View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5626_high_1 (Length: 840)

Name: NF5626_high_1
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5626_high_1
NF5626_high_1
[»] chr7 (44 HSPs)
chr7 (454-554)||(29065820-29065922)
chr7 (454-554)||(5644678-5644780)
chr7 (545-609)||(30080414-30080478)
chr7 (551-602)||(37460583-37460634)
chr7 (459-554)||(21635941-21636038)
chr7 (545-602)||(19865670-19865727)
chr7 (545-609)||(35456184-35456248)
chr7 (545-599)||(30629438-30629492)
chr7 (454-523)||(2057396-2057465)
chr7 (545-602)||(2411691-2411748)
chr7 (545-602)||(9784567-9784624)
chr7 (545-602)||(40496098-40496155)
chr7 (545-609)||(14602877-14602941)
chr7 (545-609)||(22391208-22391272)
chr7 (546-602)||(28538790-28538846)
chr7 (485-554)||(46069423-46069494)
chr7 (551-609)||(14790467-14790524)
chr7 (454-548)||(40110738-40110835)
chr7 (454-519)||(6498758-6498823)
chr7 (454-523)||(18789235-18789304)
chr7 (545-602)||(40667717-40667774)
chr7 (546-602)||(42816903-42816959)
chr7 (455-523)||(43955603-43955671)
chr7 (454-517)||(43955518-43955581)
chr7 (551-609)||(36328434-36328492)
chr7 (545-599)||(39342277-39342330)
chr7 (454-523)||(9784920-9784989)
chr7 (454-523)||(23548600-23548669)
chr7 (454-523)||(26162126-26162195)
chr7 (454-523)||(31632723-31632792)
chr7 (454-522)||(34398938-34399007)
chr7 (454-523)||(40110827-40110896)
chr7 (454-523)||(44915196-44915265)
chr7 (454-518)||(30524256-30524320)
chr7 (551-599)||(41442720-41442768)
chr7 (545-593)||(43791403-43791451)
chr7 (557-597)||(45967296-45967336)
chr7 (554-597)||(25188910-25188953)
chr7 (556-602)||(26416312-26416357)
chr7 (545-599)||(46700543-46700597)
chr7 (454-523)||(28539157-28539226)
chr7 (454-523)||(29065908-29065977)
chr7 (454-523)||(34388354-34388423)
chr7 (454-523)||(35776944-35777013)
[»] chr8 (47 HSPs)
chr8 (454-554)||(3853617-3853719)
chr8 (454-554)||(3858075-3858177)
chr8 (552-609)||(9983034-9983091)
chr8 (546-602)||(40733748-40733804)
chr8 (546-602)||(44346334-44346390)
chr8 (545-599)||(33376947-33377001)
chr8 (454-520)||(40046805-40046871)
chr8 (472-554)||(13404883-13404967)
chr8 (454-548)||(17110931-17111027)
chr8 (545-602)||(43185359-43185416)
chr8 (454-519)||(44889355-44889420)
chr8 (554-602)||(7079686-7079734)
chr8 (454-518)||(33902668-33902732)
chr8 (551-602)||(29611711-29611762)
chr8 (454-520)||(28324678-28324744)
chr8 (559-609)||(34009082-34009132)
chr8 (564-609)||(6416524-6416569)
chr8 (555-602)||(29257026-29257073)
chr8 (459-517)||(8689138-8689196)
chr8 (545-599)||(10593452-10593505)
chr8 (454-520)||(17110870-17110936)
chr8 (551-609)||(26520088-26520146)
chr8 (552-602)||(31980163-31980212)
chr8 (454-520)||(42711372-42711438)
chr8 (454-519)||(515549-515614)
chr8 (455-549)||(4156228-4156324)
chr8 (546-599)||(8049556-8049609)
chr8 (553-598)||(13144972-13145017)
chr8 (454-523)||(24044961-24045030)
chr8 (545-598)||(31976235-31976288)
chr8 (454-523)||(33377310-33377379)
chr8 (554-599)||(35404403-35404448)
chr8 (555-608)||(35978699-35978752)
chr8 (454-519)||(36103102-36103167)
chr8 (545-589)||(24045342-24045386)
chr8 (545-589)||(24051650-24051694)
chr8 (554-602)||(36624923-36624971)
chr8 (559-602)||(8409347-8409390)
chr8 (557-600)||(28190346-28190389)
chr8 (551-598)||(29482458-29482504)
chr8 (472-522)||(8049273-8049323)
chr8 (552-602)||(31976782-31976831)
chr8 (491-554)||(42739969-42740034)
chr8 (546-599)||(1087963-1088016)
chr8 (546-591)||(10605902-10605947)
chr8 (454-523)||(23011735-23011804)
chr8 (454-523)||(33986005-33986074)
[»] chr2 (37 HSPs)
chr2 (454-554)||(27033491-27033593)
chr2 (454-557)||(41461568-41461673)
chr2 (545-609)||(8736071-8736135)
chr2 (545-609)||(2925030-2925094)
chr2 (545-602)||(1583445-1583502)
chr2 (545-602)||(11141684-11141741)
chr2 (454-523)||(11716409-11716478)
chr2 (545-602)||(44256013-44256070)
chr2 (545-599)||(769410-769464)
chr2 (551-609)||(13018130-13018188)
chr2 (551-609)||(14306470-14306528)
chr2 (545-599)||(33188906-33188960)
chr2 (454-523)||(14365701-14365770)
chr2 (454-523)||(14537200-14537269)
chr2 (454-518)||(14365793-14365857)
chr2 (546-602)||(39630606-39630662)
chr2 (454-520)||(784794-784860)
chr2 (454-557)||(784846-784951)
chr2 (545-599)||(7167305-7167359)
chr2 (545-602)||(7309549-7309606)
chr2 (545-602)||(28021819-28021876)
chr2 (545-602)||(35047314-35047371)
chr2 (545-602)||(44205304-44205361)
chr2 (545-605)||(19231126-19231186)
chr2 (545-609)||(21504830-21504893)
chr2 (551-602)||(41585307-41585358)
chr2 (545-599)||(3092624-3092678)
chr2 (554-599)||(17906029-17906074)
chr2 (454-522)||(7228016-7228084)
chr2 (551-599)||(19072259-19072306)
chr2 (554-598)||(32839304-32839348)
chr2 (554-589)||(32839842-32839877)
chr2 (551-589)||(7611547-7611585)
chr2 (454-520)||(17180298-17180364)
chr2 (461-523)||(30698289-30698351)
chr2 (454-523)||(10480120-10480189)
chr2 (454-523)||(17905655-17905724)
[»] chr4 (49 HSPs)
chr4 (454-554)||(10128030-10128132)
chr4 (454-554)||(15660239-15660341)
chr4 (454-554)||(42844544-42844646)
chr4 (546-608)||(52294705-52294767)
chr4 (545-602)||(2126216-2126273)
chr4 (454-548)||(36455908-36456004)
chr4 (545-608)||(31947951-31948014)
chr4 (556-602)||(17727800-17727846)
chr4 (545-602)||(41139850-41139907)
chr4 (554-602)||(16299890-16299938)
chr4 (551-609)||(4490404-4490461)
chr4 (491-554)||(26250965-26251030)
chr4 (454-520)||(28845963-28846029)
chr4 (454-523)||(14982281-14982350)
chr4 (458-548)||(28845876-28845968)
chr4 (454-523)||(36456015-36456084)
chr4 (454-523)||(41498579-41498648)
chr4 (454-523)||(49111401-49111470)
chr4 (454-523)||(55266864-55266933)
chr4 (454-554)||(41498490-41498593)
chr4 (553-609)||(42776471-42776527)
chr4 (553-609)||(47108606-47108662)
chr4 (545-599)||(46242739-46242791)
chr4 (454-520)||(857331-857397)
chr4 (461-523)||(1539649-1539711)
chr4 (455-538)||(7352814-7352899)
chr4 (545-591)||(35470501-35470547)
chr4 (454-548)||(1107114-1107210)
chr4 (454-523)||(1112606-1112675)
chr4 (454-519)||(7352905-7352970)
chr4 (454-519)||(16516172-16516237)
chr4 (545-602)||(21782352-21782408)
chr4 (553-602)||(27284333-27284382)
chr4 (454-523)||(31473850-31473919)
chr4 (545-602)||(54566552-54566609)
chr4 (455-523)||(4896721-4896789)
chr4 (455-523)||(10127976-10128044)
chr4 (557-601)||(17727436-17727480)
chr4 (456-523)||(10633035-10633102)
chr4 (554-589)||(24705716-24705751)
chr4 (551-597)||(13088430-13088476)
chr4 (454-500)||(31742876-31742922)
chr4 (545-591)||(40547893-40547939)
chr4 (557-599)||(56118286-56118328)
chr4 (454-519)||(467896-467959)
chr4 (454-511)||(4441338-4441395)
chr4 (454-519)||(5715745-5715810)
chr4 (454-523)||(11040969-11041037)
chr4 (553-602)||(28751857-28751906)
[»] chr1 (46 HSPs)
chr1 (458-554)||(34756432-34756530)
chr1 (546-609)||(41822179-41822242)
chr1 (454-548)||(15034660-15034756)
chr1 (545-609)||(44571570-44571634)
chr1 (454-554)||(38277416-38277518)
chr1 (454-554)||(50005080-50005182)
chr1 (454-551)||(27804324-27804423)
chr1 (454-523)||(15034748-15034817)
chr1 (454-523)||(23536068-23536137)
chr1 (545-602)||(28632239-28632296)
chr1 (551-599)||(32128468-32128516)
chr1 (551-603)||(41577918-41577970)
chr1 (551-602)||(15467599-15467650)
chr1 (456-548)||(45565397-45565491)
chr1 (491-554)||(32572960-32573025)
chr1 (491-554)||(40264068-40264133)
chr1 (551-609)||(44571063-44571121)
chr1 (454-523)||(4038076-4038145)
chr1 (454-523)||(6470689-6470758)
chr1 (454-519)||(26501086-26501151)
chr1 (454-523)||(30190225-30190294)
chr1 (546-609)||(32647672-32647736)
chr1 (551-598)||(946766-946813)
chr1 (545-588)||(34003762-34003805)
chr1 (551-602)||(48953931-48953982)
chr1 (555-609)||(6470335-6470389)
chr1 (454-520)||(27935577-27935643)
chr1 (491-554)||(37214875-37214939)
chr1 (556-602)||(41822841-41822887)
chr1 (454-548)||(4038137-4038233)
chr1 (454-523)||(24273223-24273292)
chr1 (454-519)||(32287940-32288005)
chr1 (556-609)||(37447532-37447584)
chr1 (556-609)||(50472106-50472159)
chr1 (546-602)||(10166875-10166931)
chr1 (545-609)||(35499429-35499492)
chr1 (545-589)||(39887445-39887489)
chr1 (485-557)||(5474452-5474526)
chr1 (546-589)||(37447008-37447050)
chr1 (457-523)||(27804269-27804335)
chr1 (563-608)||(32128296-32128340)
chr1 (554-602)||(41481067-41481116)
chr1 (454-523)||(43622981-43623050)
chr1 (462-523)||(44570687-44570748)
chr1 (454-523)||(47165215-47165284)
chr1 (456-517)||(51847855-51847916)
[»] chr5 (48 HSPs)
chr5 (551-602)||(1209051-1209102)
chr5 (454-548)||(20523195-20523291)
chr5 (545-609)||(33995550-33995614)
chr5 (554-609)||(17541990-17542045)
chr5 (551-609)||(13391055-13391113)
chr5 (545-609)||(22304840-22304905)
chr5 (551-602)||(12480285-12480336)
chr5 (454-520)||(40809342-40809408)
chr5 (545-599)||(41761861-41761915)
chr5 (545-602)||(927680-927737)
chr5 (454-523)||(15373961-15374030)
chr5 (454-548)||(15374022-15374118)
chr5 (455-523)||(2721560-2721628)
chr5 (551-602)||(14835176-14835227)
chr5 (551-609)||(28489847-28489905)
chr5 (559-609)||(33146474-33146524)
chr5 (454-523)||(9764427-9764496)
chr5 (551-608)||(17492796-17492853)
chr5 (454-523)||(22303870-22303939)
chr5 (454-523)||(22766953-22767022)
chr5 (455-523)||(19533907-19533975)
chr5 (551-598)||(22302858-22302905)
chr5 (454-517)||(23092057-23092120)
chr5 (454-548)||(2316379-2316476)
chr5 (454-520)||(15804323-15804389)
chr5 (454-523)||(2316468-2316536)
chr5 (454-523)||(3563278-3563347)
chr5 (454-548)||(9764339-9764435)
chr5 (454-523)||(20523134-20523203)
chr5 (454-523)||(25935290-25935359)
chr5 (454-523)||(26281269-26281338)
chr5 (454-523)||(37722894-37722963)
chr5 (454-523)||(40090414-40090483)
chr5 (555-603)||(6955125-6955173)
chr5 (545-609)||(8255341-8255405)
chr5 (546-602)||(15270530-15270585)
chr5 (545-589)||(22303515-22303559)
chr5 (455-548)||(32389974-32390069)
chr5 (454-522)||(32470883-32470951)
chr5 (546-608)||(9893802-9893867)
chr5 (454-517)||(33245378-33245441)
chr5 (554-589)||(37241289-37241324)
chr5 (454-513)||(40643916-40643975)
chr5 (457-523)||(16515009-16515074)
chr5 (552-602)||(31368238-31368288)
chr5 (454-523)||(16515107-16515176)
chr5 (546-599)||(32249766-32249818)
chr5 (454-523)||(32390061-32390130)
[»] chr3 (60 HSPs)
chr3 (472-554)||(31070425-31070509)
chr3 (545-609)||(24241817-24241881)
chr3 (551-609)||(55460651-55460709)
chr3 (552-609)||(6836666-6836723)
chr3 (454-523)||(44692911-44692980)
chr3 (546-607)||(46707004-46707065)
chr3 (546-602)||(36397624-36397680)
chr3 (551-602)||(28092050-28092101)
chr3 (545-609)||(7976929-7976994)
chr3 (454-548)||(44436259-44436355)
chr3 (454-523)||(46672805-46672874)
chr3 (546-602)||(34396257-34396313)
chr3 (546-602)||(35279583-35279639)
chr3 (546-602)||(43863598-43863654)
chr3 (551-598)||(53470068-53470115)
chr3 (491-554)||(46429434-46429499)
chr3 (545-602)||(671301-671358)
chr3 (454-523)||(9129433-9129502)
chr3 (454-523)||(9137540-9137609)
chr3 (454-523)||(27251983-27252052)
chr3 (560-609)||(31189025-31189074)
chr3 (545-598)||(38506601-38506654)
chr3 (454-548)||(44692823-44692919)
chr3 (454-523)||(47767433-47767502)
chr3 (546-609)||(7302773-7302836)
chr3 (551-589)||(13176305-13176343)
chr3 (551-589)||(13339205-13339243)
chr3 (545-599)||(37054774-37054827)
chr3 (545-599)||(42005591-42005644)
chr3 (545-599)||(48947959-48948013)
chr3 (454-523)||(7302347-7302416)
chr3 (454-548)||(9129345-9129441)
chr3 (454-548)||(9137452-9137548)
chr3 (545-602)||(21731298-21731355)
chr3 (553-609)||(34936550-34936607)
chr3 (454-523)||(37054395-37054464)
chr3 (454-523)||(42005955-42006024)
chr3 (454-523)||(49457344-49457413)
chr3 (546-599)||(53129543-53129595)
chr3 (545-589)||(31022051-31022095)
chr3 (546-594)||(46636203-46636251)
chr3 (545-608)||(44288131-44288194)
chr3 (551-602)||(47337502-47337553)
chr3 (461-523)||(19475824-19475886)
chr3 (457-523)||(21307534-21307600)
chr3 (553-591)||(34088959-34088997)
chr3 (454-520)||(39110395-39110461)
chr3 (459-517)||(44288467-44288525)
chr3 (495-554)||(47284268-47284329)
chr3 (456-522)||(52527039-52527105)
chr3 (560-609)||(2732951-2733000)
chr3 (454-523)||(5415784-5415853)
chr3 (454-523)||(5415872-5415941)
chr3 (454-523)||(34088572-34088641)
chr3 (454-523)||(36397991-36398060)
chr3 (504-554)||(39215889-39215941)
chr3 (556-609)||(47767816-47767869)
chr3 (454-523)||(48947606-48947675)
chr3 (546-595)||(50168307-50168356)
chr3 (572-609)||(52527416-52527453)
[»] scaffold0129 (1 HSPs)
scaffold0129 (545-609)||(19413-19477)
[»] chr6 (20 HSPs)
chr6 (455-554)||(9763014-9763115)
chr6 (454-548)||(9285648-9285744)
chr6 (455-523)||(6919710-6919778)
chr6 (457-523)||(15299514-15299579)
chr6 (545-602)||(8475508-8475565)
chr6 (454-523)||(28918166-28918235)
chr6 (454-519)||(29889441-29889506)
chr6 (454-519)||(34244987-34245052)
chr6 (551-599)||(1368859-1368907)
chr6 (554-602)||(31413248-31413296)
chr6 (546-609)||(28918537-28918600)
chr6 (454-517)||(776081-776144)
chr6 (454-538)||(776152-776238)
chr6 (454-517)||(8574696-8574759)
chr6 (454-517)||(8574760-8574823)
chr6 (556-602)||(10105396-10105442)
chr6 (551-589)||(15832992-15833030)
chr6 (454-523)||(1368478-1368547)
chr6 (454-548)||(6919770-6919865)
chr6 (466-523)||(15299412-15299469)
[»] scaffold0400 (2 HSPs)
scaffold0400 (551-609)||(4126-4184)
scaffold0400 (454-523)||(4501-4570)
[»] scaffold0365 (2 HSPs)
scaffold0365 (551-609)||(4770-4828)
scaffold0365 (454-523)||(5145-5214)
[»] scaffold0009 (1 HSPs)
scaffold0009 (454-523)||(41998-42067)
[»] scaffold1562 (2 HSPs)
scaffold1562 (455-523)||(494-562)
scaffold1562 (454-516)||(406-468)
[»] scaffold1158 (2 HSPs)
scaffold1158 (455-523)||(2031-2099)
scaffold1158 (454-516)||(2125-2187)
[»] scaffold0318 (1 HSPs)
scaffold0318 (553-602)||(3244-3293)
[»] scaffold0301 (1 HSPs)
scaffold0301 (545-602)||(7531-7588)
[»] scaffold0169 (2 HSPs)
scaffold0169 (454-523)||(4076-4145)
scaffold0169 (561-609)||(4414-4462)
[»] scaffold0048 (1 HSPs)
scaffold0048 (455-523)||(82945-83013)
[»] scaffold0014 (1 HSPs)
scaffold0014 (552-602)||(223419-223468)
[»] scaffold0002 (1 HSPs)
scaffold0002 (551-589)||(130645-130683)
[»] scaffold0047 (1 HSPs)
scaffold0047 (551-589)||(49962-50000)
[»] scaffold0027 (1 HSPs)
scaffold0027 (454-519)||(10887-10952)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 29065820 - 29065922
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  29065820 gagtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaata 29065919  T
Q  552 att 554  Q
    |||    
T  29065920 att 29065922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 5644678 - 5644780
