View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_9 (Length: 448)
Name: NF5625_low_9
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 187 - 434
Target Start/End: Complemental strand, 31219934 - 31219687
Alignment:
| Q |
187 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaatgagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaa |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219934 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaa |
31219835 |
T |
|
| Q |
287 |
ttttatcaaaattttcaaggaacttaaaagtttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggggcttggg |
386 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31219834 |
ttttatgaaaattttcaaggaacttaaaagtttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggagcttggg |
31219735 |
T |
|
| Q |
387 |
aatcttcaccagcttgaaagactgtaagaccttttgtagaattcatct |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219734 |
aatcttcaccagcttgaaagactgtaagaccttttgtagaattcatct |
31219687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 187 - 431
Target Start/End: Complemental strand, 31182197 - 31181954
Alignment:
| Q |
187 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaatgagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaa |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||||| | |
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| T |
31182197 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtaga |
31182098 |
T |
|
| Q |
287 |
ttttatcaaaattttcaaggaacttaaaagtttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggggcttggg |
386 |
Q |
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|||||| |||| ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
31182097 |
ttttatgaaaactttcaagtaactt-aaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttggg |
31181999 |
T |
|
| Q |
387 |
aatcttcaccagcttgaaagactgtaagaccttttgtagaattca |
431 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
31181998 |
aatcttcaccagcttgaaagactgtaagctcctttgtagaattca |
31181954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 187 - 431
Target Start/End: Complemental strand, 31201238 - 31200995
Alignment:
| Q |
187 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaatgagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaa |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||||| | |
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| T |
31201238 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtaga |
31201139 |
T |
|
| Q |
287 |
ttttatcaaaattttcaaggaacttaaaagtttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggggcttggg |
386 |
Q |
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|||||| |||| ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
31201138 |
ttttatgaaaactttcaagtaactt-aaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttggg |
31201040 |
T |
|
| Q |
387 |
aatcttcaccagcttgaaagactgtaagaccttttgtagaattca |
431 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
31201039 |
aatcttcaccagcttgaaagactgtaagctcctttgtagaattca |
31200995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31182415 - 31182339
Alignment:
| Q |
16 |
caaacaactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttccccttaacc |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31182415 |
caaacaactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttccccttaacc |
31182339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31201456 - 31201380
Alignment:
| Q |
16 |
caaacaactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttccccttaacc |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31201456 |
caaacaactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttccccttaacc |
31201380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31220114 - 31220038
Alignment:
| Q |
16 |
caaacaactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttccccttaacc |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31220114 |
caaacaactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttccccttaacc |
31220038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 31247694 - 31247625
Alignment:
| Q |
20 |
caactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtatttcccctta |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| |
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| T |
31247694 |
caactaccttaatggtacaatccctccacaatggggttccatgcatcttgtcaatatgtatttcctctta |
31247625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 31236574 - 31236512
Alignment:
| Q |
20 |
caactaccttaatggtacaatccctccacaatggggttccatgaatcttgtcaacatgtattt |
82 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31236574 |
caactaccttaatggtacaatacctccacaatggggttccatgcatcttgtcaacatgtattt |
31236512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 414
Target Start/End: Complemental strand, 31235583 - 31235354
Alignment:
| Q |
188 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaatgagcttggaaacatcagcaccatgcaaaaattgtaagtaattttccc-atgtaaa |
286 |
Q |
| |
|
||||||||||| ||||||| || ||||| ||| |||| || || || |||||||| |||| |||| || ||| |||||||||||||| | || | || |
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|
| T |
31235583 |
gacagttcactattaggaaatcgtttaactggtccaattccaaaagaacttggaaaaatcaccaccctgaaaagcttgtaagtaatttttcttatctcaa |
31235484 |
T |
|
| Q |
287 |
ttttatcaaaattt-tcaaggaacttaaaagt-ttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggggcttg |
384 |
Q |
| |
|
|||| | ||||||| |||||||||||| || | ||||||| ||||||||||| |||| |||||||||| || |||||| | ||||| |||| ||||| |
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|
| T |
31235483 |
ttttttgaaaatttctcaaggaacttataaatattgaaacttgaaatgcatagggttctagagttcaatcaattttctggacagcttcctccggagcttg |
31235384 |
T |
|
| Q |
385 |
ggaatcttcaccagcttgaaagactgtaag |
414 |
Q |
| |
|
| |||||||| || |||||||||||||||| |
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|
| T |
31235383 |
gaaatcttcatcaacttgaaagactgtaag |
31235354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 414
Target Start/End: Complemental strand, 31247314 - 31247085
Alignment:
| Q |
187 |
tgacagttcactcataggaaaccgattaacgggttcaatcccgaatgagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaa |
286 |
Q |
| |
|
|||||||||||| ||||||| || ||||| ||| |||| || || || |||||||| |||| |||| || ||| ||||||||||||||| || | | |
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|
| T |
31247314 |
tgacagttcactattaggaaatcgtttaactggtccaattccaaaagaacttggaaaaatcatcaccctgaaaagcttgtaagtaattttcttatttcga |
31247215 |
T |
|
| Q |
287 |
ttttatcaaaattt-tcaaggaacttaaaagt-ttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggggcttg |
384 |
Q |
| |
|
|||| | |||||| |||||||||||| || | ||||||| ||||||||||| |||| |||||||||| ||||||||| | ||||| |||| ||||| |
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|
| T |
31247214 |
ttttttgaaaattgctcaaggaacttataattattgaaacttgaaatgcatagggttctagagttcaatcaattatctggacagcttcctccggagcttg |
31247115 |
T |
|
| Q |
385 |
ggaatcttcaccagcttgaaagactgtaag |
414 |
Q |
| |
|
| |||||||| | |||||||||||||||| |
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|
| T |
31247114 |
gaaatcttcatcgacttgaaagactgtaag |
31247085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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