View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5626_high_11 (Length: 266)

Name: NF5626_high_11
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5626_high_11
NF5626_high_11
[»] chr8 (5 HSPs)
chr8 (153-256)||(38310319-38310422)
chr8 (1-90)||(38310164-38310256)
chr8 (200-240)||(38301721-38301761)
chr8 (31-75)||(38307431-38307475)
chr8 (31-72)||(38314818-38314859)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 38310319 - 38310422
Alignment:
Q  153 ctaatgttcaatgttggatgaaactagtatgtaaatctacttgaatgggaacatatttcaggtattgttcttgcaccttatttcacttggtttctctctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310319 ctaatgttcaatgttggatgaaactagtatgtaaatctacttgaatgggaacatatttcaggtattgttcttgcaccttatttcacttggtttctctctc 38310418  T
Q  253 tctg 256  Q
    ||||    
T  38310419 tctg 38310422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38310164 - 38310256
Alignment:
Q  1 ttttgtgatgtttgttttg---ttatggtttgcaaaattaaaactatatatggttgttaggctatgttttttggacttactggcggacttaga 90  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310164 ttttgtgatgtttgttttggctttatggtttgcaaaattaaaactatatatggttgttaggctatgttttttggacttactggcggacttaga 38310256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 38301721 - 38301761
Alignment:
Q  200 ggaacatatttcaggtattgttcttgcaccttatttcactt 240  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  38301721 ggaacaaatttcgggtattgttcttgcaccttatttcactt 38301761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 38307431 - 38307475
Alignment:
Q  31 aaaattaaaactatatatggttgttaggctatgttttttggactt 75  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||    
T  38307431 aaaattaaaactatatacggttgttaggttatgttttttagactt 38307475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 38314818 - 38314859
Alignment:
Q  31 aaaattaaaactatatatggttgttaggctatgttttttgga 72  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  38314818 aaaattaagactatatatggttgttaggttatgttttctgga 38314859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University