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||| ||||| |||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| ||||||| |||||||||||||    
T  5644678 gagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaacccacctcaaaata 5644777  T
Q  552 att 554  Q
    |||    
T  5644778 att 5644780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 30080478 - 30080414
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  30080478 caaaaaaattaaaatttataaaagtttcccaaaaatgataacaatgaaattttttattactccat 30080414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 551 - 602
Target Start/End: Complemental strand, 37460634 - 37460583
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37460634 aattaaaatttataaaagttgcccaaaaatgatgacaatgaaattttttatt 37460583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 554
Target Start/End: Complemental strand, 21636038 - 21635941
Alignment:
Q  459 tgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||||   ||||||||||  |||| ||||||||||||| |||| |||||||||||| ||  |||||| ||||||||||||||||||||||||    
T  21636038 tgtttggatggggaaatgttttgagggaatgtaatgttttgaaggaatttaactactttgagatgaattctattgtttgaatccacctcaaaataatt 21635941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 19865727 - 19865670
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  19865727 caaaaaaattaaaatttataaaagttgctcaaaaatgatgacaatgaaattttttatt 19865670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 35456184 - 35456248
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||    
T  35456184 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatatttttattactccat 35456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 30629438 - 30629492
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  30629438 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaattttttt 30629492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 2057396 - 2057465
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  2057396 gagtgtgtttggatgggggaatgttttgagcgaatgtaatgttttgagggaattcaactactttgaggtg 2057465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 2411691 - 2411748
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  2411691 caaaaaaattaaaatttataaaagttgtccaaaaatgatgacaatgaatttttttatt 2411748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 9784624 - 9784567
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  9784624 caaaaaaattaaaatttataaaagttgcccaaaaattatgacaatgaatttttttatt 9784567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 40496098 - 40496155
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  40496098 caaaaaaattaaaatttataaaagttctccaaaaatgatgacaatgaatttttttatt 40496155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 14602941 - 14602877
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||  |||||||| ||||||    
T  14602941 caaaaaaattaaaatttataaaagttgcccaaaaatgatgactatgaatatttttattactccat 14602877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 22391272 - 22391208
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| ||||||| ||||||||||||   ||||||||||| ||||||||||||||||||||||||    
T  22391272 caaaaaaattaaagtttataaaagttgttcaaaaatgatggcaatgaaattttttatttctccat 22391208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 28538846 - 28538790
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  28538846 aaaaaaattaaaatttataaaagttgtccaaaaatgatgacaatgaatttttttatt 28538790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 46069423 - 46069494
Alignment:
Q  485 gaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||| ||||||||||| | ||||||||||||||||||||  |||||| ||||||||||| ||||||||||||    
T  46069423 gaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccatctcaaaataatt 46069494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 14790467 - 14790524
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||    
T  14790467 aattaaaatttataaaagttgcccaaaaatgatggcaatg-aattttttttttctccat 14790524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 40110738 - 40110835
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcg-tttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||||||| |||||  |||||| | ||||||| |||||||||    
T  40110738 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgttttgaattcacctcaaa 40110835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 6498823 - 6498758
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||| ||||||||    
T  6498823 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttga 6498758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 18789304 - 18789235
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||| |||||| ||||||||||||| ||| | ||||||| |||||| |||||    
T  18789304 gagtgtgtttggatggaggaatattttgagagaatataatgttatgagggaattcaaatactttaaggtg 18789235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 40667717 - 40667774
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||| ||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  40667717 caaaaaaatttaaattaataaaagttgcccaaaaatgatgacaatgaatttttttatt 40667774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 42816903 - 42816959
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  42816903 aaaaaaattaaaatttataaaagttgctcaaaaatgatgacaatgaatttttgtatt 42816959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 43955671 - 43955603
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||||||| |||||    
T  43955671 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtg 43955603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 454 - 517
Target Start/End: Original strand, 43955518 - 43955581
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||    
T  43955518 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactacttt 43955581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 36328492 - 36328434
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||||||||  ||||||||||||  |||||||||||| ||| ||||||    
T  36328492 aattaaaatttataaaagttgtccaaaaatgatggtaatgaaatttttaattactccat 36328434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 39342330 - 39342277
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  39342330 caaaaaaattaaaatttataaaagttgcccaaaaat-atgacaatgaattttttt 39342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 9784989 - 9784920
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| || |||||||| | ||||||| ||||||| ||||    
T  9784989 gagtgtgtttggatggaggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtg 9784920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 23548669 - 23548600
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| || |||||||| | ||||||| ||||||| ||||    
T  23548669 gagtgtgtttggatggaggaatgttttgagggaatgtattgttttgaggaaattcaaatactttggggtg 23548600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 26162195 - 26162126
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  26162195 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 26162126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 31632723 - 31632792
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  31632723 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 31632792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 522
Target Start/End: Complemental strand, 34399007 - 34398938
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaag-caattcaactactttgaggt 522  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| |  |||||||||||||||||||    
T  34399007 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtgaattcaactactttgaggt 34398938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 40110896 - 40110827
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||   ||||||| ||  |||| ||||||||||| | ||||||||||||||||||||    
T  40110896 gagtgtgtttggatggggaaatgtttcgagggaatgtaatgttttgagggaattcaactactttgaggtg 40110827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 44915196 - 44915265
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||| ||||||  |||  ||||||||||||| ||||||||||||||||||||    
T  44915196 gagtgtgtttggatgagagaattttttgagggaacgtaatgttttgaaggaattcaactactttgaggtg 44915265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 30524256 - 30524320
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttg 518  Q
    |||||||| ||||||||  ||||||||||| |||| ||||||||||| | ||||||| |||||||    
T  30524256 gagtgtgtatggatggagtaatgttttgaaggaatgtaatgttttgagggaattcaaatactttg 30524320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 599
Target Start/End: Complemental strand, 41442768 - 41442720
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||| ||||||||||||||||||||| |||||||||||| | |||||||    
T  41442768 aattgaaatttataaaagttacccaataatgatgacaataatatttttt 41442720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 593
Target Start/End: Original strand, 43791403 - 43791451
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaa 593  Q
    ||||| ||||||||| |||||||||| || |||||||||||||||||||    
T  43791403 caaaaaaattaaaatatataaaagttgccaaaaaatgatgacaatgaaa 43791451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 597
Target Start/End: Original strand, 45967296 - 45967336
Alignment:
Q  557 aatttataaaagttacccaaaaatgatgacaatgaaatttt 597  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  45967296 aatttataaaagtttcccaaaaataatgacaatgaaatttt 45967336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 597
Target Start/End: Complemental strand, 25188953 - 25188910
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaatttt 597  Q
    ||||||||| ||||||| || |||||||||||||||||||||||    
T  25188953 taaaatttacaaaagttgccaaaaaatgatgacaatgaaatttt 25188910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 602
Target Start/End: Original strand, 26416312 - 26416357
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  26416312 aaatttataaaagttgcccaaaaat-atgaaaatgaaattttttatt 26416357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 46700543 - 46700597
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||  || ||||| ||||||| |||||||||||    
T  46700543 caaaaaaattaaaatttataaaagtccccgaaaaacgatgacattgaaatttttt 46700597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 28539226 - 28539157
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| || |||||||| | ||||||| ||||||| ||||    
T  28539226 gagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtg 28539157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 29065977 - 29065908
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| ||||||||| |   ||| ||||||||||| | ||||||| || |||||||||    
T  29065977 gagtgtgtttggatggaggaatgttttaaggtaatgtaatgttttgagggaattcaattattttgaggtg 29065908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 34388423 - 34388354
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||| |||   |||||||||||  |||| |||| |||||| | ||||||||||||||||||||    
T  34388423 gagtgtgtttgaatgatggaatgttttgagggaatgtaatattttgagggaattcaactactttgaggtg 34388354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 35777013 - 35776944
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  35777013 gagtgtgtttggatgagggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 35776944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 47)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 3853617 - 3853719
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  3853617 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactactttgaggtgaattctattgtttgaatccacctcaaaata 3853716  T
Q  552 att 554  Q
    |||    
T  3853717 att 3853719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 3858075 - 3858177
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  3858075 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactactttgaggtgaattctattgtttgaatccacctcaaaata 3858174  T
Q  552 att 554  Q
    |||    
T  3858175 att 3858177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 9983034 - 9983091
Alignment:
Q  552 attaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9983034 attaaaatttataaaagttgcccaaaaatgatgacaatgaaattttttatttttccat 9983091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 40733804 - 40733748
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  40733804 aaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 40733748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 44346390 - 44346334
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  44346390 aaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 44346334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 33377001 - 33376947
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  33377001 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaattttttt 33376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 40046805 - 40046871
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | |||||||||||||||||    
T  40046805 gagtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaattcaactactttgag 40046871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 472 - 554
Target Start/End: Complemental strand, 13404967 - 13404883
Alignment:
Q  472 gaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||||  |||| ||||||||||| | ||||||||||||||||| ||  || ||| ||||||||||||||||||||||||    
T  13404967 gaatgttttgagggaatgtaatgttttgagggaattcaactactttgagatgaattttattgtttgaatccacctcaaaataatt 13404883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 17111027 - 17110931
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    |||||||||||||||||  ||||||||||  |||| ||||||||||| | |||||||||||||| |||||  |||||| |||||||| || ||||||    
T  17111027 gagtgtgtttggatggagaaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaa 17110931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 43185359 - 43185416
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||    
T  43185359 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttctttatt 43185416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 44889355 - 44889420
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||| | ||||||| ||||||||    
T  44889355 gagtgtgtttggatggaggaatgttttgagggaatataatgttttgagggaattcaaatactttga 44889420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 554 - 602
Target Start/End: Original strand, 7079686 - 7079734
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  7079686 taaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 7079734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 33902668 - 33902732
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttg 518  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | |||||||||||||||    
