NF5625_low_8
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 16989934 - 16990376
Alignment:
| Q |
1 |
cttgcatgttttctctttttctcatctccatcttcagattcccctcctccggctatcttctcgtacaaactgtaactgattcccagaatgctcttggctt |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989934 |
cttgcacgttttctctttttctcatctccatctccatattcccctcctccggctatcttctcgtacaaactgtaactgattcccagaatgctcttggctt |
16990033 |
T |
|
| Q |
101 |
taaaccacgaaatcagtttcatcatccgcgtctcctctgtactttgccgtgtattagaccaattatttgcattaacaacatcgtcatgatctttaacaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
16990034 |
taaaccacgaaatcagtttcatcatccgcgtctcctctgtactttgccgtgtattagaccaattatttgcattaaaaacatcttcatgatctttaacaga |
16990133 |
T |
|
| Q |
201 |
taactcagagttgttcaaattgtgaaatggaacacctatttcccactttttgaactcatattcccaagtaagcaacaaacttgcaggtgcaacaataatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16990134 |
taactcagagttgttcaaattgtgaaatggaacacctatttcccactttttgaactcatattcccaagtaagcaacaaacttgcaggtgcaacaataatc |
16990233 |
T |
|
| Q |
301 |
ggcaagcatctcggaaaaactttcaaatacgccttgagaaactctattgtcaaccttgtcttaccagttccaggagcatgtgaaataatgcagccacctt |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16990234 |
ggcaagcatcccggaaaaactttcaaatacgccttgagaaactctattgtcaaccttgtcttaccagttccaggagcatgtgaaataatgcagccacctt |
16990333 |
T |
|
| Q |
401 |
cccttcgaggatcggcattcttcaacttttgaagctcaatgtt |
443 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
16990334 |
cccttcgaggatcggcattctttaacttttgaagctcaatgtt |
16990376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 16965745 - 16966162
Alignment:
| Q |
1 |
cttgcatgttttctctttttctcatctccatcttcagattcccc---tcctccggctatcttctcgtacaaactgtaactgattcccagaatgctcttgg |
97 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| ||| ||||||| |||||| |||| |||||||||||||||||||||||| || |||||||| | |
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|
| T |
16965745 |
cttgcttgttttctctttttctcatcttcatcatcacattccccccctcctccagctagcttctcgtacaaactgtaactgatcccgagaatgctacttt |
16965844 |
T |
|
| Q |
98 |
ctttaaaccacgaaatcagtttcatcatccgcgtctcctctgtactttgccgtgtattagaccaattatttgcattaacaacatcgtcatgatctttaac |
197 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || |||| |||||| |||||||||||||| |||||| |||| |||| |||||| | |
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|
| T |
16965845 |
ctttgtaccacgaaatcagtttcaccatccgcgttgtatccttactaggccgtgcattagaccaattatgcaaattaacggcatcaccatgctctttacc |
16965944 |
T |
|
| Q |
198 |
agataactcagagttgttcaaattgtgaaatggaacacctatttcccactttttgaactcatattcccaagtaagcaacaaacttgcaggtgcaacaata |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || | ||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
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|
| T |
16965945 |
ggataactcaagattgttcaaattgtgaaatggaactccaacgtcccattttttgaactcatcttcccaagtaagtaacaaactcgcaggtgcaacaata |
16966044 |
T |
|
| Q |
298 |
atcggcaagcatctcggaaaaactttcaaatacgccttgagaaactctattgtcaaccttgtcttaccagttccaggagcatgtgaaataatgcagccac |
397 |
Q |
| |
|
| ||||||||| | ||||| ||||||| ||| | | |||||||| ||| |||||||||||||| || ||||| |||||||| || ||||||||||||| |
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|
| T |
16966045 |
acgggcaagcatttaggaaacactttcagatatgacatgagaaacattatagtcaaccttgtctttccggttccgggagcatgggagataatgcagccac |
16966144 |
T |
|
| Q |
398 |
cttcccttcgaggatcgg |
415 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
