View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_high_3 (Length: 508)
Name: NF5626_high_3
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_high_3 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 119 - 502
Target Start/End: Original strand, 6307913 - 6308297
Alignment:
| Q |
119 |
tatagagaagtaataaggtacacttgaacatggagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataa |
218 |
Q |
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| T |
6307913 |
tatagagaaataataaggtacacttgaacatggagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataa |
6308012 |
T |
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| Q |
219 |
tttcttgggtaacctcttctctgaaaacctcaacaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttac |
318 |
Q |
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| T |
6308013 |
tttcttgggtaacctcttctctgaaaacctcaacaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttac |
6308112 |
T |
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| Q |
319 |
cctttgatttccattagaggccaggctgactgtattatcaactaaatcacaagaaaccattaccgtttatgcatacctcactcttatttcctttcactct |
418 |
Q |
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| T |
6308113 |
cctttgatttccattagaggccaggctgactttattatcaa-taaatcacaaaaaaccattaccggttatgcatacctcactcttatttcctttcactct |
6308211 |
T |
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| Q |
419 |
aat--acctcatcttttaatatgatttaagtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatc |
502 |
Q |
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| T |
6308212 |
aatacacctcctcttttaatatgatttaagtcccttaaattcaattgattgccttgattccatactatgacttgaatagaaaaatc |
6308297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6307831 - 6307913
Alignment:
| Q |
1 |
ttatttttatttggccatcacttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgattatat |
83 |
Q |
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| T |
6307831 |
ttatttttatctggccatcacttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgattatat |
6307913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 361 - 502
Target Start/End: Original strand, 107388 - 107529
Alignment:
| Q |
361 |
taaatcacaagaaaccattaccgtttatgcatacctcactcttatttcctttcactctaatacctcatcttttaatatga-tttaagtcccttaaattca |
459 |
Q |
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| T |
107388 |
taaatcacaagaagccattagcggttgtgcatacctcacttttatttcttttcactctaatacctca-ctcttaatatgattttaagtcccttaaaatca |
107486 |
T |
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| Q |
460 |
attgaccgccttgattccatactatgacttgaatagaataatc |
502 |
Q |
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| T |
107487 |
attgattgccttgattccatactataacttgaatagaaaaatc |
107529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 392 - 502
Target Start/End: Original strand, 29451237 - 29451348
Alignment:
| Q |
392 |
tacctcactcttatttcctttcactctaatacctcatcttttaatatga-tttaagtcccttaaattcaattgaccgccttgattccatactatgacttg |
490 |
Q |
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|||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||||||||||||| | |
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| T |
29451237 |
taccccacttttattccctttcactctaatacctcatcttttaatatgattttaagtcccttaaaatcaattggttgccttaactccatactatgactgg |
29451336 |
T |
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| Q |
491 |
aatagaataatc |
502 |
Q |
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| T |
29451337 |
aatagaagaatc |
29451348 |
T |
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