View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5626-Insertion-5 (Length: 725)

Name: NF5626-Insertion-5
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5626-Insertion-5
NF5626-Insertion-5
[»] chr1 (30 HSPs)
chr1 (303-570)||(44278222-44278489)
chr1 (529-725)||(49480821-49481014)
chr1 (7-146)||(44277205-44277344)
chr1 (619-725)||(44278489-44278595)
chr1 (623-725)||(17030253-17030360)
chr1 (463-529)||(15071359-15071425)
chr1 (465-525)||(15072825-15072885)
chr1 (463-529)||(46111521-46111587)
chr1 (463-529)||(52628906-52628972)
chr1 (529-582)||(12361523-12361575)
chr1 (478-529)||(14470873-14470924)
chr1 (463-530)||(42245920-42245987)
chr1 (463-529)||(24499688-24499754)
chr1 (145-195)||(44278064-44278114)
chr1 (467-520)||(35943484-35943537)
chr1 (463-529)||(34351989-34352055)
chr1 (467-520)||(45585046-45585099)
chr1 (463-524)||(46467168-46467229)
chr1 (463-520)||(50444731-50444788)
chr1 (465-529)||(15746801-15746865)
chr1 (693-725)||(21825762-21825794)
chr1 (440-520)||(27814318-27814398)
chr1 (465-524)||(42244653-42244712)
chr1 (326-388)||(6049291-6049353)
chr1 (354-388)||(9226109-9226143)
chr1 (482-524)||(16963856-16963898)
chr1 (482-520)||(52627541-52627579)
chr1 (463-524)||(46318650-46318711)
chr1 (467-524)||(46468756-46468813)
chr1 (464-529)||(51042376-51042441)
[»] chr4 (37 HSPs)
chr4 (529-725)||(18140991-18141184)
chr4 (529-725)||(26760313-26760512)
chr4 (303-529)||(42872172-42872398)
chr4 (332-529)||(31968293-31968491)
chr4 (7-98)||(42871818-42871910)
chr4 (463-529)||(390234-390300)
chr4 (463-525)||(2310944-2311006)
chr4 (328-389)||(15449942-15450003)
chr4 (463-520)||(1188869-1188926)
chr4 (463-520)||(27850965-27851022)
chr4 (326-390)||(7053363-7053427)
chr4 (463-530)||(53432078-53432145)
chr4 (463-529)||(42871112-42871178)
chr4 (463-525)||(52963590-52963652)
chr4 (463-520)||(1829779-1829836)
chr4 (463-520)||(6349586-6349643)
chr4 (463-523)||(1831296-1831356)
chr4 (465-520)||(27847704-27847759)
chr4 (463-530)||(31965851-31965918)
chr4 (52-98)||(33352479-33352525)
chr4 (463-525)||(40792772-40792834)
chr4 (463-520)||(393671-393728)
chr4 (463-520)||(6348181-6348238)
chr4 (463-520)||(24426365-24426422)
chr4 (327-388)||(28590771-28590832)
chr4 (53-98)||(31967850-31967895)
chr4 (463-520)||(37882860-37882917)
chr4 (465-520)||(4129019-4129074)
chr4 (440-520)||(44503689-44503768)
chr4 (469-520)||(52239903-52239954)
chr4 (463-530)||(53435786-53435853)
chr4 (463-520)||(11968537-11968594)
chr4 (478-529)||(42810251-42810302)
chr4 (440-520)||(44501544-44501624)
chr4 (479-525)||(49344059-49344105)
chr4 (463-529)||(54485578-54485644)
chr4 (463-520)||(2312515-2312572)
[»] chr8 (29 HSPs)
chr8 (304-529)||(26696549-26696774)
chr8 (424-529)||(8570135-8570240)
chr8 (303-389)||(45281031-45281117)
chr8 (463-520)||(22551033-22551090)
chr8 (326-390)||(34504540-34504604)
chr8 (463-529)||(41629725-41629791)
chr8 (303-389)||(4810653-4810739)
chr8 (464-530)||(45437516-45437582)
chr8 (465-526)||(42870833-42870894)
chr8 (463-520)||(44076396-44076453)
chr8 (467-517)||(4810498-4810548)
chr8 (463-529)||(32797155-32797221)
chr8 (463-520)||(32798565-32798622)
chr8 (463-529)||(17702308-17702374)
chr8 (467-525)||(32693851-32693909)
chr8 (463-529)||(38696325-38696391)
chr8 (467-524)||(41743652-41743709)
chr8 (463-524)||(42877641-42877702)
chr8 (463-515)||(29104398-29104450)
chr8 (330-389)||(416441-416500)
chr8 (473-520)||(32695318-32695365)
chr8 (494-529)||(42878880-42878915)
chr8 (481-530)||(211611-211660)
chr8 (481-530)||(240596-240645)
chr8 (481-530)||(725234-725283)
chr8 (481-530)||(793951-794000)
chr8 (463-520)||(30787633-30787690)
chr8 (463-520)||(45279706-45279763)
chr8 (469-530)||(45394983-45395044)
[»] chr7 (33 HSPs)
chr7 (303-529)||(45454055-45454282)
chr7 (10-98)||(45454724-45454813)
chr7 (463-529)||(30333302-30333368)
chr7 (463-529)||(30334670-30334736)
chr7 (463-520)||(32602959-32603016)
chr7 (463-520)||(47456408-47456465)
chr7 (440-529)||(4300058-4300147)
chr7 (473-529)||(40509777-40509833)
chr7 (463-526)||(47060508-47060571)
chr7 (463-529)||(40508395-40508461)
chr7 (479-529)||(43459472-43459522)
chr7 (463-529)||(45455405-45455471)
chr7 (463-529)||(47059125-47059191)
chr7 (465-530)||(38539687-38539752)
chr7 (328-389)||(40811508-40811569)
chr7 (463-520)||(47454363-47454420)
chr7 (473-520)||(11344533-11344580)
chr7 (473-520)||(22115207-22115254)
chr7 (463-529)||(30311502-30311568)
chr7 (465-523)||(41079870-41079927)
chr7 (463-520)||(32255015-32255072)
chr7 (463-520)||(32256428-32256485)
chr7 (464-529)||(33779118-33779183)
chr7 (100-145)||(45454593-45454638)
chr7 (327-388)||(46201319-46201380)
chr7 (440-529)||(4298730-4298819)
chr7 (482-530)||(24281090-24281138)
chr7 (478-529)||(30310138-30310189)
chr7 (463-530)||(40812646-40812713)
chr7 (463-518)||(43460856-43460911)
chr7 (463-520)||(6173483-6173540)
chr7 (467-524)||(25533210-25533267)
chr7 (328-369)||(41078931-41078972)
[»] chr3 (24 HSPs)
chr3 (303-529)||(36176379-36176606)
chr3 (463-525)||(34818107-34818169)
chr3 (463-529)||(18458690-18458756)
chr3 (424-527)||(53421755-53421858)
chr3 (463-520)||(53194903-53194960)
chr3 (326-390)||(28909473-28909537)
chr3 (463-529)||(12108016-12108082)
chr3 (463-529)||(40244204-40244270)
chr3 (463-529)||(53420333-53420399)
chr3 (463-520)||(18197173-18197230)
chr3 (463-520)||(37735332-37735389)
chr3 (463-520)||(38242549-38242606)
chr3 (473-520)||(38240932-38240979)
chr3 (463-525)||(24403260-24403322)
chr3 (463-529)||(37736114-37736180)
chr3 (465-525)||(3208505-3208565)
chr3 (481-525)||(18442273-18442317)
chr3 (481-525)||(19487347-19487391)
chr3 (330-390)||(44182450-44182510)
chr3 (467-529)||(3455662-3455724)
chr3 (463-529)||(20288257-20288323)
chr3 (463-525)||(28909638-28909700)
chr3 (463-529)||(53187576-53187641)
chr3 (463-520)||(53624394-53624451)
[»] chr5 (18 HSPs)
chr5 (463-529)||(22047749-22047815)
chr5 (463-529)||(22049169-22049235)
chr5 (467-525)||(30857821-30857879)
chr5 (463-525)||(39605502-39605564)
chr5 (463-529)||(1010397-1010463)
chr5 (463-520)||(325218-325275)
chr5 (463-520)||(39603879-39603936)
chr5 (326-389)||(27705182-27705244)
chr5 (440-520)||(30859182-30859262)
chr5 (463-529)||(8521272-8521338)
chr5 (463-520)||(27705349-27705406)
chr5 (471-529)||(8523787-8523845)
chr5 (482-529)||(20538070-20538117)
chr5 (469-527)||(1009203-1009261)
chr5 (463-525)||(26047834-26047896)
chr5 (468-524)||(9169608-9169665)
chr5 (463-520)||(32757851-32757908)
chr5 (487-520)||(41798004-41798037)
[»] chr2 (24 HSPs)
chr2 (303-389)||(6030312-6030398)
chr2 (463-525)||(17460717-17460779)
chr2 (463-520)||(7437794-7437851)
chr2 (473-529)||(32470618-32470674)
chr2 (463-530)||(43033098-43033165)
chr2 (463-529)||(11315950-11316016)
chr2 (463-529)||(28561385-28561451)
chr2 (463-520)||(11317401-11317458)
chr2 (328-388)||(30748667-30748727)
chr2 (463-529)||(17459270-17459336)
chr2 (463-529)||(34512831-34512897)
chr2 (463-529)||(36010594-36010660)
chr2 (463-520)||(2277502-2277559)
chr2 (465-526)||(30749328-30749389)
chr2 (463-524)||(35903530-35903591)
chr2 (330-390)||(2384358-2384418)
chr2 (326-388)||(30749190-30749253)
chr2 (482-520)||(7436493-7436531)
chr2 (328-390)||(34513421-34513483)
chr2 (354-388)||(42641754-42641788)
chr2 (466-520)||(42641896-42641950)
chr2 (463-520)||(28562842-28562899)
chr2 (479-520)||(32469174-32469215)
chr2 (463-520)||(43034504-43034561)
[»] scaffold0031 (2 HSPs)
scaffold0031 (440-520)||(123995-124075)
scaffold0031 (463-520)||(125266-125323)
[»] scaffold0002 (1 HSPs)
scaffold0002 (534-585)||(233920-233971)
[»] scaffold0077 (2 HSPs)
scaffold0077 (463-525)||(52613-52675)
scaffold0077 (463-520)||(54218-54275)
[»] scaffold0011 (1 HSPs)
scaffold0011 (463-529)||(127450-127516)
[»] chr6 (6 HSPs)
chr6 (463-529)||(6452544-6452610)
chr6 (463-520)||(34023912-34023969)
chr6 (473-520)||(7310302-7310349)
chr6 (463-529)||(6452301-6452367)
chr6 (463-520)||(27082177-27082234)
chr6 (463-520)||(34024097-34024154)
[»] scaffold0118 (1 HSPs)
scaffold0118 (463-520)||(43608-43665)
[»] scaffold2071 (1 HSPs)
scaffold2071 (463-525)||(714-776)
[»] scaffold0034 (1 HSPs)
scaffold0034 (463-529)||(109778-109844)
[»] scaffold0265 (2 HSPs)
scaffold0265 (693-725)||(2127-2159)
scaffold0265 (693-725)||(7016-7048)
[»] scaffold0013 (1 HSPs)
scaffold0013 (326-390)||(32758-32824)
[»] scaffold1251 (1 HSPs)
scaffold1251 (463-520)||(1118-1175)
[»] scaffold0078 (1 HSPs)
scaffold0078 (463-520)||(18838-18895)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-117; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 303 - 570
Target Start/End: Original strand, 44278222 - 44278489
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaagtgaaggaccat 402  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44278222 tgttgttgacttacggaaggtagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaatagtttaaattaaaaaagtgaaggaccat 44278321  T
Q  403 cactaacaaaacttttattgttttgacagaaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaa 502  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||||||| |||       |||||||||||||| |||||||||||||||||||||||||    
T  44278322 cactaacagaacttttattattttgacagaaaggatctatttggcaaacggagaaaaaaatgagggaccaaaacgtacgttttattaatcgtgggaccaa 44278421  T
