View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_high_6 (Length: 420)
Name: NF5626_high_6
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 32493184 - 32493573
Alignment:
| Q |
13 |
aatatcatcatctcttcaacattttcattctccttaacaacaatactcttattacttttttcatatattttcttgtgtgacaagttaaagaaaataatta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32493184 |
aatatcatcatctcttcaacattttcattctccttaacaacaatactcttattacttttttcatatattttcttgtgtgacaagttaaagaaaataatta |
32493283 |
T |
|
| Q |
113 |
ttcaactcataaaataattaatattccagtatgcattctatggcttttagaattatgattagttttgttgtcacattggtgctgctaagctcaatatgtg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32493284 |
ttcaactcataaaataattaatattccagtatgcattctatggcttttagaattatgattagttttgttgtcacattggtgctgctaagctcaatatgtg |
32493383 |
T |
|
| Q |
213 |
atgcacaattgtcttctacgttttacgatagtacatgccctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaggagcgtcgtat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32493384 |
atgcacaattgtcttctacgttttacgatagtacatgccctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaagagcgtcgtat |
32493483 |
T |
|
| Q |
313 |
ggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagttcatgattgattaaccatatcaagtattcattatg |
402 |
Q |
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| T |
32493484 |
ggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagttcatgattgattaaccatataaagtattcattatg |
32493573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 129 - 367
Target Start/End: Original strand, 28595078 - 28595316
Alignment:
| Q |
129 |
attaatattccagtatgcattctatggcttttagaattatgattagttttgttgtcacattggtgctgctaagctcaatatgtgatgcacaattgtcttc |
228 |
Q |
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| T |
28595078 |
attaacattccagtttgcattcgatggcttttagaattacgactagttttattgtcacattggtgctactaagttcaatatgtgatgcacaattgtcttc |
28595177 |
T |
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| Q |
229 |
tacgttttacgatagtacatgccctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaggagcgtcgtatggctgcatctctcatt |
328 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28595178 |
tacgttttacgatggtacatgccctaatgcattaagcactatcagaactgccattcgtactgctgtctctaaggagcgtcgtatggctgcatctctcatt |
28595277 |
T |
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| Q |
329 |
cgtcttcattttcatgattgttttgtccaggtaattagt |
367 |
Q |
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| T |
28595278 |
cgtcttcattttcatgattgttttgtccaggtaattagt |
28595316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 28587712 - 28587496
Alignment:
| Q |
152 |
atggcttttagaattatgattagttttgttgtcacattggtgctgctaagctcaatat---gtgatgcacaattgtcttctacgttttacgatagtacat |
248 |
Q |
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| T |
28587712 |
atggcttatagaatgatcactagttttgttgtaacattggtgctgctaggcacaatatcatgtgatgcccaattatcttctacattttatgacagtactt |
28587613 |
T |
|
| Q |
249 |
gccctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattg |
348 |
Q |
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||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28587612 |
gccctaatgcactaagcaccatcagaacttcgattcgtactgcaatctctaaggagcgtcgtatggctgcatctctcattcgtcttcactttcatgattg |
28587513 |
T |
|
| Q |
349 |
ttttgtccaggtaatta |
365 |
Q |
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|||||| |||||||||| |
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| T |
28587512 |
ttttgtgcaggtaatta |
28587496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 28592883 - 28592670
Alignment:
| Q |
152 |
atggcttttagaattatgattagttttgttgtcacattggtgctgctaagctcaatatgtgatgcacaattgtcttctacgttttacgatagtacatgcc |
251 |
Q |
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||||||| |||||| || | |||||||||| |||||||| | | ||| || ||||||||||||| || | |||||||| || ||||| |||||||||| |
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| T |
28592883 |
atggcttatagaatgatcactagttttgttttcacattgattgttctaggcacaatatgtgatgcgcagctttcttctactttctacgacagtacatgcc |
28592784 |
T |
|
| Q |
252 |
ctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattgttt |
351 |
Q |
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||||||| |||||||||| |||||| ||||||||| ||||||||||||||| |||| ||||| |||||| ||||||| |||||||||||||| ||||| |
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| T |
28592783 |
ctaatgccttaagcactattagaacttcgattcgtactgctgtctctaaggagtgtcgcatggcggcatctgtcattcgccttcattttcatgactgttt |
28592684 |
T |
|
| Q |
352 |
tgtccaggtaatta |
365 |
Q |
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|||||| ||||||| |
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| T |
28592683 |
tgtccaagtaatta |
28592670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 28587782 - 28587728
Alignment:
| Q |
13 |
aatatcatcatctcttcaac-attttcattctccttaacaacaatactcttattac |
67 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
28587782 |
aatatcatcatctcttcaaccattttcattctc-ttaacaacaatactcttattac |
28587728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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