View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626-Insertion-9 (Length: 442)
Name: NF5626-Insertion-9
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 51578433 - 51578867
Alignment:
| Q |
8 |
tcagtaatgtccaattttaatttaatgagannnnnnnaccacatccaacctcaattttactctaatgagaatattttgttccatcgtaccgctcattaag |
107 |
Q |
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| T |
51578433 |
tcagtaatgtccaattttaatttaatgagatttttttaccacatccaacctcaattttactctaatgagaatattttgttccatcgtaccgctcattaag |
51578532 |
T |
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| Q |
108 |
caatctccgaaccatatataagcaaagcaagaaatcgaacttaaaagcaataggtcaattaatgggtgttcctagatctgaaattagaactgggtacaaa |
207 |
Q |
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| T |
51578533 |
caatctccgaaccatatataagcaaagcaagaaatcgaacttaaaagcaataggtcaattaatgggtgttcctagatctgaaattagaaccgggtacaaa |
51578632 |
T |
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| Q |
208 |
gcatgtgtatttttaaaaactagaagagaaaaaatgttcgacaaacataacaaatgaaaataatcataagtaaaatgattaaaatgagattttcgaaaaa |
307 |
Q |
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| T |
51578633 |
gcatgtgtatttttaaaaactagaagagaaaaaatgttcgacaaacataacaaatgaaaataatcataagtaaaatgattaaaatgagattttccaaaaa |
51578732 |
T |
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| Q |
308 |
cttctttttactagtagttcacggggatccctaatatgcacccctaaaacaagggtccaccggtggacttatacaaatgacataccacaatcggttgccc |
407 |
Q |
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| T |
51578733 |
cttctttttactagtagttcacggggatccctaatatgcacccctaaaacaagggtccaccggtggacttatacaaatgacataccacaatcggttgccc |
51578832 |
T |
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| Q |
408 |
ttaatttattgtgtaaatattaaataccaattttg |
442 |
Q |
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| T |
51578833 |
ttaatttattgtgtaaatattaaataccaattttg |
51578867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 49356579 - 49356615
Alignment:
| Q |
336 |
ccctaatatgcacccctaaaacaagggtccaccggtg |
372 |
Q |
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| T |
49356579 |
ccctaatatggacccctaaaacaagggtccaccggtg |
49356615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 14350197 - 14350161
Alignment:
| Q |
336 |
ccctaatatgcacccctaaaacaagggtccaccggtg |
372 |
Q |
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| T |
14350197 |
ccctaatatggacccttaaaacaagggtccaccggtg |
14350161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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