Q  503 aataaaaacttgaaattaattaggggatgtctatgatctcttcccaaaccaaacatgaatctttcaat 570  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44278422 aatgaaaacttgaaattaattaggggatgtctatgatctcttcccaaaccaaacatgaatctttcaat 44278489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 529 - 725
Target Start/End: Complemental strand, 49481014 - 49480821
Alignment:
Q  529 atgtctatgatctcttcccaaaccaaacatgaatctttcaattcatttggctctcacactcaattccttataggaaatttccctatattctcgaatgagc 628  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49481014 atgtctatgatctcttcccgaaccaaacatgaatctttcaattcatttggctctcacactcaattccttataggaaatttccctatattatcgaatgagc 49480915  T
Q  629 atatcctcttttctctatttctaaaaatcatcttgaaaatgatgattaccaatacaagattaaaa---ttggaggactcttctgaccaaacaaataattg 725  Q
     |||||||||||||||||||||||||   |||||||||   ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  49480914 ctatcctcttttctctatttctaaaa---atcttgaaa---atgattaccaatacaagattaaaatatttggaggactcttctgaccaaacaaataattg 49480821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 44277205 - 44277344
Alignment:
Q  7 atcttcctcatcctgcttcatcgctttcttctttccccactttacaccatcaattccggcgaaatccacaaccaccaacagttccggcgaaacggggtta 106  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44277205 atcttcctcatcctgcttcatcgctttcttctttccccaccttacaccatcaattccggcgaaatccacaaccaccaacagttccggcgaaatggggtta 44277304  T
Q  107 ccttaatttatctctttttatctgtatatttgatacaaag 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44277305 ccttaatttatctctttttatctgtatatttgatacaaag 44277344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 619 - 725
Target Start/End: Original strand, 44278489 - 44278595
Alignment:
Q  619 tcgaatgagcatatcctcttttctctatttctaaaaatcatcttgaaaatgatgattaccaatacaagattaaaa---ttggaggactcttctgaccaaa 715  Q
    |||||||||||||||||||||||||||||| |||||   |||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||    
T  44278489 tcgaatgagcatatcctcttttctctatttttaaaa---atcttgaaaatgattattaccaatacaagattaaaatatttggaggactcttctgaccaaa 44278585  T
Q  716 caaataattg 725  Q
    ||||||||||    
T  44278586 caaataattg 44278595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 623 - 725
Target Start/End: Complemental strand, 17030360 - 17030253
Alignment:
Q  623 atgagcatatcctcttttctctatttctaaaaatc-----atcttgaaaatgatgattaccaatacaagattaaaa---ttggaggactcttctgaccaa 714  Q
    |||||| ||||||||||||||||||||||||||||     |||||||||   ||||||||||||||||||||||||   |||||||||||||||||||||    
T  17030360 atgagcctatcctcttttctctatttctaaaaatcttgaaatcttgaaa---atgattaccaatacaagattaaaatatttggaggactcttctgaccaa 17030264  T
Q  715 acaaataattg 725  Q
    |||||||||||    
T  17030263 acaaataattg 17030253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 15071425 - 15071359
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||||||||||||| ||||||||    
T  15071425 tgagggaccaaaacatacgttttattaattatgtgaccaaaatgaaaacttgaaattatttagggga 15071359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 15072825 - 15072885
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||  |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  15072825 agggaccaaaatgtacgttttattaattgtgggaccaaaatgaaaacttgaaattaattag 15072885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 46111521 - 46111587
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||| |||||||  |||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  46111521 tgaggaaccaaaaggtacgttttattaattgtgggaccaaaataaaaacttgaaattatttaaggga 46111587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 52628906 - 52628972
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  52628906 tgagggaccaaaaggtacgttttattaattgtgggaccaaaattaaaacttgaaattatttaaggga 52628972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 582
Target Start/End: Complemental strand, 12361575 - 12361523
Alignment:
Q  529 atgtctatgatctcttcccaaaccaaacatgaatctttcaattcatttggctct 582  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  12361575 atgtctatgatctcttcccgaaccaaacatgaat-tttcaattcatttggctct 12361523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 14470924 - 14470873
Alignment:
Q  478 tacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  14470924 tacgttttattaattgtgggaccaaaatgaaaacttgaaattatttagggga 14470873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 530
Target Start/End: Original strand, 42245920 - 42245987
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||||| ||  |||||||||||  ||| ||||||||||||||||||||||||||| |||||    
T  42245920 tgagggaccaaaagatgagttttattaattatggaaccaaaataaaaacttgaaattaattaagggat 42245987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 24499688 - 24499754
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| |  ||||||||||| ||| ||||||||| |||||||||||||| ||||||||    
T  24499688 tgagggaccaaaacgtgagttttattaattgtgagaccaaaatgaaaacttgaaattatttagggga 24499754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 44278064 - 44278114
Alignment:
Q  145 agactaggtaaaggtacaatgttatggtgattgtgaaataattgattctgg 195  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  44278064 agactaagtaaaggtacaatgttatggtgattgtgatatagttgattctgg 44278114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 520
Target Start/End: Original strand, 35943484 - 35943537
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||  |||||||||||||| |||||||||||||||||| |||||||||    
T  35943484 ggaccaaaatgtacgttttattaattgtgggaccaaaataaaaatttgaaatta 35943537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 34351989 - 34352055
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||  ||| |||||||||| ||||||||||||| ||||||| |||||| ||| ||||    
T  34351989 tgagggaccaaaaggtacattttattaattgtgggaccaaaatgaaaacttaaaattatttaaggga 34352055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 520
Target Start/End: Original strand, 45585046 - 45585099
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||  |||||||||||||| ||| ||||||||| ||||||||||||||    
T  45585046 ggaccaaaaggtacgttttattaattgtgagaccaaaatgaaaacttgaaatta 45585099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 524
Target Start/End: Complemental strand, 46467229 - 46467168
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||| ||||||  ||||||||| |  |||||||||||| ||||||||||||||||||    
T  46467229 tgagggaccgaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaatta 46467168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 50444731 - 50444788
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||| ||||| |||| |||||||||    
T  50444731 tgagggaccaaaatgtacgttttattaattgtgggactaaaatgaaaatttgaaatta 50444788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 15746801 - 15746865
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||  ||||||||| |  |||||||||||| |||| | ||||||||||||||||    
T  15746801 agggaccaaaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattagggga 15746865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 693 - 725
Target Start/End: Complemental strand, 21825794 - 21825762
Alignment:
Q  693 attggaggactcttctgaccaaacaaataattg 725  Q
    |||||||||||||||||||||||||||||||||    
T  21825794 attggaggactcttctgaccaaacaaataattg 21825762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 27814398 - 27814318
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||       |||||||||||||  ||||||||||||||  | |||| ||||| ||||||||||||||    
T  27814398 tatttggcaaacagaggaaaaaatgagggaccaaaaggtacgttttattaattataggactaaaatgaaaacttgaaatta 27814318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 42244712 - 42244653
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||||  |||||||||||  ||||| |||||| |||| |||||||||||||    
T  42244712 agggaccaaaacatgagttttattaattatgggatcaaaatgaaaatttgaaattaatta 42244653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 6049291 - 6049353
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaa 388  Q
    ||||||||||||| |||||| | || | ||||||||||||| ||||| | |||||||||||||    
T  6049291 agtagacatgcatgatctaatggtcctcttttaataaaaaatatcaatcggtttaaattaaaa 6049353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 9226109 - 9226143
Alignment:
Q  354 ttttaataaaaaagatcaaacagtttaaattaaaa 388  Q
    |||||||||||||||||||||| ||||||||||||    
T  9226109 ttttaataaaaaagatcaaacaatttaaattaaaa 9226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 16963898 - 16963856
Alignment:
Q  482 ttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||    
T  16963898 ttttattaattgtgggaccaaaatgaaaacatgaaattaatta 16963856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 520
Target Start/End: Complemental strand, 52627579 - 52627541
Alignment:
Q  482 ttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  52627579 ttttattaattgtgggaccaaaatgaaaacttgaaatta 52627541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 524
Target Start/End: Original strand, 46318650 - 46318711
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||||||   |||||||| |  |||||| ||||| ||||||||||||||||||    
T  46318650 tgagggaccaaaacatgacttttattagttatgggacaaaaatcaaaacttgaaattaatta 46318711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 46468756 - 46468813
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||| ||||||  ||||||||| |  ||||||||||||||||| |||||||||||||    
T  46468756 ggaccgaaacatgagttttattagttatgggaccaaaataaaaatttgaaattaatta 46468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 529
Target Start/End: Original strand, 51042376 - 51042441
Alignment:
