View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626-Insertion-7 (Length: 673)
Name: NF5626-Insertion-7
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 673
Target Start/End: Original strand, 6001546 - 6002208
Alignment:
| Q |
10 |
aagatccttaacagagggcctcaaacttagagaggtatcaatttaaaaacaaacttacatgtaagataaaaatccgttgtaaatgtcannnnnnngtagg |
109 |
Q |
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||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |
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| T |
6001546 |
aagatccttaacatatggcctcaaacttagagaggtctcaatttaaaaacaaacttgcatgtaagataaaaatccgttgtaaatgtcatttttctgaagg |
6001645 |
T |
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| Q |
110 |
tagaagtttggaagataacaattttgttgttaattatgcgttgtctatagataaatacatagttgtctttaatcaga------------------ctcat |
191 |
Q |
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| T |
6001646 |
tagaagtttggaaaataacaattttgttgttaattatgcgttgtctatagataaatatatagttgtctttagttaaagctatgtttaaatcattgctcat |
6001745 |
T |
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| Q |
192 |
atatttaactgcaacttagttgtctatcactattagtggtgttagatttcttcaattattttaaaatgaaaagttgtcaaaactataacggggtcttcaa |
291 |
Q |
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| T |
6001746 |
atatttaactacaacttagttgtctatcactattactggtgttagatttcttcaattattttaaaatgaaaagttgtcaaaactataa------------ |
6001833 |
T |
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| Q |
292 |
attgtcggatacaaccctaagaccagagcccactcaatacctatcaagtaaatcagatatagagaatgtgtgattggctataagtggtcaacatagttgt |
391 |
Q |
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| T |
6001834 |
------ggaaacaaccctgagaccagagcccactcaatacctatcaagtaaaacagatatagagaatgtgtgattggctataagtggtcaacatagttgt |
6001927 |
T |
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| Q |
392 |
tttcttctttgaaatcgtggatagcttattgcatgttcttgattgaacggagacaattaagttgcatgttccttaagctccaaggcaacaattaaatgag |
491 |
Q |
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| T |
6001928 |
tttcttctttgaaatcgtggatagcttattgcatgttcttgattgaacggagacaattaagttgcatgttccttaagctccaaggcaacaattaaatgag |
6002027 |
T |
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| Q |
492 |
tattagcaaaagnnnnnnnaacaatgatagagtttgattccaaccaaaaatgagtctgactccaaaatatcgtatgttgatttcgtacgcaatccattcc |
591 |
Q |
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| T |
6002028 |
tattagcaaaagtttttttaacaatgatagagtctgattccaactaaaaatgagtctgactccaagatatcgtatgttgatttcgtacgcaatccatccc |
6002127 |
T |
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| Q |
592 |
tatttcgtctgaaaatttaaaatatttcagacgaaattattttcatctgaaattatgagttttcttctttgaccttaaaatg |
673 |
Q |
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| T |
6002128 |
taatccgtctgaaaatttaaaatatttcaaacgaaatta-tttcatctgaaattgtgagttttcttctttgaccttaaaatg |
6002208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 22572219 - 22572327
Alignment:
| Q |
192 |
atatttaactgcaacttagttgtctatcactattagtggtgttaga--tttcttcaattatttt-aaaatgaaaagttgtcaaaactataacggggtctt |
288 |
Q |
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| T |
22572219 |
atatttaactacaacttagttttctataactataagtggagttagaatttttttcaattatttttaaaatgaaaaattgtcaaaattataacgggg-ctt |
22572317 |
T |
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| Q |
289 |
caaattgtcg |
298 |
Q |
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| T |
22572318 |
cgaattgtcg |
22572327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 26515695 - 26515752
Alignment:
| Q |
105 |
gtaggtagaagtttggaagataacaattttgttgttaattatgcgttgtctatagata |
162 |
Q |
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| T |
26515695 |
gtaggtagaagtttgaaagacaacaattttgttgtcaattatgcattgtccatagata |
26515752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 18442030 - 18442089
Alignment:
| Q |
106 |
taggtagaagtttggaagataacaattttgttgttaattatgcgttgtctatagataaat |
165 |
Q |
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| T |
18442030 |
taggtacaagtttgaaagacaacaattttgttgtaaattatgcattgtttatagataaat |
18442089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 6056634 - 6056676
Alignment:
| Q |
105 |
gtaggtagaagtttggaagataacaattttgttgttaattatg |
147 |
Q |
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| T |
6056634 |
gtaggtaaaagtttggaagacaacaattttattgttaattatg |
6056676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 11049788 - 11049841
Alignment:
| Q |
187 |
ctcatatatttaactgcaacttagttgtctatcactattagtggtgttagattt |
240 |
Q |
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| T |
11049788 |
ctcatatatttaactataacttaattatttatcactataagtggtgttagattt |
11049841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 27831626 - 27831666
Alignment:
| Q |
195 |
tttaactgcaacttagttgtctatcactattagtggtgtta |
235 |
Q |
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| T |
27831626 |
tttaactacaacttagttgtcaatcactataagtggtgtta |
27831666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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