View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626-Insertion-3 (Length: 1060)
Name: NF5626-Insertion-3
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 870; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 870; E-Value: 0
Query Start/End: Original strand, 7 - 1034
Target Start/End: Complemental strand, 1856721 - 1855681
Alignment:
| Q |
7 |
accaaaacctcctttacctatgattaagctctcatcaaatttgttagtggctttccttagttcattttcttcgaaaatgtgagttatttgagacgagtct |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1856721 |
accaaaacctcctttacctatgattaagctctcatcaaatttgttagtggctttccttagttcattttcttcgaaaatgtgagttatttgagacgagtct |
1856622 |
T |
|
| Q |
107 |
ttcctttgacgaagtttatgttccaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtaaattaagtagg |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1856621 |
ttcctttgacgaagtttatgttccaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtaaattaagtagg |
1856522 |
T |
|
| Q |
207 |
aaattatgcacagaaatagaacaataaatactgctcctactcctgcatccaaaatatattgaacccaaattttggattgttccacaaactaatatcagta |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1856521 |
aaattatgcacagaaatagaacaataaatactgctcctactcctgcatccaaaatatattgaacccaaattttggattgttccacaaactaatatcagta |
1856422 |
T |
|
| Q |
307 |
tcatattta--actaaaa-tacataagattttaaaaaattgatcataaattaaaattaggtgtgttttgttgcttaccaaggacagttgttagtactatt |
403 |
Q |
| |
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|||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1856421 |
tcatatatataactaaaaatacataagattttaaaaaattgatcataaattaaaattaggtgtgttttgttgcttaccaaggacagttgttggtactatt |
1856322 |
T |
|
| Q |
404 |
tgatatgtatttcgatcaggtagttcgcatcctcctaacgttgttccatttccaaattgcgatttcggacagaaacaattgtaactcccaacagtgttat |
503 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1856321 |
tgatatgtatttcgatcaggtagtttgcatcctcctaaacttgttccatttccaaattgcgagttcggacagaaacaattgtaactcccaacagtgttat |
1856222 |
T |
|
| Q |
504 |
tacaatttgcttcacttaggcatgtatgatttgatgtcgcacattcattaatgtctgaaagacaataaaaagcatggttgtttgccggtcaaatcactag |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1856221 |
tacaatttgcttcacttaggcatgtatgatttgatgtcgcacattcattaatgtctgaaagacaataaaaagcatggttgtttgccggtcaaatcactag |
1856122 |
T |
|
| Q |
604 |
tttgtatgattctcatcataatacattgatgaatcccaattcacttcgatgaatcactaaatcactagtttaaaacgagtcacataattaagagaaacca |
703 |
Q |
| |
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| T |
1856121 |
tttgtatgattctcatcataatacattgatgaatcccaattcacttcgatgaatcactaaatcactagtttaaaacgagtcacataattaagagaaacca |
1856022 |
T |
|
| Q |
704 |
aattcaataaaacattgaagatatgaagcattatcaattaattaaactacaaaagnnnnnnnnnnnctgtgatttacaatcatgatatgt--ttgttacc |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
1856021 |
aattcaataaaacattgaagatatgaagcattatcaattaattaaactacaaaagaaaaagaaaaactgtgatttacaatcatgatatgtacttgttacc |
1855922 |
T |
|
| Q |
802 |
tctacagcctccgggaacgtatggatttccttc-aaacctgccaaacacttgcatctgtaaccgtcataatccgaatctttatcaacacattcgctattt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
1855921 |
tctacagcctccgggaacgtatggatttccttcaaaacctgccaaacacttgcatctgtaaccgtcataatctgaatctttatcaacacattcactattt |
1855822 |
T |
|
| Q |
901 |
tccttgcaggcatagctatttgtagtttgggctacttgacatgattca-ttgt-acaacccaattaacaaccatagggaaagtg-tat-aggcagtttc- |
995 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
1855821 |
tccttgcaggcatagctatttgtagtttgggctattcgacatgattcatttgtaacaacccaattaacaaccatagggaaagtgttataaggcagtttct |
1855722 |
T |
|
| Q |
996 |
tgatatgttctacagaaaaa-tataggat-cttgttttgca |
1034 |
Q |
| |
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| |||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
1855721 |
taatatgttctacagaaaaattataggatccttgttttgca |
1855681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 1816323 - 1816518
Alignment:
| Q |
7 |
accaaaacctcctttacctatgattaagctctcatcaaatttgttagtggctttccttagttcattttcttcgaaaatgtgagttatttgagacgagtct |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
1816323 |
accaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagctatttgagacgagtct |
1816422 |
T |
|
| Q |
107 |
ttcctttgacgaagtttatgttccaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtaaattaag |
202 |
Q |
| |
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| T |
1816423 |
tttctttgaagaagtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaatttccttctttggtatattaag |
1816518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 689 - 950
Target Start/End: Original strand, 1817162 - 1817419
Alignment:
| Q |
689 |