Q  464 gagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| ||||| |  ||||||||||| ||||||||||||| |||| | ||||||||||| ||||    
T  51042376 gagggactaaaacgtgagttttattaattgtgggaccaaaatgaaaattggaaattaattaaggga 51042441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 2e-76; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 529 - 725
Target Start/End: Original strand, 18140991 - 18141184
Alignment:
Q  529 atgtctatgatctcttcccaaaccaaacatgaatctttcaattcatttggctctcacactcaattccttataggaaatttccctatattctcgaatgagc 628  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18140991 atgtctatgatctcttcccgaaccaaacatgaatctttcaattcatttggctctcacactcaattccttataggaaatttccctatattatcgaatgagc 18141090  T
Q  629 atatcctcttttctctatttctaaaaatcatcttgaaaatgatgattaccaatacaagattaaaa---ttggaggactcttctgaccaaacaaataattg 725  Q
     |||||||||||||||||||||||||   |||||||||   ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  18141091 ctatcctcttttctctatttctaaaa---atcttgaaa---atgattaccaatacaagattaaaatatttggaggactcttctgaccaaacaaataattg 18141184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 529 - 725
Target Start/End: Complemental strand, 26760512 - 26760313
Alignment:
Q  529 atgtctatgatctcttcccaaaccaaacatgaatctttcaattcatttggctctcacactcaattcctt-ataggaaatttcccta----tattctcgaa 623  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    |||| |||||    
T  26760512 atgtctatgatctcttccagaaccaaacatgaatctttcaattcatttggctctcacaatcaattccttaataggaaatttccctatctttattatcgaa 26760413  T
Q  624 -tgagcatatcctcttttctctatttctaaaaatcatcttgaaaatgatgattaccaatacaagattaaaa---ttggaggactcttctgaccaaacaaa 719  Q
     ||||| ||||||||||||||||||| |||||   |||||||||   ||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  26760412 ttgagcctatcctcttttctctatttataaaa---atcttgaaa---atgattaccaatacaagattaaaatatttggaggactcttctgaccaaacaaa 26760319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 303 - 529
Target Start/End: Original strand, 42872172 - 42872398
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaagtgaaggaccat 402  Q
    ||||||||||| || ||||  | |||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||  |    
T  42872172 tgttgttgactcactgaagatacagtagatatgcataatctaacgatcctcttttaataaaaaagatcaaacggtttaaataaaaaaagtgaaggactgt 42872271  T
Q  403 cactaacaaaacttttattgttttgacagaaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaa 502  Q
    ||||| || |||||||||||||||||||||||| |  |||||||||||| |||       |||||||||||||| ||| ||||||||||  |||||||||    
T  42872272 cactagcagaacttttattgttttgacagaaaggaattatttggcaaacggaggaaaaagtgagggaccaaaacgtacattttattaattatgggaccaa 42872371  T
Q  503 aataaaaacttgaaattaattagggga 529  Q
    ||| |||| | | ||||||||||||||    
T  42872372 aatgaaaaatggtaattaattagggga 42872398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 332 - 529
Target Start/End: Original strand, 31968293 - 31968491
Alignment:
Q  332 catgcataatctaacgatcatgttttaataaaaaaga-tcaaacagtttaaattaaaaaagtgaaggaccatcactaacaaaacttttattgttttgaca 430  Q
    ||||||||||||||||| | | ||||||||||||| | |||||| ||||||||||||||| ||||||||  ||||||||  ||||||||||||||| |||    
T  31968293 catgcataatctaacgaccctcttttaataaaaaaaaatcaaacggtttaaattaaaaaaatgaaggactgtcactaacggaacttttattgttttaaca 31968392  T
Q  431 gaaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||| || ||||||||||||||||       ||| |||||||||| |||||||||||||| || |||||||||| |||| || |||||||||||||||    
T  31968393 gaaaggatttatttggcaaacagaggaaaaagtgaaggaccaaaacgtacgttttattaattgtaggaccaaaatgaaaaattaaaattaattagggga 31968491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 42871818 - 42871910
Alignment:
Q  7 atcttcctcatcctgcttcatcgctttcttctttcccc-actttacaccatcaattccggcgaaatccacaaccaccaacagttccggcgaaa 98  Q
    ||||| ||||||||||||||| |||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||||    
T  42871818 atctttctcatcctgcttcatggctttcttctttcccccaccttccaccatcaattccggcaaaatccacaaccaccaacagttccggcgaaa 42871910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 390300 - 390234
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  390300 tgagggaccaaaatatacgttttattaattgtgggaccaaaatgaaaacttgaaattatttagggga 390234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 2311006 - 2310944
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  2311006 tgagggaccaaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattaattag 2310944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 15449942 - 15450003
Alignment:
Q  328 tagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  15449942 tagacatgcatgatctaacgatcatcttttaataaaaaagagcaaacagtttaaattaaaaa 15450003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 1188926 - 1188869
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  1188926 tgagggaccaaaatgtacgttttattaattgtgggaccaaaataaaaacttgaaatta 1188869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 27850965 - 27851022
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  27850965 tgagggaccaaaatatacgttttattaattgtgggaccaaaatgaaaacttgaaatta 27851022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 7053427 - 7053363
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaa 390  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||||  ||||||||||||||    
T  7053427 agtagacatgcatgatctaacgatcctcttttaataaaaaagatcaaacgatttaaattaaaaaa 7053363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 530
Target Start/End: Complemental strand, 53432145 - 53432078
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||||||||| ||||||||| |  |||||||||||| |||||||||||||||||| |||||    
T  53432145 tgagggaccaaaacataagttttattacttatgggaccaaaatgaaaacttgaaattaattaagggat 53432078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 42871178 - 42871112
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| |||||||||||||| |||||| |||||| |||| ||||||||||| ||||||    
T  42871178 tgagggaccaaaacgtacgttttattaattgtgggatcaaaatgaaaatttgaaattaatcagggga 42871112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 52963652 - 52963590
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||| ||||    
T  52963652 tgagggaccaaaacatacgatttattaattgtgagaccaaaatgaaaacttgaaattatttag 52963590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 1829836 - 1829779
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  1829836 tgagggactaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaatta 1829779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 6349586 - 6349643
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||    
T  6349586 tgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 6349643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 463 - 523
Target Start/End: Original strand, 1831296 - 1831356
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatt 523  Q
    |||||||||||||  |||||||||||||| ||||||| ||||| |||||||||||||||||    
T  1831296 tgagggaccaaaatgtacgttttattaattgtgggactaaaatgaaaacttgaaattaatt 1831356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 27847759 - 27847704
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||    
T  27847759 agggaccgaaaaatacattttattaattgtgggaccaaaataaaaacttgaaatta 27847704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 530
Target Start/End: Complemental strand, 31965918 - 31965851
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    |||||||||||||  ||| |||| ||||| || |||||| ||||||||||||||||||||||||||||    
T  31965918 tgagggaccaaaatgtacattttcttaattgtaggaccagaataaaaacttgaaattaattaggggat 31965851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 33352479 - 33352525
Alignment:
Q  52 accatcaattccggcgaaatccacaaccaccaacagttccggcgaaa 98  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  33352479 accatcaattccggcgaaacccacaaccaccaccagttccggcgaaa 33352525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 40792834 - 40792772
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||||  || ||||||||||| ||||||||||||| ||||||| |||||||||||    
T  40792834 tgagggaccaaaatgtatgttttattaattgtgggaccaaaatgaaaacttaaaattaattag 40792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 393671 - 393728
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| |||| |||||||||    
T  393671 tgagggaccaaaagatactttttattaattgtgggaccaaaatgaaaatttgaaatta 393728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 6348238 - 6348181
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||| |||||||  |||||||||||||| ||||||||||||| ||||||||||||||    
T  6348238 tgaggaaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 6348181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 24426422 - 24426365
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||| ||||||||| ||||||||||||||    
T  24426422 tgagggaccaaaaggtacgttttattaattgtgagaccaaaatgaaaacttgaaatta 24426365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 327 - 388
Target Start/End: Original strand, 28590771 - 28590832
Alignment:
Q  327 gtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaa 388  Q
    |||||||||||| |||||||| |  | ||||||||||||||||||||||||||| |||||||    
T  28590771 gtagacatgcatgatctaacggtactcttttaataaaaaagatcaaacagtttatattaaaa 28590832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 31967850 - 31967895
Alignment:
Q  53 ccatcaattccggcgaaatccacaaccaccaacagttccggcgaaa 98  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    
T  31967850 ccatcaattccgtcgaaacccacaaccaccaacagttccggcgaaa 31967895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 37882917 - 37882860
