View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_low_19 (Length: 232)
Name: NF5626_low_19
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 15468726 - 15468535
Alignment:
| Q |
23 |
gtctacacattaatttattggtgctcataatcaaatattccactgaaaccatatttgaaacttgaagaaatgtgcgaatcatatcatttttcatttgcat |
122 |
Q |
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| T |
15468726 |
gtctacacattaatttattggtgctcataatcaaatattccactaaaaccacatttgaaacttgaagaaatgtgcgaatcatatcatttttcatttgcac |
15468627 |
T |
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| Q |
123 |
ggtttgattggtattattcttgaccatatatttgcattgaaaccatatttgaaacttggagttattttatcatctttgaaatttgaatagta |
214 |
Q |
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| T |
15468626 |
ggtttgattggtattattcttgaccatatatttgcactgaaaccatatttgaaacttgaagttattttatcatctttgaaatttgaatagta |
15468535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 15465478 - 15465509
Alignment:
| Q |
125 |
tttgattggtattattcttgaccatatatttg |
156 |
Q |
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| T |
15465478 |
tttgattggtattattcttgaccatatatttg |
15465509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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