View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5626-Insertion-10 (Length: 381)
Name: NF5626-Insertion-10
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 17985912 - 17986285
Alignment:
| Q |
8 |
gtttggagatggctagctactatgcttaactgtactatgcaatttcaaactaaagaggatgtttggtctctatgtaataaaggttggaatgcacaatgcc |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17985912 |
gtttggagatggctagctattatgcttaactgtactatgcaatttcaaactaaagaggatgtttggtctctatgtaataaaggttggaatgcacaatgcc |
17986011 |
T |
|
| Q |
108 |
aactagtggtgacttctgctttagttaatgtcttctgctcaatggtatgccaagaatcaattaaggttcaataacaaaaagattgattggagaacatctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17986012 |
aactagtggtgacttctgctttagttaatgtcttctgctcaatggtatgccaagaatcaattaaggttcaataacaaaaagattgattggagaacatctg |
17986111 |
T |
|
| Q |
208 |
tctcaaatatattatcttgtgcctccctatcaggtaacttaactggcaagaaagcttcttctgacatgagaaattttattgtcttaaagaaatttggtgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17986112 |
tctcaaatatattatcttgtgcctccctatcaggtaacttaactggcaagaaagcttcttctgacatgagaaattttattgtcttaaagaaatttggtgt |
17986211 |
T |
|
| Q |
308 |
cagtttgcatcccccaaatgcccctaaaattattgaggttgtgtggaaccctccaatctttaattggataaaat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17986212 |
cagtttgcatcccccaaatgcccctaaaattattgaggttgtgtggaaccctccaatctttaattggataaaat |
17986285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 20749729 - 20749355
Alignment:
| Q |
8 |
gtttggagatggctagctactatgcttaactgtactatgcaatttcaaactaaagaggatgtttggtctctatgtaataaaggttggaatgcacaatgcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20749729 |
gtttggagatggctagctactatgcttaattgtactatgcaatttcaatccaaagaggatgtctggtctctatgtaataaaggttggaatgcacaatgcc |
20749630 |
T |
|
| Q |
108 |
aactagtggtgacttctgctttagttaatgtcttctgctcaat--ggtatgccaagaa-tcaattaaggttcaataacaaaaagattgattggagaacat |
204 |
Q |
| |
|
|| | ||||||||||||||| |||| ||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20749629 |
aattggtggtgacttctgctctagtgaatgtattctgctcaatttggtatgccaggaaatcaattaaggttcaataacaaaaagattgattggagaacaa |
20749530 |
T |
|
| Q |
205 |
ctgtctcaaatatattatcttgtgcctccctatcaggtaacttaactggcaagaaagcttcttctgacatgagaaattttattgtcttaaagaaatttgg |
304 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
20749529 |
ctgtctcaaatatattatcttatgcctccctatcaggtaacttaactggtaagaaagcttcttctgacatgagaaacttcattgtcttaaagaagtttgg |
20749430 |
T |
|
| Q |
305 |
tgtcagtttgcatcccccaaatgcccctaaaattattgaggttgtgtggaaccctccaatctttaattggataaa |
379 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
20749429 |
tgtcagtttacaccccgcaaatgcccctaaaattattaaggttgtgtggaatcctccaatcttcaattggataaa |
20749355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 360
Target Start/End: Complemental strand, 8777791 - 8777669
Alignment:
| Q |
238 |
caggtaacttaactggcaagaaagcttcttctgacatgagaaattttattgtcttaaagaaatttggtgtcagtttgcatcccccaaatgcccctaaaat |
337 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||| |||||||| || ||||| |||||||| |||| ||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
8777791 |
caggtaacttaactagcaagaaagctcatactgatatgagaaacttcattgttttaaagaagtttgatgttagtattcatcctccaaatgcccctaaaat |
8777692 |
T |
|
| Q |
338 |
tattgaggttgtgtggaaccctc |
360 |
Q |
| |
|
||| || ||||||||||| |||| |
|
|
| T |
8777691 |
tatcgaagttgtgtggaatcctc |
8777669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 23632012 - 23631964
Alignment:
| Q |
333 |
aaaattattgaggttgtgtggaaccctccaatctttaattggataaaat |
381 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||| |||||||| |||| |
|
|
| T |
23632012 |
aaaattattgaggttatttggaatcctccaatcttcaattggatcaaat |
23631964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University