View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626-Insertion-8 (Length: 451)
Name: NF5626-Insertion-8
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Original strand, 6125975 - 6126419
Alignment:
| Q |
7 |
agtatcaactttgaagactwtgtcaaaacataggaacggagatgagaaatatacttcattcaagaatggaaaaatgttggaatcaaatgaactttcactc |
106 |
Q |
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| T |
6125975 |
agtatcaactttgaagactatgtcaaaacataggaacggagatgagaaatatatttcattcaagaatggaaaaatgttggaatcaaatgaactttcactc |
6126074 |
T |
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| Q |
107 |
aaccgcatcacggaagacacaatactagtaataaagagtgttgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatg |
206 |
Q |
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| T |
6126075 |
aaccgcatcacggaagacacaatactagtaataaagagtgttgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatg |
6126174 |
T |
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| Q |
207 |
atagtgttgtggtatgtttaccaggaagtagaattccaagccagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatatta |
306 |
Q |
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| T |
6126175 |
atagtgttgtggtatgtttaccaggaagtagaattccaagccagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatatta |
6126274 |
T |
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| Q |
307 |
ctcgttgggattcatttttgcagtggttgtttctccatccagtggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaa |
406 |
Q |
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| T |
6126275 |
ctcgttgggattcattttcgcagtggttgtttctccatccagtggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaa |
6126374 |
T |
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| Q |
407 |
gatggcagtcaggtgggagtttcttccgagtggcatagtgaagtt |
451 |
Q |
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| T |
6126375 |
gatggcagtcaggtgggagtttcttccgagtggcataatgaagtt |
6126419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 6172380 - 6171939
Alignment:
| Q |
7 |
agtatcaactttgaagactwtgtcaaaacataggaacggagatgagaaatatacttcattcaagaatggaaaaatgttggaatcaaatgaactttcactc |
106 |
Q |
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| T |
6172380 |
agtatcaactttgaagactacgtcaaaacataagaatggagatgagaaatatatttcattcaataatggaaaaatgttggaatcaaatgacctgtcactc |
6172281 |
T |
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| Q |
107 |
aaccgcatcacggaagacacaatactagtaataaagagtgttgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatg |
206 |
Q |
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| T |
6172280 |
aattgcatcacggaagacacaattctagttatgaagagtgttgcattgtataatgtactagtacataaacgttgttcagaaactcatagctacaattatg |
6172181 |
T |
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| Q |
207 |
atagtgttgtggtatgtttaccaggaagtagaattccaagccagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatatta |
306 |
Q |
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| T |
6172180 |
atagtgttgtggtgtatttaccaggaagcagaattccaagcaagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatatta |
6172081 |
T |
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| Q |
307 |
ctcgttgggattcatttttgcagtggttgtttctccatccagtggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaa |
406 |
Q |
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| T |
6172080 |
ctcgttgggattcatttttgcagtggttgtttctccatccaatggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaa |
6171981 |
T |
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| Q |
407 |
gatggcagtcaggtgggagtttcttccgagtggcatagtgaa |
448 |
Q |
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| T |
6171980 |
gatggcagtcaggtgggagtttcttccgagtggcatagtgaa |
6171939 |
T |
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