View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_low_16 (Length: 238)
Name: NF5626_low_16
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38310158 - 38309936
Alignment:
| Q |
1 |
ttaaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgcttgctccgtttgtacatcaccatcaactttcttcattgtttcttc |
100 |
Q |
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| T |
38310158 |
ttaaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgcttgctccgtttgtacatcaccatcaactttcttcattgtttcttc |
38310059 |
T |
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| Q |
101 |
aaagtcgccgtcatcatcatcgccgtcgtctactccatctacataccataattgaggaggatgataattaaattgaacagtggctatcaaaacaattaaa |
200 |
Q |
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| T |
38310058 |
aaagtcgccgtcatcatcatcgccatcgtctactccatctacatatcataattgaggaggataataattaaattgaacagtggctatcaaaacaattaaa |
38309959 |
T |
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| Q |
201 |
tcatatatatttacattcaaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38309958 |
tcatatatatttacattcaaatt |
38309936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 38301447 - 38301294
Alignment:
| Q |
70 |
catcaccatcaactttcttcattgtttcttcaaagtcgccgtcatcatcatcgccgtcgtctactccatctacataccataattgaggaggatgataatt |
169 |
Q |
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||||| ||| ||||| |||||||||||||||||||| || |||| |||| | || ||| ||||||||||||| ||||||||| |||| | |||||| |
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| T |
38301447 |
catcaacataaacttcattcattgtttcttcaaagtcatcgccatcgccatcatcatcatcttctccatctacatatcataattgaagaggtttataatt |
38301348 |
T |
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| Q |
170 |
aaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaatt |
223 |
Q |
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||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| |
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| T |
38301347 |
caattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaatt |
38301294 |
T |
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