View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5626_low_13 (Length: 266)

Name: NF5626_low_13
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5626_low_13
NF5626_low_13
[»] chr8 (5 HSPs)
chr8 (153-256)||(38310319-38310422)
chr8 (1-90)||(38310164-38310256)
chr8 (200-240)||(38301721-38301761)
chr8 (31-75)||(38307431-38307475)
chr8 (31-72)||(38314818-38314859)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 38310319 - 38310422
Alignment:
Q  153 ctaatgttcaatgttggatgaaactagtatgtaaatctacttgaatgggaacatatttcaggtattgttcttgcaccttatttcacttggtttctctctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310319 ctaatgttcaatgttggatgaaactagtatgtaaatctacttgaatgggaacatatttcaggtattgttcttgcaccttatttcacttggtttctctctc 38310418  T
Q  253 tctg 256  Q
    ||||    
T  38310419 tctg 38310422  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38310164 - 38310256
Alignment:
Q  1 ttttgtgatgtttgttttg---ttatggtttgcaaaattaaaactatatatggttgttaggctatgttttttggacttactggcggacttaga 90  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310164 ttttgtgatgtttgttttggctttatggtttgcaaaattaaaactatatatggttgttaggctatgttttttggacttactggcggacttaga 38310256  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 38301721 - 38301761
Alignment:
Q  200 ggaacatatttcaggtattgttcttgcaccttatttcactt 240  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  38301721 ggaacaaatttcgggtattgttcttgcaccttatttcactt 38301761  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 38307431 - 38307475
Alignment:
Q  31 aaaattaaaactatatatggttgttaggctatgttttttggactt 75  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||    
T  38307431 aaaattaaaactatatacggttgttaggttatgttttttagactt 38307475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 38314818 - 38314859
Alignment:
Q  31 aaaattaaaactatatatggttgttaggctatgttttttgga 72  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  38314818 aaaattaagactatatatggttgttaggttatgttttctgga 38314859  T

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