View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5626_high_9 (Length: 299)

Name: NF5626_high_9
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5626_high_9
NF5626_high_9
[»] chr7 (6 HSPs)
chr7 (1-280)||(30409645-30409914)
chr7 (125-271)||(30395872-30396020)
chr7 (12-57)||(30396080-30396125)
chr7 (124-169)||(40728794-40728839)
chr7 (123-155)||(45823306-45823338)
chr7 (123-167)||(46285291-46285335)
[»] chr3 (5 HSPs)
chr3 (123-169)||(21023178-21023224)
chr3 (123-162)||(4486905-4486944)
chr3 (124-166)||(42913204-42913246)
chr3 (77-111)||(48895083-48895117)
chr3 (128-169)||(51285710-51285751)
[»] chr5 (2 HSPs)
chr5 (124-169)||(3747549-3747594)
chr5 (126-166)||(9449138-9449178)
[»] chr4 (10 HSPs)
chr4 (124-169)||(3652741-3652786)
chr4 (81-169)||(22980678-22980767)
chr4 (124-168)||(33843847-33843891)
chr4 (123-169)||(5025607-5025653)
chr4 (123-169)||(5835828-5835874)
chr4 (123-169)||(54683467-54683513)
chr4 (123-168)||(17897799-17897844)
chr4 (81-169)||(22699763-22699852)
chr4 (124-169)||(24364082-24364127)
chr4 (123-155)||(39000523-39000555)
[»] chr1 (3 HSPs)
chr1 (123-168)||(22548190-22548235)
chr1 (124-169)||(5167381-5167426)
chr1 (124-168)||(213172-213216)
[»] chr2 (3 HSPs)
chr2 (124-168)||(37745789-37745833)
chr2 (124-168)||(3476334-3476378)
chr2 (124-168)||(11650662-11650706)
[»] chr8 (4 HSPs)
chr8 (123-158)||(18355750-18355785)
chr8 (125-168)||(43024963-43025006)
chr8 (123-169)||(8130065-8130111)
chr8 (123-169)||(24297553-24297599)
[»] chr6 (1 HSPs)
chr6 (123-156)||(19601369-19601402)
[»] scaffold0314 (1 HSPs)
scaffold0314 (124-160)||(17526-17562)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 30409914 - 30409645
Alignment:
Q  1 caagtctcgtattttttaaaagtagctaacacacacaatcaaaagcttgatccaaacaagtcacnnnnnnnnagtgaatatatccaaatacaaaccattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  30409914 caagtctcgtattttttaaaagtagctaacacacacaatcaaaagcttgatccaaacaagtcacttttttttagtgaatatatccaaatacaaaccattt 30409815  T
Q  101 tatattcaactacttctaacataaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacacgatttgtgaagaatagggagtacgcttttgt 200  Q
    |||||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  30409814 tatattcaactacttctaacataaatcaattcaat----------ttttgtcaccacaaaaccaaacacaatttgtgaagaatagggagtacacttttgt 30409725  T
Q  201 gactgtgtcagttaaaagttttagacgtagttgataggtggtaagctttataggcatagtttttgaacaatggacctagc 280  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30409724 gactgtgtcagttaagtgttttagacgtagttgataggtggtaagctttataggcatagtttttgaacaatagacctagc 30409645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 271
Target Start/End: Complemental strand, 30396020 - 30395872
Alignment:
Q  125 atcaattcaatcaaaatcaatttttatcaccacaaaaccaaacacgatttgtgaagaatagggagtacgcttttgtgac--tgtgtcagttaaaagtttt 222  Q
    |||||||||||||||||||||||| || | |||| ||| |||||| ||||||||||||||||||| |  ||||||||||  | ||| | ||||  |||||    
T  30396020 atcaattcaatcaaaatcaattttcataagcacataacgaaacacaatttgtgaagaatagggagcaaacttttgtgactttttgtaatttaagcgtttt 30395921  T
Q  223 agacgtagttgataggtggtaagctttataggcatagtttttgaacaat 271  Q
     ||||||| |||||     |||| ||||||||||||||| |||||||||    
T  30395920 tgacgtagatgataaccattaagatttataggcatagttattgaacaat 30395872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 30396125 - 30396080
Alignment:
Q  12 ttttttaaaagtagctaacacacacaatcaaaagcttgatccaaac 57  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||    
T  30396125 ttttttaaaagtagcatacacacacaatcaaaagcttgacccaaac 30396080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 40728794 - 40728839
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    ||||||||||||||||| |||||||| || |||||||| |||||||    
T  40728794 aatcaattcaatcaaaagcaatttttgtccccacaaaatcaaacac 40728839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 45823306 - 45823338
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcacc 155  Q
    ||||||||||||||||||||||||||| |||||    
T  45823306 aaatcaattcaatcaaaatcaatttttgtcacc 45823338  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 46285335 - 46285291
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaac 167  Q
    |||||||||  |||||||||||||||||||||| || ||||||||    
T  46285335 aaatcaattatatcaaaatcaatttttatcaccgcataaccaaac 46285291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 21023224 - 21023178
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  21023224 aaatcaattctatcaaaatcaattattatcaccacacaaccaaacac 21023178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 4486905 - 4486944
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaac 162  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  4486905 aaatcaatttaatcaaaatcaattcttatcaccacaaaac 4486944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 42913204 - 42913246
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaa 166  Q
    |||||||||| |||||||||||||||||||||| | |||||||    
T  42913204 aatcaattcactcaaaatcaatttttatcaccaaacaaccaaa 42913246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 48895083 - 48895117
Alignment:
Q  77 aatatatccaaatacaaaccattttatattcaact 111  Q
    |||||||||||||||||||||||||||||| ||||    
T  48895083 aatatatccaaatacaaaccattttatatttaact 48895117  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 51285710 - 51285751
Alignment:
Q  128 aattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  51285710 aattcactcaaaatcaatttttctcaccgcaaaaccaaacac 51285751  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 3747594 - 3747549
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||    
T  3747594 aatcaattctatcaaaatcaatttttatcaccgcataaccaaacac 3747549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 9449178 - 9449138