T  33902668 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttg 33902732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 29611711 - 29611762
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  29611711 aattaaaatttatgaaagttgcccaaaaatgatgacaatgaatttttttatt 29611762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 28324744 - 28324678
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||||| ||||||| ||| |||||    
T  28324744 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgag 28324678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 609
Target Start/End: Original strand, 34009082 - 34009132
Alignment:
Q  559 tttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||||||||    
T  34009082 tttataaaagttgcccaaaaatgatggcaatgaaattctttatttctccat 34009132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 609
Target Start/End: Original strand, 6416524 - 6416569
Alignment:
Q  564 aaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  6416524 aaaagttgcccaaaaatgatgacaatgaaattttttattactccat 6416569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 29257073 - 29257026
Alignment:
Q  555 aaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||    
T  29257073 aaaatttataaaagttgcccaaaaatgatgacaatgaatatttttatt 29257026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 8689138 - 8689196
Alignment:
Q  459 tgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||  ||||||||||| |||| ||||||||||| | ||||||||||||||    
T  8689138 tgtttggatggagaaatgttttgaaggaatgtaatgttttgagggaattcaactacttt 8689196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 10593452 - 10593505
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||    
T  10593452 caaaataattaaa-tttataaaatttgcccaaaaatgatgacaatgaattttttt 10593505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 17110870 - 17110936
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||   ||||||||||  |||| ||||||||||| | |||||||||||||||||    
T  17110870 gagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaattcaactactttgag 17110936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 26520146 - 26520088
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||| |||||||||  ||| | |||||||||||||| ||||||    
T  26520146 aattaaaatttataaaagttgcccaaaaatattgatagtgaaattttttattactccat 26520088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 31980212 - 31980163
Alignment:
Q  552 attaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  31980212 attaaaatttataaa-gttgcccaaaaatgatgacaatgaatttttttatt 31980163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 42711438 - 42711372
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    |||||||||||||| |  |||||||||||  |||| ||||||||||| | |||||||||||||||||    
T  42711438 gagtgtgtttggattggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgag 42711372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 515614 - 515549
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||| | | | ||||| ||||||||    
T  515614 gagtgtgtttggatggaggaatgttttgaaggaatgtaatgttttaagggagttcaaatactttga 515549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 549
Target Start/End: Complemental strand, 4156324 - 4156228
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaa 549  Q
    |||||||||||||||  |||| ||||||  |||| ||||||||||| | |||||||||||||| || ||  |||||| |||||||| || |||||||    
T  4156324 agtgtgtttggatgggagaatattttgagggaatgtaatgttttgagggaattcaactactttaagatgaattctattgtttgaattcaactcaaaa 4156228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 8049556 - 8049609
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||||||||||||||| ||| |||  ||||||||||||||| |||||||||||    
T  8049556 aaaataattaaaatttacaaaggttgtccaaaaatgatgacattgaaatttttt 8049609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 598
Target Start/End: Original strand, 13144972 - 13145017
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||    
T  13144972 ttaaaatttataaaagtttctcaaaaatgatgacattgaaattttt 13145017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 24044961 - 24045030
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||||||||||  |||| ||||||||||||| ||||||| ||| ||||||||    
T  24044961 gagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtg 24045030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 31976288 - 31976235
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    ||||| ||||||||||||||||||||  ||||||| ||||||||| ||||||||    
T  31976288 caaaagaattaaaatttataaaagttctccaaaaacgatgacaataaaattttt 31976235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 33377379 - 33377310
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  ||||||| |||||||| | ||||||| ||||||| ||||    
T  33377379 gagtgtgtttggatgggggaatgttttgagggaatatattgttttgagggaattcaaatactttggggtg 33377310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 599
Target Start/End: Complemental strand, 35404448 - 35404403
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||    
T  35404448 taaaatttataaaaattgcccaaaaatgatgacaatgaattttttt 35404403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 608
Target Start/End: Complemental strand, 35978752 - 35978699
Alignment:
Q  555 aaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctcca 608  Q
    ||||||||||||| || |||||||||| ||||| |||||||||||||| |||||    
T  35978752 aaaatttataaaatttccccaaaaatggtgacattgaaattttttattactcca 35978699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 36103102 - 36103167
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||| | | ||||||| ||||||||    
T  36103102 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttga 36103167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 589
Target Start/End: Original strand, 24045342 - 24045386
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  24045342 caaaaaaattgaaatttataaaagttgcccaaaaatgatgacaat 24045386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 589
Target Start/End: Original strand, 24051650 - 24051694
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  24051650 caaaaaaattgaaatttataaaagttgcccaaaaatgatgacaat 24051694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 602
Target Start/End: Complemental strand, 36624971 - 36624923
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||| || ||||||||||||||| | ||||||||||    
T  36624971 taaaatttataaaagttgcctaaaaatgatgacaataatattttttatt 36624923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 602
Target Start/End: Complemental strand, 8409390 - 8409347
Alignment:
Q  559 tttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||  |||||||||||||||||||| |||||||||    
T  8409390 tttataaaagttgtccaaaaatgatgacaatgaatttttttatt 8409347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 28190389 - 28190346
Alignment:
Q  557 aatttataaaagttacccaaaaatgatgacaatgaaatttttta 600  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  28190389 aatttataaaagttgcataaaaatgatgacaatgaaatttttta 28190346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 598
Target Start/End: Complemental strand, 29482504 - 29482458
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  29482504 aattaaaatttataaaagttgcccaaaaat-atgacaatgaatttttt 29482458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 8049273 - 8049323
Alignment:
Q  472 gaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggt 522  Q
    |||||||||||  |||||||||||||||| | ||||||| |||||||||||    
T  8049273 gaatgttttgagggaatataatgttttgagggaattcaaatactttgaggt 8049323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 31976831 - 31976782
Alignment:
Q  552 attaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| ||| | ||||||||||||||||||| |||||||||    
T  31976831 attaaaatttataaa-gttgctcaaaaatgatgacaatgaatttttttatt 31976782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 42739969 - 42740034
Alignment:
Q  491 aatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||| | ||||||||||||||||| ||  || ||| ||| ||||||||||||||||||||    
T  42739969 aatgttttgagggaattcaactactttgagatgaattttattgttagaatccacctcaaaataatt 42740034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 1088016 - 1087963
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||| |||||| ||||||||||||| ||||||||| |||||||| || ||||||    
T  1088016 aaaaaaattaatatttataaaagttgcccaaaaataatgacaattaattttttt 1087963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 591
Target Start/End: Original strand, 10605902 - 10605947
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatga 591  Q
    ||||||||| |||||||||||||||  |||||||||| ||||||||    
T  10605902 aaaataattgaaatttataaaagttgaccaaaaatgacgacaatga 10605947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 23011735 - 23011804
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||| ||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  23011735 gagtgtgtttggacgggagaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 23011804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 33986005 - 33986074
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||| |||||  ||| |||||||||||   ||||||| ||||||||||||    
T  33986005 gagtgtgtttggatgggggaatgtcttgaagtaatgtaatgttttgagagaattcaaatactttgaggtg 33986074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 27033491 - 27033593
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||| | ||||||||||||||||||||  |||||| ||||||||||||||||||| |    
T  27033491 gagtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaaga 27033590  T
Q  552 att 554  Q
    |||    
T  27033591 att 27033593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 41461673 - 41461568
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||| |||||||||  |||||| |||||||||||||||||||||    
T  41461673 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactattttgaggtgaattctattgtttgaatccacctcaaaata 41461574  T
Q  552 attaaa 557  Q
    ||||||    
T  41461573 attaaa 41461568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 8736135 - 8736071
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  8736135 caaaaaaattaaaatttataaaagttgcccaaaaatgatggcaatgaaattttttatttctccat 8736071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 2925030 - 2925094
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  2925030 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaaatttttgattactccat 2925094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 1583502 - 1583445
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  1583502 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 1583445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 11141684 - 11141741
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  11141684 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 11141741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 11716409 - 11716478
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  11716409 gagtgtgtttggatggaagaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 11716478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 44256013 - 44256070
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  44256013 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 44256070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 769410 - 769464
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  769410 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaattttttt 769464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 13018130 - 13018188
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  13018130 aattaaaacttataaaagttgcccaaaaatgatgacaatgaatttttttattactccat 13018188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 14306528 - 14306470
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||||    
T  14306528 aattaaaatttataaaagttgtccaaaaatgatgacagtgaaattttttattactccat 14306470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 33188960 - 33188906
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  33188960 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaattttttt 33188906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 14365701 - 14365770
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  14365701 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 14365770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 14537200 - 14537269
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  14537200 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaattcaactactttgaggtg 14537269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 454 - 518
Target Start/End: Complemental strand, 14365857 - 14365793
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttg 518  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | |||||||||||||||    
T  14365857 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttg 14365793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 39630606 - 39630662
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  39630606 aaaaaaattaaaatttataaaagttgtccaaaaatgatgacaatgaatttttttatt 39630662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 784794 - 784860
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    |||||||||||||||||  ||||||||||  |||| ||||||||||||| |||| ||||||||||||    
T  784794 gagtgtgtttggatggaaaaatgttttgagggaatgtaatgttttgaaggaatttaactactttgag 784860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 784951 - 784846
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||  |||| ||||||  |||| ||||||||||| | |||||||||||||| |||||  |||||| |||||||| || |||||| ||    
T  784951 gagtgtgtttggatgggggaatattttgatggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagta 784852  T
Q  552 attaaa 557  Q
     |||||    
T  784851 gttaaa 784846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 7167359 - 7167305
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  7167359 caaaaaaattgaaatttataaaagttgcccaaaaatgatgacaataaaatttttt 7167305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 7309606 - 7309549
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||  ||||||||    
T  7309606 caaaaaaattaaaatttataaaagttgcacaaaaatgatgacaatgaatatttttatt 7309549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 28021876 - 28021819
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  28021876 caaaaaaattaaaatttataaaagttgtccaaaaaaaatgacaatgaaattttttatt 28021819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 35047371 - 35047314
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||  | |||||||||||||||||| |||||||||    