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||| ||||| ||||||||||||||    
T  37882917 tgagggaccaaaaggtacgttttattaattgtgggactaaaatgaaaacttgaaatta 37882860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 4129074 - 4129019
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||  ||| |||||||||| ||||||||||||| ||||||||||||||    
T  4129074 agggaccaaaatgtacattttattaattgtgggaccaaaatgaaaacttgaaatta 4129019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 44503689 - 44503768
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||       |||||||||||||  ||||||| |||||| ||| ||||||||||||||||||||||||    
T  44503689 tatttggcaaacagaggaaaaagtgagggaccaaaatgtacgttt-attaattgtgagaccaaaataaaaacttgaaatta 44503768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 52239954 - 52239903
Alignment:
Q  469 accaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||| |||||||||||||| |||||| ||||||||||| |||||||||    
T  52239954 accaaaacgtacgttttattaattgtgggatcaaaataaaaatttgaaatta 52239903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 530
Target Start/End: Original strand, 53435786 - 53435853
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    |||||| |||||||||  ||||||||| |  |||||||||||| |||||||||||||||||| |||||    
T  53435786 tgaggggccaaaacatgagttttattacttatgggaccaaaatgaaaacttgaaattaattaagggat 53435853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 11968594 - 11968537
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  || ||||||||||| ||| ||||||||| ||||||||||||||    
T  11968594 tgagggaccaaaaagtatgttttattaattgtgagaccaaaatgaaaacttgaaatta 11968537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 42810251 - 42810302
Alignment:
Q  478 tacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| ||||||||||||| |||| ||||||||| ||| ||||    
T  42810251 tacgttttattaattgtgggaccaaaatgaaaagttgaaattatttaaggga 42810302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 44501624 - 44501544
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||       ||||||||  |||| ||||||||||||||  |||||||| ||| ||||||||||||||    
T  44501624 tatttggcaaacagagaaaaaagtgagggacttaaacgtacgttttattaattatgggaccagaatgaaaacttgaaatta 44501544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 525
Target Start/End: Original strand, 49344059 - 49344105
Alignment:
Q  479 acgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||    
T  49344059 acgttttattaattgtgggaccaaaataaaagcttaaaattatttag 49344105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 54485578 - 54485644
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| ||||||  | |||||||||||  ||||| |||||| |||||||||||||| ||||||||    
T  54485578 tgagggatcaaaacgaatgttttattaattatgggatcaaaatgaaaacttgaaattatttagggga 54485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 2312515 - 2312572
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||  |||| |||||||||||||| ||||||| |||||  |||||||||||||    
T  2312515 tgagggacttaaacgtacgttttattaattgtgggactaaaatggaaacttgaaatta 2312572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 304 - 529
Target Start/End: Complemental strand, 26696774 - 26696549
Alignment:
Q  304 gttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaagtgaaggaccatc 403  Q
    |||||||||| |||||||  | ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||| |||    
T  26696774 gttgttgactcacggaagatacagtagacatgcataatctaacgatcctcttttaataaaaaagatcaaacggtttaaattaaaaaggtgaaggactatc 26696675  T
Q  404 actaacaaaacttttattgttttgacagaaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaa 503  Q
    | ||||  |||||||||||||||||||||||| || |||||||||||  |||       |||||||||||||  || ||||||||||| |||||||||||    
T  26696674 attaacggaacttttattgttttgacagaaaggatttatttggcaaatggaggaaaaagtgagggaccaaaatgtatgttttattaattgtgggaccaaa 26696575  T
Q  504 ataaaaacttgaaattaattagggga 529  Q
    || |||||||||||||||||||||||    
T  26696574 atgaaaacttgaaattaattagggga 26696549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 424 - 529
Target Start/End: Complemental strand, 8570240 - 8570135
Alignment:
Q  424 tttgacagaaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatt 523  Q
    |||||||||| | || ||||||||||||||||       |||||||||||||| |||||||||||||| || |||||||||| ||||| |||||||||||    
T  8570240 tttgacagaagggatttatttggcaaacagagacaaaagtgagggaccaaaacgtacgttttattaattgtaggaccaaaatgaaaacgtgaaattaatt 8570141  T
Q  524 agggga 529  Q
    ||||||    
T  8570140 agggga 8570135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 45281031 - 45281117
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    ||||||||||| | |||||  | ||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  45281031 tgttgttgactcatggaagatacagtagacatgcatgatctaacgttcatcttttaataaaaaagatcaaacggtttaaattaaaaa 45281117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 22551090 - 22551033
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22551090 tgagggaccaaaagatacgttttattaattgtgggaccaaaataaaaacttgaaatta 22551033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 34504540 - 34504604
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaa 390  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  34504540 agtagacatgcatgatctaacgatcctcttttaataaaaaagatcaaagagtttaaattaaaaaa 34504604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 41629791 - 41629725
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  41629791 tgagggatcaaaatatacgttttattaattgtgagaccaaaataaaaacttgaaattatttagggga 41629725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 4810739 - 4810653
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    ||||||||||| | |||||  | | |||| ||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  4810739 tgttgttgactcaaggaagatacaatagatatgtatgatctaacgatcctcttttaataaaaaagatcaaacagtttaaattaaaaa 4810653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 530
Target Start/End: Original strand, 45437516 - 45437582
Alignment:
Q  464 gagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    |||||||||||||||  |||||||||||  ||||| |||||| ||||||||||||||||||||||||    
T  45437516 gagggaccaaaacatgagttttattaattatgggatcaaaatgaaaacttgaaattaattaggggat 45437582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 465 - 526
Target Start/End: Complemental strand, 42870894 - 42870833
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagg 526  Q
    |||||| ||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  42870894 agggactaaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttagg 42870833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 44076396 - 44076453
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  44076396 tgaggcaccaaaagatacgttttattaattgtgggaccaaaataaaaatttgaaatta 44076453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 4810548 - 4810498
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaa 517  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  4810548 ggaccaaaacatacgttttattaattatgggaccaaaataaaaatttgaaa 4810498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 32797221 - 32797155
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  |||| |||||||||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  32797221 tgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaaggga 32797155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 32798565 - 32798622
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||| ||||  |||||||||||||| ||||||||||||| ||||||||||||||    
T  32798565 tgagggactaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 32798622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 17702308 - 17702374
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||| ||||||||| |  |||||||||||| |||| | ||||||||||| ||||    
T  17702308 tgagggaccaaaacataggttttattagttatgggaccaaaatgaaaattggaaattaattaaggga 17702374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 32693909 - 32693851
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||| | || ||||||||||| ||||||||||||| ||||||| |||||||||||    
T  32693909 ggaccaaagcgtatgttttattaattgtgggaccaaaatgaaaacttaaaattaattag 32693851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 38696391 - 38696325
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||  ||||||||| |  || ||||||||| ||||||| |||||||||||||||    
T  38696391 tgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttaaaattaattagggga 38696325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 41743652 - 41743709
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||| ||||||||| |  |||||||||||| ||||||| ||||||||||    
T  41743652 ggaccaaaacataagttttattacttatgggaccaaaatgaaaacttaaaattaatta 41743709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 524
Target Start/End: Complemental strand, 42877702 - 42877641
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||||||  ||||||||| |  || ||||||||| ||||||||||||||||||    
T  42877702 tgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttgaaattaatta 42877641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 515
Target Start/End: Original strand, 29104398 - 29104450
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttga 515  Q
    ||||||||  ||||||||||||||||||| |||||| ||||||||||| ||||    
T  29104398 tgagggacttaaacatacgttttattaattgtgggatcaaaataaaaatttga 29104450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 416441 - 416500
Alignment:
