View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626-Insertion-6 (Length: 682)
Name: NF5626-Insertion-6
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 82 - 682
Target Start/End: Complemental strand, 30409601 - 30409001
Alignment:
| Q |
82 |
cctataagctatatttttatcatacactgtccaagatatgaaagctttctaactaagtggtattttggttaccttgaactcaccaggtttctaataatcg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30409601 |
cctataagctatatttttatcatacactgtccaagatatgaaagctttctaactaagtggtattttggttaccttgaattcaccaggtttctaataatcg |
30409502 |
T |
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| Q |
182 |
ccacatgatgaatggaggaggacatagagacagccaaatgcttgctcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatat |
281 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409501 |
ccacatgatgaatggaggaggacatagagacggccaaatgcttgttcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatat |
30409402 |
T |
|
| Q |
282 |
ttagctagaaatagtggagtccatttctacaatgatgtgaaaatggtagatgacgtgattgtcaataccaataatgttgacatacccatatctcgttccg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409401 |
ttagctagaaatagtggagtccatttctacaatgatgtgaaaatggtagatgacgtgattgtcaataccaataatgttgacatacccatatctcgttccg |
30409302 |
T |
|
| Q |
382 |
aagaagctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctca |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409301 |
aagaagctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctca |
30409202 |
T |
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| Q |
482 |
tgcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgt |
581 |
Q |
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| T |
30409201 |
tgcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgt |
30409102 |
T |
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| Q |
582 |
actcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccac |
681 |
Q |
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| T |
30409101 |
actcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccac |
30409002 |
T |
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| Q |
682 |
a |
682 |
Q |
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| T |
30409001 |
a |
30409001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 386 - 680
Target Start/End: Complemental strand, 30395636 - 30395342
Alignment:
| Q |
386 |
agctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgca |
485 |
Q |
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||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
30395636 |
agctagcgatgaaagcattctgcttgaaaattcaatccacagcaaggatatcggacaacatcatgtcctagaagcagaacagaaagagatatctcatgca |
30395537 |
T |
|
| Q |
486 |
gcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactc |
585 |
Q |
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| T |
30395536 |
gcaggagcaaagaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatc |
30395437 |
T |
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| Q |
586 |
attctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaacca |
680 |
Q |
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| T |
30395436 |
agtctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcataaccatgcaaaacca |
30395342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 30395870 - 30395631
Alignment:
| Q |
26 |
gaaacatttaaacatgaagatgataataccaaatttaaacaaatatcccattcagtcctataagctatatttttatcatacactgtccaagatatgaaag |
125 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30395870 |
gaaacacttaaacatgaagat---aataccaaatttaaacaaacatcccattcagtcctataagctatatttttctcatacactgtccaagatatgaaag |
30395774 |
T |
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| Q |
126 |
ctttctaactaagtggtattttggttaccttgaactcaccaggtttctaataatcgccacatgatgaatggaggaggacatagagacagccaaatgcttg |
225 |
Q |
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| T |
30395773 |
ctttctaactaagtgatattttggttaccttgaattcaccaggtttctaat---------------------ggaggagatagagacagccaaatgcttg |
30395695 |
T |
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| Q |
226 |
ctcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctag |
289 |
Q |
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||||| ||| |||||||||||||||||||||||| ||| |||| ||| ||| ||||||||||| |
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| T |
30395694 |
ttcaagatcagcaactgttagatttttcattcccagaagattttccaaatgactatttagctag |
30395631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 26332619 - 26332563
Alignment:
| Q |
507 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccg |
563 |
Q |
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|||||||| ||||||||||||||||| || |||||||| ||||| || ||| ||||| |
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| T |
26332619 |
gatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccg |
26332563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 504 - 597
Target Start/End: Original strand, 2056297 - 2056390
Alignment:
| Q |
504 |
gaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
597 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| || ||||| || || || |||| |||||||| ||||||||||| ||||||| |
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| T |
2056297 |
gaggatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtc |
2056390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 597
Target Start/End: Complemental strand, 26967134 - 26967038
Alignment:
| Q |
501 |
tcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
597 |
Q |
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||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| || || ||||| ||| | ||||||||| |
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| T |
26967134 |
tcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtc |
26967038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 580
Target Start/End: Complemental strand, 31615428 - 31615355
Alignment:
| Q |
507 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatg |
580 |
Q |
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||||| || |||||| |||||||||| ||||| ||||| || || |||||| |||||||||| ||||||||||| |
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| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatg |
31615355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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