T  35047371 caaaaaaattaaaatttataaaagttggcaaaaaatgatgacaatgaatttttttatt 35047314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 44205361 - 44205304
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||  |||||||| || ||||||||||||||||||    
T  44205361 caaaaaaattaaaatttataaaagttgtccaaaaataataacaatgaaattttttatt 44205304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 605
Target Start/End: Complemental strand, 19231186 - 19231126
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttct 605  Q
    ||||| || ||| ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  19231186 caaaaaaaataatatttataaaagttgcccaaaaattacgacaatgaaattttttatttct 19231126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 21504830 - 21504893
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||||    
T  21504830 caaaaaaattaaaatttataaaagttgcccaaaaat-atgataatgaaattttttactactccat 21504893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 602
Target Start/End: Complemental strand, 41585358 - 41585307
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||||||| ||||||||| || |||||||| |||||||||    
T  41585358 aattaaaatttataaaagttgcccaaaaattataacaatgaatttttttatt 41585307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 3092624 - 3092678
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||| || ||||||    
T  3092624 caaaaaaattaaaatttataaaagttgcccaaaaataatgacaattaattttttt 3092678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 599
Target Start/End: Original strand, 17906029 - 17906074
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  17906029 taaaacttataaaagttgcccaaaaatgatgacaatgaattttttt 17906074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 454 - 522
Target Start/End: Complemental strand, 7228084 - 7228016
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggt 522  Q
    ||||||||||||||||   |||||||||| ||||| ||||||||||||| |||| || ||| |||||||    
T  7228084 gagtgtgtttggatggggaaatgttttgagagaatgtaatgttttgaaggaatttaaataccttgaggt 7228016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 599
Target Start/End: Original strand, 19072259 - 19072306
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  19072259 aattacaatttataaaagtttcccaaaaat-atgacaatgaaatttttt 19072306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 598
Target Start/End: Complemental strand, 32839348 - 32839304
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||    
T  32839348 taaaatttataaaagttgcccaaaaatgatgataataaaattttt 32839304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 589
Target Start/End: Complemental strand, 32839877 - 32839842
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32839877 taaaatttataaaagttgcccaaaaatgatgacaat 32839842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 589
Target Start/End: Complemental strand, 7611585 - 7611547
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  7611585 aattaaaatttataaaagttgcccaaaaattatgacaat 7611547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 17180298 - 17180364
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    |||||||||||||||   |||||||||||  |||| ||||||||||| | |||||||||| ||||||    
T  17180298 gagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactattttgag 17180364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 30698289 - 30698351
Alignment:
Q  461 tttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||  |||||||||||  |||| ||||||||||||| ||||||| ||| ||||||||    
T  30698289 tttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtg 30698351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 10480120 - 10480189
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| |||||||  || | ||||||| ||||||||||||    
T  10480120 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttacgagggaattcaaatactttgaggtg 10480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 17905655 - 17905724
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||| |||||   ||||||||||| ||||| ||||||||| ||| ||||||| || |||||||||    
T  17905655 gagtgtgttaggatgagggaatgttttgagagaatgtaatgttttaaaggaattcaaatattttgaggtg 17905724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 10128132 - 10128030
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    |||||| |||||||||  ||||||||||| ||||| ||||||||||| | ||||||||||||||||| ||  |||||| |||||||||||||||||||||    
T  10128132 gagtgtatttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttgagatgaattctattgtttgaatccacctcaaaata 10128033  T
Q  552 att 554  Q
    |||    
T  10128032 att 10128030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 15660341 - 15660239
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    |||||||||||||||   |||||||||||  |||| ||||||||||| | ||||||||||||||||| ||  |||||| ||||||||||| |||||||||    
T  15660341 gagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgagctgaattctattgtttgaatccatctcaaaata 15660242  T
Q  552 att 554  Q
    |||    
T  15660241 att 15660239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 42844544 - 42844646
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    |||||||| | |||||  |||||||||||  |||| |||| |||||||| ||||||||||||||||||||  |||||| |||||||||||| ||||||||    
T  42844544 gagtgtgtatagatgggggaatgttttgagggaatgtaatattttgaaggaattcaactactttgaggtgaattctattgtttgaatccacttcaaaata 42844643  T
Q  552 att 554  Q
    |||    
T  42844644 att 42844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 52294767 - 52294705
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctcca 608  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||    
T  52294767 aaaaaaattaaaatttataaaagttccccaaaaatgatgacattgaaattttttattactcca 52294705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 2126216 - 2126273
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  2126216 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 2126273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 36455908 - 36456004
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||||||| |||||  |||||| |||||||| |||||||||    
T  36455908 gagtgtgtttggatgggggaatgttttgagggaatctaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaa 36456004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 31947951 - 31948014
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctcca 608  Q
    ||||| |||||||||||||||||||| ||||||||||||| || |||||||||||||| |||||    
T  31947951 caaaaaaattaaaatttataaaagtttcccaaaaatgatgccattgaaattttttattactcca 31948014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 602
Target Start/End: Original strand, 17727800 - 17727846
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  17727800 aaatttataaaagttgcccaaaaatgatgacaatgaaattttttatt 17727846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 41139850 - 41139907
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  41139850 caaaaaaaataaaatttataaaagttgcccaaaaatgatgacaatgaaattttgtatt 41139907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 554 - 602
Target Start/End: Complemental strand, 16299938 - 16299890
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16299938 taaaatttataaaagttgtccaaaaatgatgacaatgaaattttttatt 16299890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 4490404 - 4490461
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||    
T  4490404 aattaaaatttataaaagttgcccaaaaatgatgccaatg-aattttttattactccat 4490461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 554
Target Start/End: Complemental strand, 26251030 - 26250965
Alignment:
Q  491 aatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||| | ||||||||||||||||||||  ||||||  |||||||||||||||||||||||    
T  26251030 aatgttttgagggaattcaactactttgaggtgaattctattatttgaatccacctcaaaataatt 26250965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 28846029 - 28845963
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||   ||||||||||  |||||||||||||||| | |||||||||||||||||    
T  28846029 gagtgtgtttggatggggaaatgttttgagggaatataatgttttgagggaattcaactactttgag 28845963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 14982281 - 14982350
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | |||| ||||||||| |||||    
T  14982281 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatttaactactttaaggtg 14982350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 28845876 - 28845968
Alignment:
Q  458 gtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||| |||||||||||  |||| |||||||| || | |||||||||||||| |||||  |||||| |||||||| || ||||||    
T  28845876 gtgtttggatggaggaatgttttgagggaatgtaatgtttcgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaa 28845968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 36456084 - 36456015
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| |||| |||||| | |||||||||||||| |||||    
T  36456084 gagtgtgtttggatggaggaatgttttgagggaatgtaatattttgaggaaattcaactactttaaggtg 36456015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 41498648 - 41498579
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||| ||||||  |||| ||||||||||||| ||||||| || |||||||||    
T  41498648 gagtgtgtttggatggaggaatattttgagggaatgtaatgttttgaaggaattcaattattttgaggtg 41498579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 49111470 - 49111401
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||| |||||||||    
T  49111470 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactattttgaggtg 49111401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 55266933 - 55266864
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||   |||||||| |||||| | |||||||||||||| |||||    
T  55266933 gagtgtgtttggatggatgaatgttttgaggaaatataatattttgagggaattcaactactttaaggtg 55266864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 41498490 - 41498593
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatg-ttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaat 550  Q
    ||||||||||||||||  || |||||||| |||| |||||| |||||| | |||||||| ||||| |||||  |||||| |||| ||| |||||||||||    
T  41498490 gagtgtgtttggatgggggattgttttgagagaaaataatgtttttgagggaattcaaccactttaaggtgaattctattgtttaaattcacctcaaaat 41498589  T
Q  551 aatt 554  Q
    ||||    
T  41498590 aatt 41498593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 609
Target Start/End: Original strand, 42776471 - 42776527
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||| || || ||||||||||| | ||||||||||||||||||||||||    
T  42776471 ttaaaatttatataatttgcccaaaaatgacggcaatgaaattttttatttctccat 42776527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 609
Target Start/End: Original strand, 47108606 - 47108662
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||| || ||||||||| |||| |||||||||||||||| ||||||    
T  47108606 ttaaaatttataaaaattgcccaaaaattatgataatgaaattttttattactccat 47108662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 46242791 - 46242739
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  46242791 caaaaaaattaaaatttataaaagttccc--aaaatgatgacaatgaaatttttt 46242739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 857397 - 857331
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||   ||||||||||  |||| ||||||||||| | |||||||||||||||||    
T  857397 gagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaattcaactactttgag 857331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 1539649 - 1539711
Alignment:
Q  461 tttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||| |||||||||||  |||| ||||||||||| | ||||||| ||||||||||||    
T  1539649 tttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgaggtg 1539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 455 - 538
Target Start/End: Original strand, 7352814 - 7352899
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaat 538  Q
    |||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||| ||| |||||  |||||| ||||||||    
T  7352814 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgatggaattcaactattttaaggtgaattctattgtttgaat 7352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 591
Target Start/End: Original strand, 35470501 - 35470547
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatga 591  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  35470501 caaaaaaataaaaatttataaaagttgcccaaaaatgatgacaatga 35470547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 1107210 - 1107114
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    |||||| |||||||||  |||| ||||||  |||||||||||||||| | |||||||||||| | |||||  |||||| |||||||| || ||||||    
T  1107210 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcatctcaaa 1107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 1112606 - 1112675
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||   ||| |||||||| || | ||||||||||||||||||||    
T  1112606 gagtgtgtttggatgggggaatgttttgaggaaatgtaatgtttcgagggaattcaactactttgaggtg 1112675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 7352970 - 7352905
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||   ||||||||||  |||| ||||||||||| | ||||||||||||||||    
T  7352970 gagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaattcaactactttga 7352905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 16516172 - 16516237
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||||| |||| || ||||||||    
T  16516172 gagtgtgtttggatgggggaatgttttgacggaatgtaatgttttgaaggaatttaaatactttga 16516237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 21782352 - 21782408
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||| ||||||||||||||| || |||||| |||||||||||||||||||||    
T  21782352 caaaaaaatttaaatttataaaagttgcc-aaaaattatgacaatgaaattttttatt 21782408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 27284382 - 27284333
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||||  | |||||||||||||||||| |||||||||    
T  27284382 ttaaaatttataaaagttgtcgaaaaatgatgacaatgaatttttttatt 27284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 31473850 - 31473919
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  31473850 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 31473919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 54566552 - 54566609
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| || ||||||||||||||||| |||||||||||||||||| |  |||||||||    
T  54566552 caaaaaaaataaaatttataaaagttgcccaaaaatgatgacaataattttttttatt 54566609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 4896789 - 4896721
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   ||| ||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  4896789 agtgtgtttggatggggaaatattttgagggaatgtaatgttttgagggaattcaactactttgaggtg 4896721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 455 - 523