Q  330 gacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    ||||||||| ||||||| |||||  |||| ||||||||||||||| ||||| ||||||||    
T  416441 gacatgcatgatctaacaatcattctttattaaaaaagatcaaacggtttatattaaaaa 416500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 32695318 - 32695365
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||| |||||||||||||| ||| ||||||||| ||||||||||||||    
T  32695318 aaacgtacgttttattaattgtgagaccaaaatgaaaacttgaaatta 32695365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 529
Target Start/End: Original strand, 42878880 - 42878915
Alignment:
Q  494 tgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||| |||||||||||||||||||||||    
T  42878880 tgggaccaaaatgaaaacttgaaattaattagggga 42878915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 211660 - 211611
Alignment:
Q  481 gttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||| ||||||||||||| ||||| |||||||| ||| |||||    
T  211660 gttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggat 211611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Original strand, 240596 - 240645
Alignment:
Q  481 gttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||| ||||||||||||| ||||| |||||||| ||| |||||    
T  240596 gttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggat 240645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 725283 - 725234
Alignment:
Q  481 gttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||| ||||||||||||| ||||| |||||||| ||| |||||    
T  725283 gttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggat 725234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Original strand, 793951 - 794000
Alignment:
Q  481 gttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||| ||||||||||||| ||||| |||||||| ||| |||||    
T  793951 gttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggat 794000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 30787633 - 30787690
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| |||  ||||||||||  |||||||||||| ||||||| ||||||    
T  30787633 tgagggaccaaaatatatattttattaattatgggaccaaaatgaaaacttaaaatta 30787690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 45279763 - 45279706
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||| |||||||||||||| ||  ||| ||||| |||| |||||||||    
T  45279763 tgagggaccaaaacgtacgttttattaattgtatgactaaaatgaaaatttgaaatta 45279706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 45395044 - 45394983
Alignment:
Q  469 accaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||  |||||||||||  ||||| |||||| ||||||| |||||||||| |||||    
T  45395044 accaaaacatgagttttattaattatgggatcaaaatgaaaacttaaaattaattaagggat 45394983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 303 - 529
Target Start/End: Complemental strand, 45454282 - 45454055
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaagtgaaggaccat 402  Q
    ||||||||||| | |||||  | |||||| |||||||||||||||||| | ||||||| ||||||||||||| | |||||||||||||||||||||   |    
T  45454282 tgttgttgactcatggaagatacagtagatatgcataatctaacgatcctcttttaattaaaaagatcaaacggcttaaattaaaaaagtgaaggattgt 45454183  T
Q  403 cactaacaaaacttttattgttttgacag-aaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggacca 501  Q
    || || || ||||||||||||||||||||   || || |||||||||||| |||       |||||||| ||||| || |||||||||||  || |||||    
T  45454182 cattaccagaacttttattgttttgacagcccaggatttatttggcaaacggaggaaaaagtgagggactaaaacgtatgttttattaattatgagacca 45454083  T
Q  502 aaataaaaacttgaaattaattagggga 529  Q
    |||| ||||| |||||||||||||||||    
T  45454082 aaatgaaaacgtgaaattaattagggga 45454055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 45454813 - 45454724
Alignment:
Q  10 ttcctcatcctgcttcatcgctttcttctttccc-cactttacaccatcaattccggcgaaatccacaaccaccaacagttccggcgaaa 98  Q
    ||||||||| ||||||||| |||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||||    
T  45454813 ttcctcatcttgcttcatcactttcttctttccctcaccttccaccatcaattccggcgaaacccacaaccaccaacagttccggcgaaa 45454724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 30333368 - 30333302
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  30333368 tgagggaccaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaattatttagggga 30333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 30334670 - 30334736
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||  |||||||||||||| ||||||| ||||| |||||||||||||| ||||||||    
T  30334670 tgagggaccaaaaggtacgttttattaattgtgggactaaaatgaaaacttgaaattagttagggga 30334736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 32603016 - 32602959
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  32603016 tgagggactaaaacgtacgttttattaattatgggaccaaaataaaaacttgaaatta 32602959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 47456408 - 47456465
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||    
T  47456408 tgagggaccaaaaagtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 47456465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 440 - 529
Target Start/End: Original strand, 4300058 - 4300147
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||       ||||||||  |||| |||||||||||||| ||||||||||||| |||||||||||||| | ||||||    
T  4300058 tatttggcaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattattcagggga 4300147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 40509777 - 40509833
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  40509777 aaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttagggga 40509833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 526
Target Start/End: Original strand, 47060508 - 47060571
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagg 526  Q
    |||||||||||||| ||||||||||||||  | |||||||||| ||||||| ||||||||||||    
T  47060508 tgagggaccaaaacgtacgttttattaattataggaccaaaatgaaaacttaaaattaattagg 47060571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 40508461 - 40508395
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  |||| |||||||||||||| ||||||| ||||| |||||||||||||| ||||||||    
T  40508461 tgagggacttaaacgtacgttttattaattgtgggacaaaaatgaaaacttgaaattatttagggga 40508395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 43459522 - 43459472
Alignment:
Q  479 acgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  43459522 acgttttattaattgtgggaccaaaatgaaaacttgaaattatttagggga 43459472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 45455405 - 45455471
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| |||||  |||||||||||||| ||||||||||||| |||| ||||||||||||| ||||    
T  45455405 tgagggatcaaaatgtacgttttattaattgtgggaccaaaatgaaaatttgaaattaattaaggga 45455471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 47059191 - 47059125
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| |||||| ||| |||||||||| || |||||||||| ||||||| |||||||||||||||    
T  47059191 tgagggatcaaaacgtacattttattaattgtaggaccaaaatgaaaacttaaaattaattagggga 47059125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 530
Target Start/End: Complemental strand, 38539752 - 38539687
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||||||||||  ||||||||| |  |||||||||||| |||||||||||||||||| |||||    
T  38539752 agggaccaaaacatgagttttattatttatgggaccaaaatgaaaacttgaaattaattaagggat 38539687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 40811569 - 40811508
Alignment:
Q  328 tagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    ||||||| ||| ||||||| || || ||||||||||||||||||||| ||||||||||||||    
T  40811569 tagacattcatgatctaacaattatcttttaataaaaaagatcaaacggtttaaattaaaaa 40811508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 47454420 - 47454363
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||| ||||||||||    
T  47454420 tgagggaccaaaatgtacgttttattaattgtgggaccaaaatgaaagcttgaaatta 47454363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 11344580 - 11344533
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  11344580 aaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 11344533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 22115207 - 22115254
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  22115207 aaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 22115254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 30311502 - 30311568
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  |||| || ||||||||||| ||||||||||||| |||| ||||||||| ||||||||    
T  30311502 tgagggacttaaacgtatgttttattaattgtgggaccaaaatgaaaatttgaaattatttagggga 30311568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 41079870 - 41079927
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatt 523  Q
    |||||||||||| |||||||||||| | |||||||||||||||||| | ||||||||||    
T  41079870 agggaccaaaacgtacgttttattatt-gtgggaccaaaataaaaaatggaaattaatt 41079927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 32255072 - 32255015
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||| |||||  ||||||||||||||  ||||||||||||||||| |||||||||    
T  32255072 tgagggatcaaaatgtacgttttattaattatgggaccaaaataaaaatttgaaatta 32255015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 32256428 - 32256485
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  ||| ||||||||||  |||||||||||| ||||||||||||||    
T  32256428 tgagggaccaaaaggtacattttattaattatgggaccaaaatgaaaacttgaaatta 32256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 529
