View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_low_20 (Length: 228)
Name: NF5626_low_20
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 7148569 - 7148791
Alignment:
| Q |
6 |
atcttcctccaagtattagtagccatactataaaccttaactttagattcactgaaaaactcattaggatcacaaaaaacagcaacaactttgtaatcat |
105 |
Q |
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| T |
7148569 |
atcttcctccaagtattagtagccatactataaaccttaactttagattcactgaaaaactcattaggatcacaaaaaacagcaacaactttgtaatcat |
7148668 |
T |
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| Q |
106 |
cattcacatgatcataaccaagaccaaaacaagtaaaacaacctggtttccaattattccctaaaggtggtgactttttagagacccttattgaagggtt |
205 |
Q |
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| T |
7148669 |
cattcacatgatcataaccaagaccaaaacaagtaaaacaacctggtctccaattattccctaaaggtggtgactttttagagacccttattgaagggtt |
7148768 |
T |
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| Q |
206 |
ccaaagaagaacacaatcacctt |
228 |
Q |
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| T |
7148769 |
ccaaagaagaacacaatcacctt |
7148791 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 13093335 - 13093269
Alignment:
| Q |
158 |
attattccctaaaggtggtgactttttagagacccttattgaagggttccaaagaagaacacaatca |
224 |
Q |
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| T |
13093335 |
attattctccaaaggttgtgattttttctaaacccttgttgaagggttccaaataagaacacaatca |
13093269 |
T |
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