Target Start/End: Original strand, 10127976 - 10128044
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||  |||| |||||||  ||| ||||||||||||| ||||||| || |||||||||    
T  10127976 agtgtgtttggatgggggaatattttgaagtaatgtaatgttttgaaggaattcaattattttgaggtg 10128044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 17727436 - 17727480
Alignment:
Q  557 aatttataaaagttacccaaaaatgatgacaatgaaattttttat 601  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||    
T  17727436 aatttataaaatttgcccaaaaatgatgacaatgaaatattttat 17727480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 523
Target Start/End: Original strand, 10633035 - 10633102
Alignment:
Q  456 gtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  10633035 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 10633102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 589
Target Start/End: Original strand, 24705716 - 24705751
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24705716 taaaatttataaaagttgcccaaaaatgatgacaat 24705751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 13088476 - 13088430
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaatttt 597  Q
    |||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  13088476 aattaaaaattataaaagattcccaaaattgatgacaatgaaatttt 13088430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 500
Target Start/End: Complemental strand, 31742922 - 31742876
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttga 500  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||||    
T  31742922 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 31742876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 40547939 - 40547893
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatga 591  Q
    ||||| |||||||||||||||||||| || |||||||||||| ||||    
T  40547939 caaaaaaattaaaatttataaaagttgccaaaaaatgatgacgatga 40547893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 599
Target Start/End: Complemental strand, 56118328 - 56118286
Alignment:
Q  557 aatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||    
T  56118328 aatttataaaagttatccaaaattgatgacaatgaattttttt 56118286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 467959 - 467896
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||| || |||||||| |||||||    
T  467959 gagtgtgtttggatgga-gaatgttttgatggaatgtaatgttttg-aggaattcaaccactttga 467896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 4441338 - 4441395
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaac 511  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||    
T  4441338 gagtgtgtttggatggtggaatgttttgagggaatgtaatgttttgagggaattcaac 4441395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 5715745 - 5715810
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    |||||||||||||||   ||||||||||| | ||| ||||||||||| | ||||||| ||||||||    
T  5715745 gagtgtgtttggatgagggaatgttttgagataatgtaatgttttgaggtaattcaaatactttga 5715810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 11040969 - 11041037
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||| ||||||  |||| |||||||||||   ||||||||||||||||||||    
T  11040969 gagtgtgtttggatggg-gaatattttgagggaatgtaatgttttgagagaattcaactactttgaggtg 11041037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 28751906 - 28751857
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||||  ||||||||||||| |||| | |||||||||    
T  28751906 ttaaaatttataaaagttgtccaaaaatgatgaaaatggatttttttatt 28751857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 458 - 554
Target Start/End: Original strand, 34756432 - 34756530
Alignment:
Q  458 gtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    ||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  34756432 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataatt 34756530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 41822242 - 41822179
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  41822242 aaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaaattttttattactccat 41822179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 15034660 - 15034756
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | |||||||||||||| |||||  |||||| |||||||| |||||||||    
T  15034660 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaa 15034756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 44571570 - 44571634
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  44571570 caaaaaaattaaaatttacaaaagttgcccaaaaatgatggcaatgaaattttttatttctccat 44571634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 38277416 - 38277518
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    |||||||||||||||   |||| ||||||  |||| ||||||||||||| ||||||||||||||||||||  || ||| |||| ||||||||||||||||    
T  38277416 gagtgtgtttggatgagagaatattttgagggaatgtaatgttttgaaggaattcaactactttgaggtgaattatattgtttaaatccacctcaaaata 38277515  T
Q  552 att 554  Q
    |||    
T  38277516 att 38277518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 50005080 - 50005182
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    |||||||||||||||   |||| |||||| ||||| |||||||||||   ||||||||| ||||||||||  |||||| |||||||||||||||||||||    
T  50005080 gagtgtgtttggatgacggaatattttgagagaatgtaatgttttgagcgaattcaacttctttgaggtgaattctattgtttgaatccacctcaaaata 50005179  T
Q  552 att 554  Q
    |||    
T  50005180 att 50005182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 454 - 551
Target Start/End: Complemental strand, 27804423 - 27804324
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaata 551  Q
    ||||||||||||||||| |||||||||||   ||| |||||||| |||| |||||||||||||| || ||  |||||| |||||||| ||||||||||||    
T  27804423 gagtgtgtttggatggaggaatgttttgaggaaatgtaatgtttagaaggaattcaactactttaagttgaattctattgtttgaattcacctcaaaata 27804324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 15034817 - 15034748
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  15034817 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 15034748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 23536068 - 23536137
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  23536068 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 23536137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 28632296 - 28632239
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  28632296 caaaaaaattaaaatttattaaagttgcccaaaaatgatgacaatgaatttttttatt 28632239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 551 - 599
Target Start/End: Original strand, 32128468 - 32128516
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  32128468 aattaaaatttataaaagttccccaaaaatgatgacattgaaatttttt 32128516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 41577970 - 41577918
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttattt 603  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  41577970 aattaaaatttataaaagttgcccaaaaatgatgacaatgattttttttattt 41577918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 602
Target Start/End: Complemental strand, 15467650 - 15467599
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  15467650 aattaaaatttataaaagttgctcaaaaatgatgacaatgaatttttttatt 15467599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 548
Target Start/End: Original strand, 45565397 - 45565491
Alignment:
Q  456 gtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||  ||||||||||| ||||| ||||||||||| | |||||||||| ||| |||||  |||||| |||| ||| |||||||||    
T  45565397 gtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactattttaaggtgaattctattgtttaaattcacctcaaa 45565491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 32572960 - 32573025
Alignment:
Q  491 aatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||| | ||||||||||||||||||||  |||||| ||||||||||||||||||| ||||    
T  32572960 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaagaatt 32573025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 40264068 - 40264133
Alignment:
Q  491 aatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||| | ||||||||||||||||| ||  |||||| ||||||||||||||||||||||||    
T  40264068 aatgttttgagggaattcaactactttgagatgaattctattgtttgaatccacctcaaaataatt 40264133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 44571063 - 44571121
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||| ||||||||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  44571063 aattgaaatttataaaagttgcccaaaaatgatgacaataaatttttttattgctccat 44571121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 4038076 - 4038145
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||| |||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  4038076 gagtgtgtttgggtgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 4038145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 6470758 - 6470689
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||| | ||||||| | ||||||||||    
T  6470758 gagtgtgtttggatggcggaatgttttgagagaatgtaatgttttgagggaattcaaattctttgaggtg 6470689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 26501151 - 26501086
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||| ||||||||    
T  26501151 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttga 26501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 30190294 - 30190225
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||| |||||||||    
T  30190294 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaattcaactattttgaggtg 30190225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 32647672 - 32647736
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatt-ttttatttctccat 609  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||| || ||||||| ||||||    
T  32647672 aaaaaaattaaaatttataaaagttgcccaaaaataatgacaatgaatttgttttattactccat 32647736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 598
Target Start/End: Original strand, 946766 - 946813
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||    
T  946766 aattaaaatttataaaagttgtccaaaaatgatgacaatgaatttttt 946813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 545 - 588
Target Start/End: Original strand, 34003762 - 34003805
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaa 588  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  34003762 caaaaaaattaaaatttataaaaattacccaaaaatgatgacaa 34003805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 48953931 - 48953982
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||| ||||||||  ||||||||||||| ||||||||||||||||    
T  48953931 aattaaaatttctaaaagttgtccaaaaatgatgataatgaaattttttatt 48953982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 555 - 609
Target Start/End: Complemental strand, 6470389 - 6470335
Alignment:
Q  555 aaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||| |||||||||||||||| |||||| || |||| ||||||    
T  6470389 aaaatttataaaagttgcccaaaaatgatgacagtgaaatattgtattactccat 6470335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 27935643 - 27935577
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    |||||||||||||||||  ||| ||||||  |||| ||||||||||| | |||||||||||||||||    
T  27935643 gagtgtgtttggatggagaaatattttgagggaatgtaatgttttgaggaaattcaactactttgag 27935577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 554
Target Start/End: Complemental strand, 37214939 - 37214875
Alignment:
Q  491 aatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||| | ||||||||||||| ||||||  |||||| ||||||||||||||||||||||||    
T  37214939 aatgttttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataatt 37214875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 602
Target Start/End: Complemental strand, 41822887 - 41822841
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||    
T  41822887 aaatttataaaagttgcccaaaaatgatgacaataaatttttttatt 41822841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 4038233 - 4038137
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||| ||||||  |||  ||||||||||| | |||||||||||||| |||||  |||||| |||||||  |||||||||    
T  4038233 gagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaa 4038137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 24273292 - 24273223
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  24273292 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 24273223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 32288005 - 32287940
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| ||| |||||||  |||| ||||||||||| | ||||||| ||||||||    
T  32288005 gagtgtgtttggatggaggaaagttttgagggaatgtaatgttttgaggaaattcaaatactttga 32287940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 609
Target Start/End: Complemental strand, 37447584 - 37447532
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||    
T  37447584 aaatttataaaagttgcccaaaaatgatgccaat-aaattttttattactccat 37447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 609
Target Start/End: Original strand, 50472106 - 50472159
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||| ||||||    
T  50472106 aaatttataaaagttgcccaaaaataacgacaatgatattttttattactccat 50472159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 10166875 - 10166931
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| ||||||||||||||||||||  ||| ||||||||||| |||| |||||||||    
T  10166875 aaaaaaattaaaatttataaaagttctccataaatgatgacagtgaatttttttatt 10166931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 35499429 - 35499492
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||| |||||||||| | || ||||||||||||||||||| ||||||||||| ||||||    
T  35499429 caaaaaaattgaaatttataacaattgcccaaaaatgatgacaatg-aattttttattactccat 35499492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 589
Target Start/End: Original strand, 39887445 - 39887489
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||    
T  39887445 caaaaaaattaaaatttataaaagttgcccaaaaattatgacaat 39887489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 557
Target Start/End: Complemental strand, 5474526 - 5474452
Alignment:
Q  485 gaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataattaaa 557  Q
    |||| ||||||||||| | |||||||||||||| |||||  |||||| |||||||| ||| ||||| ||||||||    
T  5474526 gaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacttcaaagtaattaaa 5474452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 589
Target Start/End: Complemental strand, 37447050 - 37447008
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||| |||||||||||||||||||||||||||||| ||||||||    