Target Start/End: Original strand, 33779118 - 33779183
Alignment:
Q  464 gagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| ||||| |  ||||||||||| ||||| ||||||| |||||||||||||| ||||||||    
T  33779118 gagggactaaaacgtgagttttattaattgtggggccaaaatgaaaacttgaaattatttagggga 33779183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 45454638 - 45454593
Alignment:
Q  100 ggggttaccttaatttatctctttttatctgtatatttgatacaaa 145  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||    
T  45454638 ggggtttccataatttatctctttttatctggatatttgatacaaa 45454593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 46201380 - 46201319
Alignment:
Q  327 gtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaa 388  Q
    |||||||||||| |||||||| |  | |||||||||||||| |||||||||||| |||||||    
T  46201380 gtagacatgcatgatctaacggtactcttttaataaaaaaggtcaaacagtttatattaaaa 46201319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 4298819 - 4298730
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||       ||||||||  ||||  || |||||||||| |||||| |||||||||||||| |||||| ||||||||    
T  4298819 tatttggcaaacagaggaaaaagtgagggacttaaacccacattttattaattgtgggatcaaaataaaaacttaaaattatttagggga 4298730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 530
Target Start/End: Complemental strand, 24281138 - 24281090
Alignment:
Q  482 ttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    |||||||||| ||||||||||||||||||| |||||||| |||| ||||    
T  24281138 ttttattaattgtgggaccaaaataaaaacatgaaattatttagaggat 24281090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 30310189 - 30310138
Alignment:
Q  478 tacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||    
T  30310189 tacgttttattaattgtgggacaaaaatgaaaacttgaaattatttaaggga 30310138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 530
Target Start/End: Original strand, 40812646 - 40812713
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    ||||||| |||||| ||||||||||||||  ||| |||||||| ||||| ||||||||| || |||||    
T  40812646 tgagggagcaaaacgtacgttttattaattatggaaccaaaatgaaaacatgaaattaaataagggat 40812713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 518
Target Start/End: Original strand, 43460856 - 43460911
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaat 518  Q
    |||||||| ||||  |||||||||||||| ||||||||||||| ||||||| ||||    
T  43460856 tgagggactaaaatgtacgttttattaattgtgggaccaaaatgaaaacttcaaat 43460911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 6173483 - 6173540
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  ||||||||||||||  ||||  |||||| ||||||||||||||    
T  6173483 tgagggaccaaaatgtacgttttattaattatgggtacaaaatgaaaacttgaaatta 6173540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 25533267 - 25533210
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||   |||||||| |  |||||||||||| ||||||||||||||||||    
T  25533267 ggaccaaaacatgaattttattagttatgggaccaaaatgaaaacttgaaattaatta 25533210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 41078972 - 41078931
Alignment:
Q  328 tagacatgcataatctaacgatcatgttttaataaaaaagat 369  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||    
T  41078972 tagacatgcatgatctaacaatcatcttttaataaaaaagat 41078931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 303 - 529
Target Start/End: Original strand, 36176379 - 36176606
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaagtgaaggaccat 402  Q
    ||||||||||| | |||||  |  |||| |||||||||||||||||||||  |||||||||||||||||||  ||  ||||||| |||   ||||||  |    
T  36176379 tgttgttgactcatggaagatacggtaggcatgcataatctaacgatcatcctttaataaaaaagatcaaatggtcaaaattaataaaaataaggactgt 36176478  T
Q  403 cactaacaaaacttttattgttttgacagaaagaatctatttggcaaacaga-gnnnnnnntgagggaccaaaacatacgttttattaatcgtgggacca 501  Q
    ||||||||  ||||||||| ||| ||||||||  || ||||||||||||||| |       |||||||||||||||||| |||||||||| |||||||||    
T  36176479 cactaacatgacttttattatttcgacagaaatgatttatttggcaaacagaggaaaaaaatgagggaccaaaacatacattttattaattgtgggacca 36176578  T
Q  502 aaataaaaacttgaaattaattagggga 529  Q
    |||| ||||| |||||||||| ||||||    
T  36176579 aaatgaaaacatgaaattaatcagggga 36176606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 34818169 - 34818107
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  34818169 tgagggaccaaatcatacgttttattaattgtgggaccaaaatgaaaacttgaaattaattag 34818107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 18458690 - 18458756
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||| |||||  | ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18458690 tgagggactaaaacgcaagttttattaattgtgggaccaaaataaaaacttgaaattatttagggga 18458756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 527
Target Start/End: Original strand, 53421755 - 53421858
Alignment:
Q  424 tttgacagaaagaatctatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatt 523  Q
    |||||||||| | || ||||||||||||||||       |||||||||||||| |||||||||||||| || |||| ||||| ||||| | |||||||||    
T  53421755 tttgacagaagggatttatttggcaaacagagaaaaaagtgagggaccaaaacgtacgttttattaattgtaggactaaaatgaaaacgtaaaattaatt 53421854  T
Q  524 aggg 527  Q
    ||||    
T  53421855 aggg 53421858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 53194903 - 53194960
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  53194903 tgagggaccaaaacgtacgttttattaattatgggaccaaaatgaaaacttgaaatta 53194960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 28909473 - 28909537
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaa 390  Q
    ||||||||||||| |||||||  || | ||||||||||||||||||| |||||||||||||||||    
T  28909473 agtagacatgcatgatctaaccgtcctcttttaataaaaaagatcaaccagtttaaattaaaaaa 28909537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 12108016 - 12108082
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||| ||| ||||||||| | ||||||||||||| |||||||||||||| ||| ||||    
T  12108016 tgagggaccaaaatatatgttttattagttgtgggaccaaaatgaaaacttgaaattatttaaggga 12108082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 40244270 - 40244204
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||  |||||||||||||| ||| ||||||||| |||||||||||||| ||| ||||    
T  40244270 tgagggaccaaaatgtacgttttattaattgtgagaccaaaatgaaaacttgaaattatttaaggga 40244204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 53420399 - 53420333
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| |||||||||||||| || |||||||||| ||||  |||||||| ||||||||    
T  53420399 tgagggaccaaaacgtacgttttattaattgtaggaccaaaatgaaaatatgaaattagttagggga 53420333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 18197230 - 18197173
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||| |||| |||||||||    
T  18197230 tgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaatttgaaatta 18197173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 37735389 - 37735332
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||| ||||||||||||||||||||  |||||||||||| ||||||| ||||||    
T  37735389 tgagggactaaaacatacgttttattaattatgggaccaaaatgaaaacttaaaatta 37735332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 38242549 - 38242606
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| |||||| |||||| ||||||||||||||    
T  38242549 tgagggaccaaaaggtacgttttattaattgtgggatcaaaatgaaaacttgaaatta 38242606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 38240979 - 38240932
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||||    
T  38240979 aaacgtacgttttattaattgtgggaccaaaataaaaatttgaaatta 38240932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 24403322 - 24403260
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||||||||  ||||||||||  || ||||| ||| |||||||||||||||||||    
T  24403322 tgagggaccaaaacataaattttattaattatgagaccataatgaaaacttgaaattaattag 24403260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 37736114 - 37736180
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||| ||||| |||||||||||||| ||| ||||||||| ||||| |||||||| ||| ||||    
T  37736114 tgagggactaaaacgtacgttttattaattgtgagaccaaaatgaaaacatgaaattatttaaggga 37736180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 525
Target Start/End: Complemental strand, 3208565 - 3208505
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||| |||||| ||||||||||||||  |||||||||||| |||| | ||||||||||||    
T  3208565 agggatcaaaacgtacgttttattaattatgggaccaaaatgaaaaatggaaattaattag 3208505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 18442317 - 18442273
Alignment:
Q  481 gttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||    
T  18442317 gttttattaattgtgggaccaaaatgaaaacttgaaattatttag 18442273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 19487391 - 19487347
Alignment:
Q  481 gttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||    
T  19487391 gttttattaattgtgggaccaaaatgaaaacttgaaattatttag 19487347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 44182510 - 44182450
Alignment:
Q  330 gacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaa 390  Q
    ||||||||| ||||||| ||| |  |||| ||||||||||||||||||||| |||||||||    
T  44182510 gacatgcatgatctaacaatccttctttattaaaaaagatcaaacagtttatattaaaaaa 44182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 529
Target Start/End: Original strand, 3455662 - 3455724
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||  ||||||||| |  || ||||||||| ||||||||||||||||| |||||    