Alignment:
Q  126 tcaattcaatcaaaatcaatttttatcaccacaaaaccaaa 166  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  9449178 tcaattgattcaaaatcaatttttatcaccacataaccaaa 9449138  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3652741 - 3652786
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||    
T  3652741 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacac 3652786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 22980767 - 22980678
Alignment:
Q  81 tatccaaatacaaaccattttatattcaact-acttctaacataaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||| | ||| || |||| |||||||| |||| ||||  |||||||||| | |||||||||||||| |||||||| ||||||||||    
T  22980767 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccacacaaccaaacac 22980678  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 33843847 - 33843891
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||    
T  33843847 aatcaattcaatcaaaatcaatttttgtcaacacaaagccaaaca 33843891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5025607 - 5025653
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    ||||||||||||||||||||||||||  ||||| || ||||||||||    
T  5025607 aaatcaattcaatcaaaatcaattttagtcaccgcataaccaaacac 5025653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5835828 - 5835874
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    ||||||||||||||||||||||||||  |||| ||| ||||||||||    
T  5835828 aaatcaattcaatcaaaatcaattttcgtcacaacataaccaaacac 5835874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 54683467 - 54683513
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||||| |||||||||||||||| ||||| || ||||||||||    
T  54683467 aaatcaattctatcaaaatcaatttttttcaccgcagaaccaaacac 54683513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 17897844 - 17897799
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    ||||||||||| ||||||||||||||| ||||| || |||||||||    
T  17897844 aaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 22699763 - 22699852
Alignment:
Q  81 tatccaaatacaaaccattttatattcaact-acttctaacataaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||| | ||| || |||| |||||||| |||| ||||  |||||||||| | |||||||||||||| ||||| || ||||||||||    
T  22699763 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccgcacaaccaaacac 22699852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 24364127 - 24364082
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||||| ||||||||||||||| ||| || ||||||||||||    
T  24364127 aatcaattcattcaaaatcaatttttgtcatcataaaaccaaacac 24364082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 39000555 - 39000523
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcacc 155  Q
    |||||||||||||||||||||||||| ||||||    
T  39000555 aaatcaattcaatcaaaatcaattttaatcacc 39000523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 22548235 - 22548190
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  22548235 aaatcaattcacttaaaatcaatttttatcaccgcaaaaccaaaca 22548190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 5167381 - 5167426
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  5167381 aatcaattcattcaaaatcaattttcatcaccgcagaaccaaacac 5167426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 213216 - 213172
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||    
T  213216 aatcaatttaatcaaaatcaatttttgtcaccgcagaaccaaaca 213172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 37745833 - 37745789
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||    
T  37745833 aatcaattcactcaaaatcaattattatcaccgcaaaaccaaaca 37745789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 3476378 - 3476334
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    |||||||||| | ||||||||||||| |||||||| |||||||||    
T  3476378 aatcaattcacttaaaatcaatttttgtcaccacagaaccaaaca 3476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 11650706 - 11650662
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    |||||||||| ||||||||||||||| ||| | ||||||||||||    
T  11650706 aatcaattcactcaaaatcaatttttgtcaacgcaaaaccaaaca 11650662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 18355785 - 18355750
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccaca 158  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18355785 aaatcaattcactcaaaatcaatttttatcaccaca 18355750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 43024963 - 43025006
Alignment:
Q  125 atcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 168  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||    
T  43024963 atcaattcaatcaaaatcaatttttgtcaccgcaaacccaaaca 43025006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 8130111 - 8130065
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||||| |||||||||||||||||||||| || ||| ||||||    
T  8130111 aaatcaattctatcaaaatcaatttttatcaccgcagaactaaacac 8130065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 24297599 - 24297553
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 169  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||||    
T  24297599 aaatcaattctatcaaaattaatttttatcaccgcagaaccaaacac 24297553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 19601402 - 19601369
Alignment:
Q  123 aaatcaattcaatcaaaatcaatttttatcacca 156  Q
    ||||||||||||||||||||||||||| ||||||    
T  19601402 aaatcaattcaatcaaaatcaatttttgtcacca 19601369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 17526 - 17562
Alignment:
Q  124 aatcaattcaatcaaaatcaatttttatcaccacaaa 160  Q
    |||||||||| |||||||||||||| |||||||||||    
T  17526 aatcaattcactcaaaatcaattttcatcaccacaaa 17562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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