16966145 |
cctccctgcgaggatcgg |
16966162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 43 - 428
Target Start/End: Original strand, 17005507 - 17005886
Alignment:
| Q |
43 |
cctcctccggctatcttctcgtacaaactgtaactgattcccagaatgctcttggctttaaaccacgaaatcagtttcatcatccgcgtctcctctgtac |
142 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| | || ||| |
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|
| T |
17005507 |
cctcctccggctagcttcatgtacaaactgtaactgattccaagaatgctcttttctttgtaccacgaaatcagtttcaccatccgcattgtatccatac |
17005606 |
T |
|
| Q |
143 |
tttgccgtgtattagaccaattatttgcattaacaacatcgtcatgatctttaacagataactcagagttgttcaaattgtgaaatggaacacctatttc |
242 |
Q |
| |
|
| ||| ||| ||||||||||||| |||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| | || |
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|
| T |
17005607 |
tatgctgtgaattagaccaattaagcaaattaacaacatcatcatgcactttaccagataactcaggattgttcaaattgtgaaatggaa------tgtc |
17005700 |
T |
|
| Q |
243 |
ccactttttgaactcatattcccaagtaagcaacaaacttgcaggtgcaacaataatcggcaagcatctcggaaaaactttcaaatacgccttgagaaac |
342 |
Q |
| |
|
||| ||||||||||| | |||||||||| | |||||||| ||||| |||||||||| |||||||||| |||| || ||||||||||| ||| ||||||| |
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|
| T |
17005701 |
ccattttttgaactcttcttcccaagtatgtaacaaactcgcaggagcaacaataaccggcaagcatttcgggaatactttcaaataagccatgagaaat |
17005800 |
T |
|
| Q |
343 |
tctattgtcaaccttgtcttaccagttccaggagcatgtgaaataatgcagccaccttcccttcgaggatcggcattcttcaactt |
428 |
Q |
| |
|
||| |||| ||||||||| || |||||||||||||| ||||||||||||||||| ||||| | |||| |||| ||||| ||||| |
|
|
| T |
17005801 |
actacagtcagccttgtctttccggttccaggagcatgggaaataatgcagccaccctccctgcaaggaacggctttctttaactt |
17005886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 41 - 412
Target Start/End: Original strand, 16821728 - 16822099
Alignment:
| Q |
41 |
cccctcctccggctatcttctcgtacaaactgtaactgattcccagaatgctcttggctttaaaccacgaaatcagtttcatcatccgcgtctcctctgt |
140 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||| || || | |
|
|
| T |
16821728 |
ccccttctccggctagcttctcgtacaaattgtaactgattcccagaatgctcttttctttgtaccaagaaatcagtttcaccatccgtgttgtatcctt |
16821827 |
T |
|
| Q |
141 |
actttgccgtgtattagaccaattatttgcattaacaacatcgtcatgatctttaacagataactcagag-ttgttcaaattgtgaaatggaacacctat |
239 |
Q |
| |
|
||| |||| |||||||||||||| || |||| |||| ||||| |||||| | ||||| | ||| ||||||||||||||||||||||| || || |
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|
| T |
16821828 |
actaagccgcttattagaccaattaacaaaatcaacagcatcatcatgctctttaccggataattt-gagattgttcaaattgtgaaatggaactccaat |
16821926 |
T |
|
| Q |
240 |
ttcccactttttgaactcatattcccaagtaagcaacaaacttgcaggtgcaacaataatcggcaagcatctcggaaaaactttcaaatacgccttgaga |
339 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| |||||||| ||||| |||||||||| |||||||||| | ||||| ||||||| ||| | | ||||| |
|
|
| T |
16821927 |
gtcccattttttgaactcatcttcccaagtaagtaacaaactcgcaggagcaacaataaccggcaagcatttaggaaacactttcagatatgacatgaga |
16822026 |
T |
|
| Q |
340 |
aactctattgtcaaccttgtcttaccagttccaggagcatgtgaaataatgcagccaccttcccttcgaggat |
412 |
Q |
| |
|
||| ||| |||||||||||||| || ||||| |||||||| || |||||||||||||| ||||| ||||||| |
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|
| T |
16822027 |
aacattatagtcaaccttgtctttccggttccgggagcatgggagataatgcagccaccctccctgcgaggat |