T  3455662 ggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttgaaattaattcgggga 3455724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 20288257 - 20288323
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||| ||||  |||||||||||  ||||| |||||| ||||||  |||||||||||||||    
T  20288257 tgagggaccaacacatgagttttattaattatgggatcaaaatgaaaactaaaaattaattagggga 20288323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 28909638 - 28909700
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||||||||  ||||||||| |  |||||||||||| ||||||  |||||||||||    
T  28909638 tgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactgaaaattaattag 28909700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 53187641 - 53187576
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||| ||||| |||||||||| ||  || |||||| |||||||||||||| ||||||||    
T  53187641 tgagggaccaaa-catacattttattaattgtaagatcaaaatgaaaacttgaaattatttagggga 53187576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 53624394 - 53624451
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||| ||||||||  |||||||||||||| ||| || |||||| ||||||||||||||    
T  53624394 tgagtgaccaaaatgtacgttttattaattgtgagatcaaaatgaaaacttgaaatta 53624451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 22047815 - 22047749
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  22047815 tgagggaccaaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattaattaaggga 22047749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 22049169 - 22049235
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||| ||||||||    
T  22049169 tgagggaccaaaacgtacgttttattaattatgggaccaaaatgaaaacttgaaattatttagggga 22049235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 30857879 - 30857821
Alignment:
Q  467 ggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||    
T  30857879 ggaccaaaacatacgttttattaattgtgggaccaaaatgaaaacttaaaattaattag 30857821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 39605502 - 39605564
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||    
T  39605502 tgagggaccaaaacgtatgttttattaattgtgggaccaaaatgaaaacttgaaattaattag 39605564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 1010397 - 1010463
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||  ||||||||| |  ||||||||||||||||||||||||||||||| ||||    
T  1010397 tgagggaccaaaacatgagttttattagttatgggaccaaaataaaaacttgaaattaattaaggga 1010463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 325218 - 325275
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||    
T  325218 tgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 325275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 39603936 - 39603879
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||||    
T  39603936 tgagggaccaaaacgtacgttttattaattgtgggatcaaaatgaaaacttgaaatta 39603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 27705182 - 27705244
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  27705182 agtagacatgcaga-tctaacgatcatcttttaataaaaaatatcaaacggtttaaattaaaaa 27705244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 30859182 - 30859262
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||       ||||||||  |||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  30859182 tatttggcaaacagaggaaaatgtgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 30859262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 8521338 - 8521272
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||  ||||||||| |  |||||||||||| |||||||||||||||||| ||||    
T  8521338 tgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaaggga 8521272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 27705349 - 27705406
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||| |||||||||||||| ||  ||||||||| ||||||||||||||    
T  27705349 tgagggaccaaaacgtacgttttattaattgtatgaccaaaatgaaaacttgaaatta 27705406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 8523787 - 8523845
Alignment:
Q  471 caaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  ||||||||| |  |||||||||||| |||||||||||||||||||||||    
T  8523787 caaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattagggga 8523845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 529
Target Start/End: Complemental strand, 20538117 - 20538070
Alignment:
Q  482 ttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||    
T  20538117 ttttattaattatgggaccaaaatgaaaatttgaaattaattagggga 20538070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 527
Target Start/End: Complemental strand, 1009261 - 1009203
Alignment:
Q  469 accaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggg 527  Q
    ||||||||||  ||||||||| |  ||| |||||||| |||||||||||||||||||||    
T  1009261 accaaaacatgagttttattagttatggaaccaaaatgaaaacttgaaattaattaggg 1009203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 26047896 - 26047834
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||| |||||||  ||||||||| |  || |||||||||||||| ||||||||||||||    
T  26047896 tgagggactaaaacatgagttttattagttatgagaccaaaataaaaatttgaaattaattag 26047834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 9169665 - 9169608
Alignment:
Q  468 gaccaaaacatac-gttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||  |||||||||||  |||||| ||||| ||||||||||||||||||    
T  9169665 gaccaaaacatagagttttattaattatgggactaaaatgaaaacttgaaattaatta 9169608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 32757908 - 32757851
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||  ||||||||| |  |||||||||||| |||||| |||||||    
T  32757908 tgagggaccaaaacatgagttttattatttatgggaccaaaatgaaaactggaaatta 32757851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 520
Target Start/End: Original strand, 41798004 - 41798037
Alignment:
Q  487 ttaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||| ||||||||||||||||||||||||||||    
T  41798004 ttaattgtgggaccaaaataaaaacttgaaatta 41798037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 6030312 - 6030398
Alignment:
Q  303 tgttgttgacttacggaaggcagagtagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaa 389  Q
    ||||||||||| | |||||  | ||||||||||||| || ||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  6030312 tgttgttgactcatggaagatacagtagacatgcatgatataacgttcatcttttaataaaaaagatcaaacggtttaaattaaaaa 6030398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 17460717 - 17460779
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||    
T  17460717 tgagggaccaaaacgtacgttttattaattgtgggatcaaaatgaaaacttgaaattaattag 17460779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 7437794 - 7437851
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  7437794 tgagggaccaaaatatacgttttattaattgtgggaccaaaatgaaaacttgaaatta 7437851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 32470618 - 32470674
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  32470618 aaacgtacgttttattaattgtgggaccaaaataaaaacttgaaattatttagggga 32470674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 530
Target Start/End: Complemental strand, 43033165 - 43033098
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattaggggat 530  Q
    |||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||| ||| |||||    
T  43033165 tgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaagggat 43033098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 11316016 - 11315950
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  |||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  11316016 tgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttagggga 11315950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 28561451 - 28561385
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||| ||||||| |||||| ||| ||||    
T  28561451 tgagggaccaaaagatacgttttattaattgtgagaccaaaatgaaaacttaaaattatttaaggga 28561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 11317401 - 11317458
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||| |||| |||||||||    
T  11317401 tgagggaccaaaatatatgttttattaattgtgggaccaaaatgaaaatttgaaatta 11317458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 30748727 - 30748667
Alignment:
Q  328 tagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaa 388  Q
    ||||||||||| |  |||||||| | |||||||||||||||||||||| ||||||||||||    
T  30748727 tagacatgcatgaattaacgatcctcttttaataaaaaagatcaaacaatttaaattaaaa 30748667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 17459336 - 17459270
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  |||| |||||||||||||| ||| ||||||||| |||||||||||||| ||| ||||    
T  17459336 tgagggacttaaacgtacgttttattaattgtgtgaccaaaatgaaaacttgaaattatttaaggga 17459270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 34512897 - 34512831
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||| ||||||||  |||||||||||  |||||||||||| |||||| | ||||||||||||||    
T  34512897 tgagggatcaaaacatgagttttattaattatgggaccaaaatgaaaactggtaattaattagggga 34512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 36010660 - 36010594
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||| |||| ||||||||||||||||||  ||||||||| ||||| |||||||| ||| ||||    
T  36010660 tgagggactaaaatatacgttttattaatcgtaagaccaaaatgaaaacatgaaattatttaaggga 36010594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 2277502 - 2277559
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||| ||||||||| |  |||||||||||| |||||| |||||||    