T  37447050 aaaaaaattaaaatttataaaagttacccaaaaat-atgacaat 37447008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 27804269 - 27804335
Alignment:
Q  457 tgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||  |||||||||||  |||| |||| |||||| | |||||||||| |||||||||    
T  27804269 tgtgtttggatgggggaatgttttgagggaatgtaatattttgagggaattcaactattttgaggtg 27804335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 608
Target Start/End: Original strand, 32128296 - 32128340
Alignment:
Q  563 taaaagttacccaaaaatgatgacaatgaaattttttatttctcca 608  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||    
T  32128296 taaaagtt-cccaaaaatgatgacattgaaattttttattactcca 32128340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 602
Target Start/End: Complemental strand, 41481116 - 41481067
Alignment:
Q  554 taaaatttataaaagttacccaaaaa-tgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||| |  ||||| |||||||||||||||||||||||    
T  41481116 taaaatttataaaagttgctaaaaaaatgatgacaatgaaattttttatt 41481067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 43623050 - 43622981
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| |||||||||||   |||| || ||||||||||||    
T  43623050 gagtgtgtttggatgggggaatgttttgatggaatgtaatgttttgagaaaatttaaatactttgaggtg 43622981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 523
Target Start/End: Original strand, 44570687 - 44570748
Alignment:
Q  462 ttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||  |||||||||||  |||| ||||||||||||| ||||||| ||| ||||||||    
T  44570687 ttggatgggagaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtg 44570748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 47165284 - 47165215
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||||  ||||||||||   ||| ||||||||||| | ||||||| |||||| |||||    
T  47165284 gagtgtgtttggatggagaaatgttttgaggaaatgtaatgttttgagggaattcaaatactttaaggtg 47165215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 517
Target Start/End: Original strand, 51847855 - 51847916
Alignment:
Q  456 gtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||||| |||||||||||   ||| ||||||||| ||| ||||||| ||||||    
T  51847855 gtgtgtttggatggaggaatgttttgaggtaatgtaatgttttaaagaaattcaaatacttt 51847916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 48)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 1209051 - 1209102
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1209051 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 1209102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 20523291 - 20523195
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||| | |||||||||||||| |||||  |||||| |||||||| |||||||||    
T  20523291 gagtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaa 20523195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 33995614 - 33995550
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||    
T  33995614 caaaaaaattaaaatttacaaaatttacccaaaaatgatgacaatgaaattttttattactccat 33995550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 554 - 609
Target Start/End: Complemental strand, 17542045 - 17541990
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  17542045 taaaatttataaaagttgcccaaaaatgatggcaatgaaattttttatttctccat 17541990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 13391113 - 13391055
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  13391113 aattaaaatttataaaagttgcccaaaaatgatgacaatgaaattttttagtactccat 13391055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 22304905 - 22304840
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatt-ttttatttctccat 609  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  22304905 caaaaaaattaaaatttataaaagttgcccaaaaatgatggcaatgaaatttttttatttctccat 22304840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 12480285 - 12480336
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  12480285 aattaaaatttataaaagttgcccaaaaatgatgataatgaaattttttatt 12480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 40809342 - 40809408
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||   |||||||||| ||||||||||||||||| | |||||||||||||||||    
T  40809342 gagtgtgtttggatggggaaatgttttgagagaatataatgttttgagggaattcaactactttgag 40809408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 41761915 - 41761861
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  41761915 caaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaattttttt 41761861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 927680 - 927737
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  927680 caaaaaaattaaaatttataaaagttgtccaaaaatgatgacaatgaatttttttatt 927737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 15373961 - 15374030
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||| ||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  15373961 gagtgtgtttggatggaagaattttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 15374030  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 15374118 - 15374022
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||||| | |||||  |||||| |||||||| |||||||||    
T  15374118 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcacctcaaa 15374022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 2721628 - 2721560
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  2721628 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 2721560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 14835176 - 14835227
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  14835176 aattaaaatttacaaaagttgcccaaaaatgatgacaatgaaattttatatt 14835227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 28489847 - 28489905
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||||| || || |||||||||| | ||||||||||||||||||||||    
T  28489847 aattaaaatttataaaaattgcctaaaaatgatggcgatgaaattttttatttctccat 28489905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 609
Target Start/End: Original strand, 33146474 - 33146524
Alignment:
Q  559 tttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||||||||    
T  33146474 tttataaaagttgcccaaaaatgatggcaatgaaattctttatttctccat 33146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 9764496 - 9764427
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||| ||  |||| ||||||||||| | ||||||||||||||||||||    
T  9764496 gagtgtgtttggatgggggaatgtttcgagggaatgtaatgttttgagggaattcaactactttgaggtg 9764427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 608
Target Start/End: Complemental strand, 17492853 - 17492796
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctcca 608  Q
    ||||||||||||| ||||||  ||||||||||| |||||||||||||||||| |||||    
T  17492853 aattaaaatttattaaagttgtccaaaaatgataacaatgaaattttttattactcca 17492796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 22303939 - 22303870
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||||| ||||||| ||| ||||||||    
T  22303939 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtg 22303870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 22766953 - 22767022
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||||||||||||||| | ||||||| |||||| |||||    
T  22766953 gagtgtgtttggatgggggaatgttttgagggaatataatgttttgagggaattcaaatactttaaggtg 22767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 19533975 - 19533907
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||| |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  19533975 agtgtgtttggatggaggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtg 19533907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 598
Target Start/End: Original strand, 22302858 - 22302905
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||    
T  22302858 aattaaaatttataaaagttgcccaaaaatgatggtaatgaaattttt 22302905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 23092120 - 23092057
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||||||  |||||||||||| |||| ||||||||||| | | ||||||||||||    
T  23092120 gagtgtgtttggatgggggaatgttttgaacgaatgtaatgttttgagggagttcaactacttt 23092057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 2316379 - 2316476
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt-gaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||| |||| |||||| | ||||||||||||||  |||||  |||||| |||||||| |||||||||    
T  2316379 gagtgtgtttggatgggggaatgttttgagggaatgtaatattttgagggaattcaactactttaaaggtgaattctattgtttgaattcacctcaaa 2316476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 15804323 - 15804389
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||||  |||||||||||  |||| || |||||||| | |||||||||||||||||    
T  15804323 gagtgtgtttggatgggggaatgttttgagggaatgtagtgttttgagggaattcaactactttgag 15804389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 2316536 - 2316468
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||||  ||||||||||  |||| |||||||||||   ||||||||||||||||||||    
T  2316536 gagtgtgtttggatggaa-aatgttttgagggaatgtaatgttttgagagaattcaactactttgaggtg 2316468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 3563278 - 3563347
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||| |  |||||||||||  |||| ||||||||||| | |||||||||||||| |||||    
T  3563278 gagtgtgtttggataggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtg 3563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 9764339 - 9764435
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||| ||||||  |||  ||||||||||| | |||||||||||||| |||||  |||||| |||||||  |||||||||    
T  9764339 gagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaa 9764435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 20523134 - 20523203
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| |||| || ||| | ||||||||||||||||||||    
T  20523134 gagtgtgtttggatgggagaatgttttgagggaatgtaatattctgagggaattcaactactttgaggtg 20523203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 25935359 - 25935290
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  25935359 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgaggaaattcaaatactttgaggtg 25935290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 26281338 - 26281269
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  ||| |||||||  |||| ||||||||||| | |||||||||||||| |||||    
T  26281338 gagtgtgtttggatgggggaacgttttgagggaatgtaatgttttgagggaattcaactactttaaggtg 26281269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 37722963 - 37722894
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||| ||||||  |||| ||||||||||| | ||||||| ||||||||||||    
T  37722963 gagtgtgtttggatgggggaatattttgagggaatgtaatgttttgagggaattcaaatactttgaggtg 37722894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 40090483 - 40090414
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||   ||| ||||||||||| | ||||||| ||||||||||||    
T  40090483 gagtgtgtttggatgggggaatgttttgaggaaatgtaatgttttgatggaattcaaatactttgaggtg 40090414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 603
Target Start/End: Complemental strand, 6955173 - 6955125
Alignment:
Q  555 aaaatttataaaagttacccaaaaatgatgacaatgaaattttttattt 603  Q
    |||| ||||| |||||||||| |||||||| ||||||||||||||||||    
T  6955173 aaaaattatagaagttacccagaaatgatggcaatgaaattttttattt 6955125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 8255341 - 8255405
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| || ||||||| ||||||||| |  ||||||||||||||||||||||| |||| ||||||    
T  8255341 caaaaaaaataaaattgataaaagttgctaaaaaatgatgacaatgaaattttgtattactccat 8255405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 15270585 - 15270530
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||||||| |||||||    
T  15270585 aaaaaaattaaaatttacaaaagtttcccaaaa-tgatgacaatgaaatcttttatt 15270530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 589
Target Start/End: Complemental strand, 22303559 - 22303515
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  22303559 caaaaaaattgaaatttataaaagttgcccaaaaatgatgacaat 22303515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 455 - 548
Target Start/End: Original strand, 32389974 - 32390069
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||   |||||||||||| |||| |||| |||||| | |||||||||||| | |||||  ||||||  ||||||| |||||||||    
T  32389974 agtgtgtttggatgagggaatgttttgaaggaatgtaatattttgagggaattcaactactctaaggtgaattctattatttgaattcacctcaaa 32390069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 32470883 - 32470951
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggt 522  Q
    |||||| ||||||||||  ||||||||||  |||| ||||||||||||| |||||||||| ||| ||||    
T  32470883 gagtgtatttggatggagaaatgttttgagggaatgtaatgttttgaaggaattcaactattttaaggt 32470951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 9893867 - 9893802
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatg---atgacaatgaaattttttatttctcca 608  Q
    |||| ||||||||||||| |||||| ||||||||||   |||||| |||||||||||||| |||||    
T  9893867 aaaaaaattaaaatttatgaaagtttcccaaaaatgatgatgacattgaaattttttattactcca 9893802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 33245441 - 33245378
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||||||  |||||||||||  |||| |||||||||||   ||||||||||||||    
T  33245441 gagtgtgtttggatgggggaatgttttgatggaatgtaatgttttgagaaaattcaactacttt 33245378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 589
Target Start/End: Complemental strand, 37241324 - 37241289
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37241324 taaaatttataaaagttgcccaaaaatgatgacaat 37241289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 40643975 - 40643916
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaacta 513  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||    
T  40643975 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaacta 40643916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 16515009 - 16515074
Alignment:
Q  457 tgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||| |||||||||||  |||| ||| ||||||| | ||||||||| ||||||||||    
T  16515009 tgtgtttggatgga-gaatgttttgagggaatgtaaggttttgagggaattcaacttctttgaggtg 16515074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 31368238 - 31368288
Alignment:
Q  552 attaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||| |||||||||||||| |||||||  ||||||| ||||||||||||    
T  31368238 attaaagtttataaaagttactcaaaaatattgacaatcaaattttttatt 31368288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 16515176 - 16515107
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   ||||||||| |  |||| ||||||||||| | ||||||||| ||||||||||    