16822099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 185 - 436
Target Start/End: Complemental strand, 10603759 - 10603508
Alignment:
| Q |
185 |
catgatctttaacagataactcagagttgttcaaattgtgaaatggaacacctatttcccactttttgaactcatattcccaagtaagcaacaaacttgc |
284 |
Q |
| |
|
|||| |||||| |||||||||| | ||| | ||||||||||||||||| || || ||||| || ||||| |||| |||||||| || | | ||| || |
|
|
| T |
10603759 |
catgctctttaccagataactcgggattgcttaaattgtgaaatggaactccaatgtcccatttcttgaattcatcctcccaagttagtagtatactagc |
10603660 |
T |
|
| Q |
285 |
aggtgcaacaataatcggcaagcatctcggaaaaactttcaaatacgccttgagaaactctattgtcaaccttgtcttaccagttccaggagcatgtgaa |
384 |
Q |
| |
|
||| || |||||||||||||||||| | ||||| |||||||||| |||||||||||| |||| |||| ||||||||| || || ||||||||||| ||| |
|
|
| T |
10603659 |
aggagcgacaataatcggcaagcatttgggaaaggctttcaaatatgccttgagaaacactatggtcagccttgtctttccggtaccaggagcatgagaa |
10603560 |
T |
|
| Q |
385 |
ataatgcagccaccttcccttcgaggatcggcattcttcaacttttgaagct |
436 |
Q |
| |
|
||||||||||||||||| || | ||||||| ||||||| ||||||||||||| |
|
|
| T |
10603559 |
ataatgcagccaccttcactgcaaggatcgacattctttaacttttgaagct |
10603508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 438
Target Start/End: Original strand, 16974841 - 16975062
Alignment:
| Q |
217 |
aaattgtgaaatggaacacctatttcccactttttgaactcatattcccaagtaagcaacaaacttgcaggtgcaacaataatcggcaagcatctcggaa |
316 |
Q |
| |
|
||||||||||||||||| || || ||||| || ||||| |||| |||||||| || | | ||| ||||| || |||||||| ||||||||| | |||| |
|
|
| T |
16974841 |
aaattgtgaaatggaactccgatgtcccatttcttgaattcatcctcccaagttagtagtatactagcaggagcgacaataattggcaagcatttgggaa |
16974940 |
T |
|
| Q |
317 |
aaactttcaaatacgccttgagaaactctattgtcaaccttgtcttaccagttccaggagcatgtgaaataatgcagccaccttcccttcgaggatcggc |
416 |
Q |
| |
|
| |||||||||| |||||||||||| | || |||| ||||||||| || |||||||||||||| ||||| || || |||||||| || | | ||||| | |
|
|
| T |
16974941 |
aggctttcaaatatgccttgagaaacaccatggtcagccttgtctttccggttccaggagcatgagaaatgatacatccaccttcgctgcaaagatcgtc |
16975040 |
T |
|
| Q |
417 |
attcttcaacttttgaagctca |
438 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
16975041 |
attctttaacttttgaagctca |
16975062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 190 - 438
Target Start/End: Complemental strand, 35265262 - 35265014
Alignment:
| Q |
190 |
tctttaacagataactcagagttgttcaaattgtgaaatggaacacctatttcccactttttgaactcatattcccaagtaagcaacaaacttgcaggtg |
289 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||||||||| || || ||| | || ||||| |||| |||||||| || | | ||| ||||| | |
|
|
| T |
35265262 |
tctttaccagataactcgggattgtttaaattgtgaaatggaactccgatgtccaatttcttgaattcatcctcccaagttagtagtatactagcaggag |
35265163 |
T |
|
| Q |
290 |
caacaataatcggcaagcatctcggaaaaactttcaaatacgccttgagaaactctattgtcaaccttgtcttaccagttccaggagcatgtgaaataat |
389 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||| |||||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||| |
|
|
| T |
35265162 |
caacaataatcggcaagcatttgggaaaggctttcaaatatgccttgagaaacactatggtcagccttgtctttccggttccaggagcatgagaaataat |
35265063 |
T |
|
| Q |
390 |
gcagccaccttcccttcgaggatcggcattcttcaacttttgaagctca |
438 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
35265062 |
acagccaccttcgctggaaggatcggcattctttaacttttgaagctca |
35265014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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