T  2277502 tgagggaccaaaacataagttttattacttatgggaccaaaatgaaaactggaaatta 2277559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 526
Target Start/End: Original strand, 30749328 - 30749389
Alignment:
Q  465 agggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagg 526  Q
    ||||||||||||||  |||||||||||  |||||| ||||| |||||| |||||||||||||    
T  30749328 agggaccaaaacatgagttttattaattatgggactaaaatgaaaactggaaattaattagg 30749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 524
Target Start/End: Complemental strand, 35903591 - 35903530
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaatta 524  Q
    ||||||||||||||||   |||||||| |  |||||||||||| ||||||||||||||||||    
T  35903591 tgagggaccaaaacatgacttttattagttatgggaccaaaatgaaaacttgaaattaatta 35903530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 2384358 - 2384418
Alignment:
Q  330 gacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaa 390  Q
    ||||||||| ||||||| ||| |  |||| ||||||||||||||||||||| |||||||||    
T  2384358 gacatgcatgatctaacaatccttctttattaaaaaagatcaaacagtttatattaaaaaa 2384418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 30749190 - 30749253
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaat-aaaaaagatcaaacagtttaaattaaaa 388  Q
    ||||||||||||| |||||||| || | ||||||| ||||||||||| || |||||||||||||    
T  30749190 agtagacatgcatgatctaacggtcctcttttaatcaaaaaagatcatacggtttaaattaaaa 30749253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 520
Target Start/End: Complemental strand, 7436531 - 7436493
Alignment:
Q  482 ttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||| || |||||||||||||||||||||||||    
T  7436531 ttttattaattgtaggaccaaaataaaaacttgaaatta 7436493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 34513421 - 34513483
Alignment:
Q  328 tagacatgcataatctaacgatcatgttttaataaaaaagatcaaacagtttaaattaaaaaa 390  Q
    |||||| |||||||| || |||||| |||| | |||| ||||||||| |||||||||||||||    
T  34513421 tagacacgcataatccaatgatcatctttttaaaaaacagatcaaacggtttaaattaaaaaa 34513483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 42641754 - 42641788
Alignment:
Q  354 ttttaataaaaaagatcaaacagtttaaattaaaa 388  Q
    |||||| ||||||||||||||||||||||||||||    
T  42641754 ttttaaaaaaaaagatcaaacagtttaaattaaaa 42641788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 42641896 - 42641950
Alignment:
Q  466 gggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||  | ||||||||||||  ||||||||||||||||| |||||||||    
T  42641896 gggaccaaaaggtgcgttttattaattatgggaccaaaataaaaatttgaaatta 42641950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 28562842 - 28562899
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  || |||||||||||  |||||||||||| |||| |||||||||    
T  28562842 tgagggaccaaaaggtatgttttattaattatgggaccaaaatgaaaatttgaaatta 28562899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 32469215 - 32469174
Alignment:
Q  479 acgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  32469215 acgttttattaattgtgggatcaaaatgaaaacttgaaatta 32469174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 43034504 - 43034561
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||| ||  ||||| ||||||||||||||    
T  43034504 tgagggaccaaaaggtacgttttattaattgtgagattaaaatgaaaacttgaaatta 43034561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 124075 - 123995
Alignment:
Q  440 tatttggcaaacagagnnnnnnntgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||       |||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||    
T  124075 tatttggcaaacagaggaaaaagtgagggaccaaaatgtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 123995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 125266 - 125323
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| ||||||||||||| |||| |||||||||    
T  125266 tgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaatttgaaatta 125323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 585
Target Start/End: Complemental strand, 233971 - 233920
Alignment:
Q  534 tatgatctcttcccaaaccaaacatgaatctttcaattcatttggctctcac 585  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  233971 tatgatctcttcccgaaccaaacatgaatctttcgattcatttggctctcac 233920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 52675 - 52613
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    |||||||||||||| ||| |||||||||| |||||| |||||| |||||||||||||||||||    
T  52675 tgagggaccaaaacgtacattttattaattgtgggatcaaaatgaaaacttgaaattaattag 52613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 54218 - 54275
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||  ||||||||||||| ||| ||||||||| ||||||||||||||    
T  54218 tgagggaccaaaacgcacgttttattaattgtgcgaccaaaattaaaacttgaaatta 54275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 127516 - 127450
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||||||||||  ||||||||| |  |||||||||||  |||||||||||||||||||||||    
T  127516 tgagggaccaaaacatgagttttattagttatgggaccaaaacgaaaacttgaaattaattagggga 127450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 6452544 - 6452610
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    ||||||||  |||| ||||||||||||||  |||||||||||| |||||||||||||| ||||||||    
T  6452544 tgagggactcaaacgtacgttttattaattatgggaccaaaatgaaaacttgaaattatttagggga 6452610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 34023969 - 34023912
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||  |||||||||||||| |||| |||||||| ||||||| ||||||    
T  34023969 tgagggaccaaaaggtacgttttattaattgtggtaccaaaatgaaaacttaaaatta 34023912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 7310349 - 7310302
Alignment:
Q  473 aaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||||    
T  7310349 aaacatacgttttattaattatgggaccaaaatgaaaacttaaaatta 7310302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 529
Target Start/End: Complemental strand, 6452367 - 6452301
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||| ||||| ||| ||||||||||  | |||||||||  |||||||||||||| ||||||||    
T  6452367 tgagggactaaaacgtaccttttattaattataggaccaaaacgaaaacttgaaattatttagggga 6452301  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 27082177 - 27082234
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||  |||||||| |||||||||| ||||||||||||| |||| | |||||||    
T  27082177 tgagggacttaaacatactttttattaattgtgggaccaaaatgaaaattcgaaatta 27082234  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 34024097 - 34024154
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||| |||||  ||| |||||||||| ||||||||||||| |||| |||||||||    
T  34024097 tgagggatcaaaatgtacattttattaattgtgggaccaaaatgaaaatttgaaatta 34024154  T

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Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 43608 - 43665
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||||| ||||||    
T  43608 tgagggacttaaacatacgttttattaattatgggaccaaaataaaaacttaaaatta 43665  T

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Target: scaffold2071 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 714 - 776
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattag 525  Q
    ||||||||||||||||  ||||||||| |  |||||||||||| |||||| ||||||||||||    
T  714 tgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattag 776  T

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Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 109778 - 109844
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaattaattagggga 529  Q
    |||||||| ||||  |||||||||||||| || |||||||||| |||||||||||||| ||| ||||    
T  109778 tgagggactaaaatgtacgttttattaattgtaggaccaaaatgaaaacttgaaattatttaaggga 109844  T

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Target: scaffold0265 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 693 - 725
Target Start/End: Original strand, 2127 - 2159
Alignment:
Q  693 attggaggactcttctgaccaaacaaataattg 725  Q
    |||||||||||||||||||||||||||||||||    
T  2127 attggaggactcttctgaccaaacaaataattg 2159  T

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Target: scaffold0265; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 693 - 725
Target Start/End: Original strand, 7016 - 7048
Alignment:
Q  693 attggaggactcttctgaccaaacaaataattg 725  Q
    |||||||||||||||||||||||||||||||||    
T  7016 attggaggactcttctgaccaaacaaataattg 7048  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 32824 - 32758
Alignment:
Q  326 agtagacatgcataatctaacgatcatgttttaataaaaaa--gatcaaacagtttaaattaaaaaa 390  Q
    ||||||||||||| |||||| | || | |||||||||||||  |||||||| |||||||||||||||    
T  32824 agtagacatgcatgatctaatggtcctcttttaataaaaaaaagatcaaacggtttaaattaaaaaa 32758  T

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Target: scaffold1251 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 1118 - 1175
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    ||||||||||||||||  ||||||||| |  |||||||||||| |||||| |||||||    
T  1118 tgagggaccaaaacatgagttttattacttatgggaccaaaatgaaaactggaaatta 1175  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 18895 - 18838
Alignment:
Q  463 tgagggaccaaaacatacgttttattaatcgtgggaccaaaataaaaacttgaaatta 520  Q
    |||||||| |||||||| ||||||||||   |||||||||||| ||||||| ||||||    
T  18895 tgagggactaaaacataagttttattaaatatgggaccaaaatgaaaacttaaaatta 18838  T

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