View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_low_3 (Length: 521)
Name: NF5626_low_3
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 506
Target Start/End: Original strand, 35808386 - 35808875
Alignment:
| Q |
17 |
caacaaaataagggcaagggggtgataacagcattaaaatatataaggaatttgaacgaaatcatcgacagtttcatttcgagtaaacgattgagacgaa |
116 |
Q |
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| T |
35808386 |
caacaaaataagggaaagggggtgataacagcattaaaatatataaggaatttgaacgaaatcatcgacagtttcatttcgagtaaacgattgagacgaa |
35808485 |
T |
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| Q |
117 |
gaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactcaggaaaaggtggcaaactaacatttgaattcatcatatcattggaaaaagaag |
216 |
Q |
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| T |
35808486 |
gaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactcaggaaaaggtggcaaactaacatttgaattcatcatatcattggaaaaagaag |
35808585 |
T |
|
| Q |
217 |
aagtaggagtagcagcagccgcagcgcaacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35808586 |
aagtaggagtagcagcagccgcagcgcaacgagccaggcgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctat |
35808685 |
T |
|
| Q |
317 |
agcacctatgcatccatagacagggtctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35808686 |
agcacctatgcatccatagacagggtctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatc |
35808785 |
T |
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| Q |
417 |
agaatcttgctcacattgcttgctccaaatactttgtgaactttcgcgaatttcttgcactcatcggagcgaaagtatggcgcaaatata |
506 |
Q |
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| T |
35808786 |
agaatcttgctcacattgcttgctccaaatactttgtgaactttcgcgaatttcttgcactcatcggagcgaaagtatggcgcaaatata |
35808875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 243 - 480
Target Start/End: Original strand, 32036245 - 32036482
Alignment:
| Q |
243 |
caacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
342 |
Q |
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|||||||| ||||| ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| |||||||| || || |||| |
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| T |
32036245 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccgtaaactgggt |
32036344 |
T |
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| Q |
343 |
ctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatcagaatcttgctcacattgcttgctcc |
442 |
Q |
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| T |
32036345 |
ctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttgctcc |
32036444 |
T |
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| Q |
443 |
aaatactttgtgaactttcgcgaatttcttgcactcat |
480 |
Q |
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| T |
32036445 |
aaatactttgtgaactttggcgaatttcttgcactcat |
32036482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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