aattaagagaaaccaaattcaataaaacattgaagatatgaagcattatcaattaattaaactacaaaagnnnnnnnnnnnctgtgatttacaatcatga |
788 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| | ||| || ||| |
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| T |
1817162 |
aattaagaggaaccaaattcaataaaacattgaaaatatgaagcacaatcaattaattaaactgcaaaaacaaaaacagtggtacgat-----attatgc |
1817256 |
T |
|
| Q |
789 |
tatgtttgttacctctacagcctccgggaacgtatggatttccttcaaa-cctgccaaacacttgcatctgtaaccgtcataatccgaatctttatcaac |
887 |
Q |
| |
|
| |||||||||||| | |||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | ||| | ||| || |
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|
| T |
1817257 |
tttgtttgttacctgtgcagcctccaggaaggtatggatttccttcaaaaccttgtaaacacttgcatctgtaaccatcataatctggatcgtcatcgac |
1817356 |
T |
|
| Q |
888 |
acattcgctattttccttgcaggcatagctatttgtagtttgggctacttgacatgattcatt |
950 |
Q |
| |
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|||||| ||||||| ||||||||| |||||||||||||| || |||| ||||||||||||||| |
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| T |
1817357 |
acattcactatttttcttgcaggcgtagctatttgtagtgtgagctatttgacatgattcatt |
1817419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 1816528 - 1816609
Alignment:
| Q |
230 |
ataaatactgctcctactcctgcatccaaaatatattgaacccaaattttggattgttccacaaactaatatcagtatcata |
311 |
Q |
| |
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||||||| ||||||| |||||| || ||||||||||| || |||| |||||||||||||| || |||||||| |||| |||| |
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| T |
1816528 |
ataaataatgctcctgctcctgtattcaaaatatattaaatccaatttttggattgttccccagactaatattagtagcata |
1816609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 1842568 - 1842507
Alignment:
| Q |
143 |
ccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtaaattaagta |
204 |
Q |
| |
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||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| |||||||| |
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| T |
1842568 |
ccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaagta |
1842507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 95 - 385
Target Start/End: Complemental strand, 37567612 - 37567320
Alignment:
| Q |
95 |
tgagacgagtctttcctttgacgaagtttatgttccaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggt |
194 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37567612 |
tgagacgagtcttttctttgacgaagtttctgtttcaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggt |
37567513 |
T |
|
| Q |
195 |
aaattaagtaggaaattatgcacagaaatagaacaataaatactgctcctactcctgcatccaaaatatattgaacccaaattttggattgttccacaaa |
294 |
Q |
| |
|
| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
37567512 |
atattaagtaggatattatccacacaaatagaacaataaatactgctcctactcctgcatccgaaatattttgaacccaaattttggattgttccacaaa |
37567413 |
T |
|
| Q |
295 |
ctaatatcagtatcatatttaacta--aaatacataagattttaaaaaattgatcataaattaaaattaggtgtgttttgttgcttaccaagg |
385 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37567412 |
ctaatatcagtagcatatataactaataaatacataaattttttaaaaaatgattataaattaaaattaggtgtgttttgttgcttaccaagg |
37567320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 37567319 - 37567216
Alignment:
| Q |
409 |
tgtatttcgatcaggtagttcgcatcctcctaacgttgttccatttccaaattgcgatttcggacagaaacaattgtaactcccaacagtgttattacaa |
508 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||| ||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| |
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| T |
37567319 |
tgtatttccatcaggtagtttgcaccctcctaaccttgttccatttccgaattgttcgatcagacagaaacaattgtaattcccaacagtgttattacaa |
37567220 |
T |
|
| Q |
509 |
tttg |
512 |
Q |
| |
|
|||| |
|
|
| T |
37567219 |
tttg |
37567216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 37567220 - 37567166
Alignment:
| Q |
532 |
atttgatgtcgcacattcattaatgtctgaaagacaataaaaagcatggttgttt |
586 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37567220 |
atttgatgtcacacattcgttaatgtctgaaagacaataaaaagcatggttgttt |
37567166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 37567663 - 37567612
Alignment:
| Q |
7 |
accaaaacctcctttacctatgattaagctctcatcaaatttgttagtggct |
58 |
Q |
| |
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||||||||||||| |||||||| ||||| |||||||||| |||||||||||| |
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| T |
37567663 |
accaaaacctcctctacctatggttaagttctcatcaaagttgttagtggct |
37567612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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