View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626-Insertion-4 (Length: 773)
Name: NF5626-Insertion-4
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 7 - 773
Target Start/End: Original strand, 23179761 - 23180536
Alignment:
| Q |
7 |
acttggaggaacccaaattagcctcccaatagtaaaacctttcgtacgcggtttccatgaccttttcctcttatcatatgcaaatttagaaacaaactga |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179761 |
acttggaggaacccaaattagcctcccaatagtataacctttcatacgcggtttccatgaccttttcctcttatcatatgcaaatttagaaacaaactga |
23179860 |
T |
|
| Q |
107 |
gcatacgtcaaattcttggcttgaggataaatcttgtttgcctgcatccaagatgtaaacattgattcagtgacacttggcttcaacaggacatcatcaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179861 |
gcatacgtcaaattcttggcttgaggataaatcttgtttgcttgcatccaagatgtaaacattgattcagtgacacttggcttcaacaggacatcatcaa |
23179960 |
T |
|
| Q |
207 |
tatgctcataatcgttaaagtaaaccggttgttcgcctggaatatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179961 |
tatgctcataatcgttaaagtaaaccggttgttcgcctggaatatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaat |
23180060 |
T |
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| Q |
307 |
tctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaatgttaccactttgagttgaatctctgtcttgtgttgga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180061 |
tctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaatgttaccactttgagttgaatctctgtcttgtgttgga |
23180160 |
T |
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| Q |
407 |
tcaacaacggctgttatcctaccataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctacactattccacattgatatgtgctt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23180161 |
tcaacaacggctgttatcctaccataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctacaccattccacattgatatgtgctt |
23180260 |
T |
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| Q |
507 |
ggtacttcattagcaacgtagggttatatggtacaatatgtttgttattgagtgaaacaccattcttgacaattgtgttaccattgtctcttcgtctata |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
23180261 |
ggtacttcattagcaacgtagggttatatggtacaatatgtttgttattgagtgaaacaccgttcttgacaattgtgttaccattgtctcttcgtctgta |
23180360 |
T |
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| Q |
607 |
cactggataaccttctttgtcaacaattgttgagttctgatacgtcttagggtagtattttgtgcattttccatctttcatgcaaggtgat--------- |
697 |
Q |
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| T |
23180361 |
caccggataaccttctttgtcaacaattgttgagttctgatacttcttagggtagtactttgtgcattttccatctttcatgcaaggtgatgatttatga |
23180460 |
T |
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| Q |
698 |
gacaaaccacatggaccatggatcatatgatttttaaccaaattatacaactctttctcatgttcctgattgggta |
773 |
Q |
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| T |
23180461 |
gataaaccacatggaccatggatcatatgatttttaaccaaattatacaactctttctcatgttcctgattgggta |
23180536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 250 - 369
Target Start/End: Original strand, 116392 - 116511
Alignment:
| Q |
250 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
349 |
Q |
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||||||||||| | ||| || |||||||| | |||||| |||||||| || || |||||||||| |||||||| ||| || | |||||||||||| || |
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| T |
116392 |
atgaaagaacatacgttcgaccgctggctttctaccatgaattggaaaagagaacattctccaacttgcttcacttggagaaatatacctacaatctaaa |
116491 |
T |
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| Q |
350 |
tattgtttgatctcatcaat |
369 |
Q |
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||||| |||||||||||||| |
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| T |
116492 |
tattgcttgatctcatcaat |
116511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 151506 - 151624
Alignment:
| Q |
248 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
347 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
151506 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
151605 |
T |
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| Q |
348 |
agtattgtttgatctcatc |
366 |
Q |
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| T |
151606 |
ggtattgtttgatttcatc |
151624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 18060486 - 18060604
Alignment:
| Q |
248 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
347 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
18060486 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
18060585 |
T |
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| Q |
348 |
agtattgtttgatctcatc |
366 |
Q |
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|||||||||||| ||||| |
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| T |
18060586 |
ggtattgtttgatttcatc |
18060604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 22065434 - 22065490
Alignment:
| Q |
283 |
accatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacct |
339 |
Q |
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|||||| |||||||||||||| |||||||||| |||||||| ||| || |||||||| |
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| T |
22065434 |
accatgaattggaaatgaaaacattctccaacttgcttcacttggagaaacatacct |
22065490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 22072342 - 22072406
Alignment:
| Q |
304 |
aattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaa |
368 |
Q |
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||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| || ||||||| |
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| T |
22072342 |
aattctccaacatgcctcacttggtgatatatacctacaatccaagtattgttttatttcatcaa |
22072406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 368
Target Start/End: Original strand, 124877 - 124995
Alignment:
| Q |
250 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
349 |
Q |
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||||||||||| | ||||| ||||| || ||||||||||| | || ||||| |||||||||||||| |||| |||||| ||||| ||||||| || | |
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| T |
124877 |
atgaaagaacatgcgctcaacagctggtttacgaccatgtatggagaaagaaaatattctccaacatgcctcacttggtgaaacatatctacaataaatg |
124976 |
T |
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| Q |
350 |
tattgtttgatctcatcaa |
368 |
Q |
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|| |||||||| ||||||| |
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| T |
124977 |
tactgtttgatttcatcaa |
124995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 22320338 - 22320258
Alignment:
| Q |
151 |
catccaagatgtaaacattgattcagtgacacttggcttcaacaggacatcatcaatatgctcataatcgttaaagtaaac |
231 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| | || |||||| |||| ||||||| ||| ||| ||||||| |
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| T |
22320338 |
catccaagaggtaaacattgattcagttacacttggcttaaggagaacatcaccaatttgctcatgatctttatagtaaac |
22320258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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