T  16515176 gagtgtgtttggatgagagaatgtttttagggaatgtaatgttttgagggaattcaacttctttgaggtg 16515107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 32249818 - 32249766
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||| ||||||||||||||||||||  || |||||||||||| |||||||||||    
T  32249818 aaaaaaattaaaatttataaaagttgtcc-aaaatgatgacagtgaaatttttt 32249766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 32390130 - 32390061
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||    |||| ||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  32390130 gagtgtgtttggattagagaattttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 32390061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 60)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 554
Target Start/End: Original strand, 31070425 - 31070509
Alignment:
Q  472 gaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  31070425 gaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataatt 31070509  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 24241881 - 24241817
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  24241881 caaaaaaattaaaatttataaaagttgctcaaaaatgatgccaatgaaattttttatttctccat 24241817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 55460651 - 55460709
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  55460651 aatttaaatttataaaagttgcccaaaaatgatgacaatgaaattttttattactccat 55460709  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 552 - 609
Target Start/End: Complemental strand, 6836723 - 6836666
Alignment:
Q  552 attaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  6836723 attaaaatttataaaagttgtccaaaaatgatgacaatgaaattttttattgctccat 6836666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 44692980 - 44692911
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  44692980 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 44692911  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 46707004 - 46707065
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctcc 607  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  46707004 aaaaaaattaaaatttataaaagttgtccaaaaatgatgacaatgaaattttttattactcc 46707065  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 36397680 - 36397624
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  36397680 aaaaaaattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttttatt 36397624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 28092050 - 28092101
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  28092050 aattaaaatttataaaagtttcccaaaaatgatgacattgaaattttttatt 28092101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 7976929 - 7976994
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaa-ttttttatttctccat 609  Q
    ||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  7976929 caaaaaaatcaaaatttataaaagttgcccaaaaatgatggcaatgaaatttttttatttctccat 7976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 44436259 - 44436355
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||| ||| |||||  |||||| |||||||| |||||||||    
T  44436259 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactattttaaggtgaattctattgtttgaattcacctcaaa 44436355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 46672874 - 46672805
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  46672874 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 46672805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 34396313 - 34396257
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  34396313 aaaaaaattaaaatttattaaagttccccaaaaatgatgacattgaaattttttatt 34396257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 35279639 - 35279583
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  35279639 aaaaaaattaaaatttataaaagttgtccaaaaatgatgacaatgaatttttttatt 35279583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 43863654 - 43863598
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||| |||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  43863654 aaaaaaattaaaatttataaaagttgcccaaaaatgatgacaataaatttttttatt 43863598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 598
Target Start/End: Complemental strand, 53470115 - 53470068
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  53470115 aattaaaatttataaaagttgcccaaaaatgatgacaatgaatttttt 53470068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 46429434 - 46429499
Alignment:
Q  491 aatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||||||| | |||||||||||||| |||||  |||||| ||||||||||||||||||||||||    
T  46429434 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaatccacctcaaaataatt 46429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 671358 - 671301
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| || |||||||||||||||||  |||||||||||||||||||| |||||||||    
T  671358 caaaaaaaataaaatttataaaagttgtccaaaaatgatgacaatgaatttttttatt 671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 9129502 - 9129433
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  9129502 gagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 9129433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 9137609 - 9137540
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  9137609 gagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 9137540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 27252052 - 27251983
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  | |||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  27252052 gagtgtgtttggatggggggatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 27251983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 560 - 609
Target Start/End: Complemental strand, 31189074 - 31189025
Alignment:
Q  560 ttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  31189074 ttataaaagttgtccagaaatgatgacaatgaaattttttatttctccat 31189025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 38506654 - 38506601
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttt 598  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||||||    
T  38506654 caaaaaaattaaaatttataaaagttgcccaaaaatgatgataaagaaattttt 38506601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 44692823 - 44692919
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||  ||||||||||| | |||||||| ||||| |||||  |||||| |||||||| |||||||||    
T  44692823 gagtgtgtttggatgggggaatgttttgagggaaagtaatgttttgagggaattcaaccactttaaggtgaattctattgtttgaattcacctcaaa 44692919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 47767433 - 47767502
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||||| ||||||| ||| ||||||||    
T  47767433 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtg 47767502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 7302773 - 7302836
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||| |||| ||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||    
T  7302773 aaaaaaattgaaatttataaaagttgcccaaaagtgatgacaataaatttttttattactccat 7302836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 589
Target Start/End: Complemental strand, 13176343 - 13176305
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  13176343 aattaaaatttataaaagttacccaaaaattatgacaat 13176305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 589
Target Start/End: Complemental strand, 13339243 - 13339205
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  13339243 aattaaaatttataaaagttacccaaaaattatgacaat 13339205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 37054774 - 37054827
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  37054774 caaaaaaattgaaatttataaaagttgcccaaaaatgatgacaat-aaatttttt 37054827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 42005644 - 42005591
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  42005644 caaaaaaattgaaatttataaaagttgcccaaaaatgatgacaat-aaatttttt 42005591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 48947959 - 48948013
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    ||||| |||||||||||||||||||| || ||||||||||||| |||| ||||||    
T  48947959 caaaaaaattaaaatttataaaagttgcctaaaaatgatgacagtgaattttttt 48948013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 7302347 - 7302416
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   ||||||||||| ||||| ||||||||||||| ||||||  ||| ||||||||    
T  7302347 gagtgtgtttggatgagggaatgttttgagagaatgtaatgttttgaaggaattcagataccttgaggtg 7302416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 9129345 - 9129441
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  || | ||||||  |||| ||||||||||| | |||||||||||||| || ||  |||||| |||||||| |||||||||    
T  9129345 gagtgtgtttggatgggagactattttgagggaatgtaatgttttgatggaattcaactactttaagttgaattctattgtttgaattcacctcaaa 9129441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 9137452 - 9137548
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  || | ||||||  |||| ||||||||||| | |||||||||||||| || ||  |||||| |||||||| |||||||||    
T  9137452 gagtgtgtttggatgggagactattttgagggaatgtaatgttttgatggaattcaactactttaagttgaattctattgtttgaattcacctcaaa 9137548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 21731298 - 21731355
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| ||||||||||||||||||||   ||||||||||||||||||| ||| |||||    
T  21731298 caaaaaaattaaaatttataaaagttgttcaaaaatgatgacaatgaattttattatt 21731355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 609
Target Start/End: Complemental strand, 34936607 - 34936550
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaa-tgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||    
T  34936607 ttaaaatttataaaagttgccaaaaaaatgatgacaaagaaattttttattactccat 34936550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 37054395 - 37054464
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  ||||||||| |  |||| ||||||||||||| ||||||| ||| ||||||||    
T  37054395 gagtgtgtttggatgggggaatgttttaagggaatgtaatgttttgaaggaattcaaataccttgaggtg 37054464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 42006024 - 42005955
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||||| |||| || ||| ||||||||    
T  42006024 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatttaaataccttgaggtg 42005955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 49457344 - 49457413
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||| ||||| |||||    
T  49457344 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaaccactttaaggtg 49457413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 53129595 - 53129543
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  53129595 aaaaaaattaaaatttataaa-gttgcccaaaaatgatgacaatgaattttttt 53129543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 589
Target Start/End: Original strand, 31022051 - 31022095
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||    
T  31022051 caaaaaaattaaaatttataaaagttgcccaaaaattatgacaat 31022095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 594
Target Start/End: Original strand, 46636203 - 46636251
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaat 594  Q
    |||| ||||||||||||||||||||  |||||||| |||||||||||||    
T  46636203 aaaaaaattaaaatttataaaagttgtccaaaaattatgacaatgaaat 46636251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 608
Target Start/End: Complemental strand, 44288194 - 44288131
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctcca 608  Q
    ||||| ||||||||||||||||||||   ||||||| || ||||| || |||||||||||||||    
T  44288194 caaaaaaattaaaatttataaaagttgttcaaaaattataacaataaatttttttatttctcca 44288131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 47337502 - 47337553
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||||||  ||||||| ||||||||| ||| ||||||||    
T  47337502 aattaaaatttataaaagttttccaaaaacgatgacaataaaactttttatt 47337553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 19475824 - 19475886
Alignment:
Q  461 tttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||| |||||||||||  |||| ||||||| ||| | ||||||| ||||||||||||    
T  19475824 tttggatggaggaatgttttgagggaatgtaatgttatgaggtaattcaaatactttgaggtg 19475886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 523
Target Start/End: Complemental strand, 21307600 - 21307534
Alignment:
Q  457 tgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||  ||||||||||   |||| ||||||||||| | ||||||| ||||||||||||    
T  21307600 tgtgtttggatgggggaatgttttgcgggaatgtaatgttttgagggaattcaaatactttgaggtg 21307534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 591
Target Start/End: Original strand, 34088959 - 34088997
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatga 591  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  34088959 ttaatatttataaaagttgcccaaaaatgatgacaatga 34088997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 39110395 - 39110461
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgag 520  Q
    ||||||||||||||| |  ||||||||||  |||| ||||||||||  | |||||||||||||||||    
T  39110395 gagtgtgtttggatgaagaaatgttttgagcgaatgtaatgttttgtgggaattcaactactttgag 39110461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 44288525 - 44288467
Alignment:
Q  459 tgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    |||||||||||| |||||||||||   ||||||||||||||| | ||||||| ||||||    
T  44288525 tgtttggatggaggaatgttttgaggtaatataatgttttgatggaattcaaatacttt 44288467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 47284268 - 47284329
Alignment:
Q  495 ttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    |||||| | |||||| |||||||||||||  |||||| ||||||||| ||||||||||||||    
T  47284268 ttttgagggaattcagctactttgaggtgaattctattgtttgaatcaacctcaaaataatt 47284329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 456 - 522
Target Start/End: Original strand, 52527039 - 52527105
Alignment:
Q  456 gtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggt 522  Q
    ||||||||||||||  |||||||||||| | || ||||||| || || ||||||| |||||||||||    
T  52527039 gtgtgtttggatgggggaatgttttgaagggatgtaatgttatggaggaattcaaatactttgaggt 52527105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 609
Target Start/End: Original strand, 2732951 - 2733000
Alignment:
Q  560 ttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||| |||  |||||||||||||||||||| ||||||||| ||||||    
T  2732951 ttataaatgttgtccaaaaatgatgacaatgaatttttttattactccat 2733000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 5415784 - 5415853
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||| |  |||| ||||||  |||| ||||||||||| | |||||||||||||| |||||    
T  5415784 gagtgtgtttggataggggaatattttgagggaatgtaatgttttgagggaattcaactactttaaggtg 5415853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 5415941 - 5415872
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||| ||||||  |||  ||||||||||| | |||||||||||||| |||||    
T  5415941 gagtgtgtttggatgggggaatattttgagggaaagtaatgttttgatggaattcaactactttaaggtg 5415872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 34088572 - 34088641
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||||  ||||||||||  |||| || |||||||| | ||||||| ||||||| ||||    
T  34088572 gagtgtgtttggatggagaaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtg 34088641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 36398060 - 36397991
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||  |||||||||||  |||| || |||||||| | ||||||| ||||||| ||||    
T  36398060 gagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtg 36397991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 39215889 - 39215941
Alignment:
Q  504 aattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataatt 554  Q
    ||||||| ||||||||||||  || ||| ||||||||||||||||||||||||    
T  39215889 aattcaattactttgaggtgaattttattgtttgaatccacctcaaaataatt 39215941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 609
Target Start/End: Original strand, 47767816 - 47767869
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||||||||| ||||||||||||||| || |  ||||||||| ||||||    
T  47767816 aaatttataaaagttgcccaaaaatgatgacgataattttttttattactccat 47767869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 48947606 - 48947675
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| || ||||||||   ||||||| ||||||| ||||    
T  48947606 gagtgtgtttggatggaagaatgttttgagggaatgtattgttttgagagaattcaaatactttggggtg 48947675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 595
Target Start/End: Complemental strand, 50168356 - 50168307
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaatt 595  Q
    ||||| |||||||| |||||||||| |  |||||||||||||||||||||    
T  50168356 aaaattattaaaatgtataaaagttgctaaaaaatgatgacaatgaaatt 50168307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 609
Target Start/End: Original strand, 52527416 - 52527453
Alignment:
Q  572 cccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  52527416 cccaaaaataatgacaatgaaattttttattactccat 52527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 19477 - 19413
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  19477 caaaaaaattaaaatttataaaagctgcccaaaaatgatgacaatgaaattttttattactccat 19413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 554
Target Start/End: Original strand, 9763014 - 9763115
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaaataa 552  Q
    |||||||||||| ||   ||||||||||  |||| ||||||||||| | ||||||||||||||||||||  |||||| |||||||||||||||| |||||    
T  9763014 agtgtgtttggaaggggaaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcacaataa 9763113  T
Q  553 tt 554  Q
    ||    
T  9763114 tt 9763115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 548
Target Start/End: Original strand, 9285648 - 9285744
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||| ||  |||||| |||||||| || ||||||    
T  9285648 gagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgagctgaattctattgtttgaattcatctcaaa 9285744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 455 - 523
Target Start/End: Original strand, 6919710 - 6919778
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||| ||||| |||||  |||| ||||||||||| | ||||||||||||||||||||    
T  6919710 agtgtgtttggatggaggaatggtttgagggaatgtaatgttttgagggaattcaactactttgaggtg 6919778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 523
Target Start/End: Complemental strand, 15299579 - 15299514
Alignment:
Q  457 tgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||  |||||||||||  |||| ||||||||||||| ||||||||||||||||||||    
T  15299579 tgtgtttggatggg-gaatgttttgagggaatgtaatgttttgaaggaattcaactactttgaggtg 15299514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 8475508 - 8475565
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| |||||||||||||||||| |  |||||||||||||||||||| |||||||||    
T  8475508 caaaaaaattaaaatttataaaagctgtccaaaaatgatgacaatgaatttttttatt 8475565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 28918166 - 28918235
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||| | | ||||||| ||||||||||||    
T  28918166 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttgaggtg 28918235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 29889506 - 29889441
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||| ||||||||    
T  29889506 gagtgtgtttggatggaggaatgttttgatggaatgtaatgttttgagggaattcaaatactttga 29889441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 34245052 - 34244987
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||| ||||||||    
T  34245052 gagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttga 34244987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 599
Target Start/End: Original strand, 1368859 - 1368907
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaatttttt 599  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  1368859 aattaaaacttataaaagttgcccaaaaatgatgacaatgaattttttt 1368907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 602
Target Start/End: Original strand, 31413248 - 31413296
Alignment:
Q  554 taaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||||    
T  31413248 taaaatttataaaagttgcccaaaaatgatgacaataaatttttttatt 31413296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 28918537 - 28918600
Alignment:
Q  546 aaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||| |||||||| |||||||||||  ||||||||||||||||| || ||||||||| ||||||    
T  28918537 aaaaaaattaaaacttataaaagttgtccaaaaatgatgacaataaatttttttattactccat 28918600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 517
Target Start/End: Original strand, 776081 - 776144
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    |||||||||| ||||||  ||||||||||  |||| ||||||||||| | ||||||||||||||    
T  776081 gagtgtgtttagatggagaaatgttttgagggaatgtaatgttttgaggaaattcaactacttt 776144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 538
Target Start/End: Complemental strand, 776238 - 776152
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaat 538  Q
    |||||||||||||| |   ||||||||||  |||| ||||||||||| | |||||||||||||| |||||  |||||| ||||||||    
T  776238 gagtgtgtttggataggaaaatgttttgagggaatgtaatgttttgaggaaattcaactactttaaggtgaattctattgtttgaat 776152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 517
Target Start/End: Original strand, 8574696 - 8574759
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||||||   ||||||||||  |||| ||||||||||| | ||||||||||||||    
T  8574696 gagtgtgtttggatggggaaatgttttgagtgaatgtaatgttttgagggaattcaactacttt 8574759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 8574823 - 8574760
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactacttt 517  Q
    ||||||||||||||||   ||||||||||  |||| ||||||||||| | ||||||||||||||    
T  8574823 gagtgtgtttggatggggaaatgttttgagtgaatgtaatgttttgagggaattcaactacttt 8574760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 602
Target Start/End: Original strand, 10105396 - 10105442
Alignment:
Q  556 aaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| || | ||||||||||||||||||||| ||||    
T  10105396 aaatttataaaagttgccaagaaatgatgacaatgaaattttgtatt 10105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 589
Target Start/End: Original strand, 15832992 - 15833030
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  15832992 aattaaaatttataaaagttgcccaaaaattatgacaat 15833030  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 1368478 - 1368547
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||||| ||||||||||| ||||| |||| |||| | | ||||||| |  |||||||||    
T  1368478 gagtgtgtttggatggaggaatgttttgagagaatgtaatattttaagggaattcaaatgttttgaggtg 1368547  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 6919865 - 6919770
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg--ttctatcgtttgaatccacctcaaa 548  Q
    ||||||||||||||||  |||||||||||  |||  ||||||||||| | |||||||| | ||| |||||  |||||| |||||||| |||||||||    
T  6919865 gagtgtgtttggatgggggaatgttttgagggaaagtaatgttttgagggaattcaacca-tttaaggtgaattctattgtttgaattcacctcaaa 6919770  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 523
Target Start/End: Original strand, 15299412 - 15299469
Alignment:
Q  466 atggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||| |||||||||||  |||| |||||||||||   ||||||||||||||||||||    
T  15299412 atggaggaatgttttgagcgaatgtaatgttttgagagaattcaactactttgaggtg 15299469  T

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Target: scaffold0400 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 4184 - 4126
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  4184 aattaaaatttataaaagttgcccaaaaatgatgacaataaatttttttattactccat 4126  T

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Target: scaffold0400; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 4570 - 4501
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||||||||||  |||||||||||||||| | ||||||| || |||| ||||    
T  4570 gagtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtg 4501  T

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Target: scaffold0365 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 4828 - 4770
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  4828 aattaaaatttataaaagttgcccaaaaatgatgacaataaatttttttattactccat 4770  T

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Target: scaffold0365; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 5214 - 5145
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||   |||||||||||  |||||||||||||||| | ||||||| || |||| ||||    
T  5214 gagtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtg 5145  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 41998 - 42067
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||| ||||| |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  41998 gagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 42067  T

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Target: scaffold1562 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 562 - 494
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  562 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 494  T

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Target: scaffold1562; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 516
Target Start/End: Original strand, 406 - 468
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactt 516  Q
    ||||||||||||||||  |||| ||||||  ||| |||||||||||| | |||||||||||||    
T  406 gagtgtgtttggatgggggaatattttgagggaaaataatgttttgagggaattcaactactt 468  T

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Target: scaffold1158 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 455 - 523
Target Start/End: Original strand, 2031 - 2099
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||  |||||||||||  |||| ||||||||||| | ||||||||||||||||||||    
T  2031 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtg 2099  T

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Target: scaffold1158; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 516
Target Start/End: Complemental strand, 2187 - 2125
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactt 516  Q
    ||||||||||||||||  |||| ||||||  ||| |||||||||||| | |||||||||||||    
T  2187 gagtgtgtttggatgggggaatattttgagggaaaataatgttttgagggaattcaactactt 2125  T

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Target: scaffold0318 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 553 - 602
Target Start/End: Original strand, 3244 - 3293
Alignment:
Q  553 ttaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  3244 ttaaaatttataaaaggttcccaaaaatgatgataatgaaattttttatt 3293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 7531 - 7588
Alignment:
Q  545 caaaataattaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  7531 caaaaaaaataaaatttataaaagttgcccaaaaatgatgacaatgaatatttttatt 7588  T

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Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 4076 - 4145
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    ||||||||||||||  | ||||||||||| ||||| ||||||||||| | ||||||| ||||||||||||    
T  4076 gagtgtgtttggataaaggaatgttttgagagaatgtaatgttttgagggaattcaaatactttgaggtg 4145  T

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Target: scaffold0169; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 4414 - 4462
Alignment:
Q  561 tataaaagttacccaaaaatgatgacaatgaaattttttatttctccat 609  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  4414 tataaaagttgcccaaaaatgatgacaatgaaatttttgattactccat 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 523
Target Start/End: Original strand, 82945 - 83013
Alignment:
Q  455 agtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttgaggtg 523  Q
    |||||||||||||||  |||||||||||  |||| ||||||||||| | |||||||||||||| |||||    
T  82945 agtgtgtttggatgggtgaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtg 83013  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 223468 - 223419
Alignment:
Q  552 attaaaatttataaaagttacccaaaaatgatgacaatgaaattttttatt 602  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  223468 attaaaatttataaa-gttgcccaaaaatgatgacaatgaatttttttatt 223419  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 589
Target Start/End: Original strand, 130645 - 130683
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  130645 aattaaaatttataaaagttacccaaaaattatgacaat 130683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 589
Target Start/End: Complemental strand, 50000 - 49962
Alignment:
Q  551 aattaaaatttataaaagttacccaaaaatgatgacaat 589  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  50000 aattaaaatttataaaagttgcccaaaaattatgacaat 49962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 10887 - 10952
Alignment:
Q  454 gagtgtgtttggatggacgaatgttttgaaagaatataatgttttgaagcaattcaactactttga 519  Q
    ||||||||||| ||||| ||||||||| |  |||| ||||||||||| | ||||||| ||||||||    
T  10887 gagtgtgtttgaatggaagaatgttttaagggaatgtaatgttttgagggaattcaaatactttga 10952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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