View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_low_6 (Length: 485)
Name: NF5626_low_6
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 220 - 395
Target Start/End: Original strand, 1042218 - 1042392
Alignment:
| Q |
220 |
aaagttttattcataagagtaagatcgttagcattgttttgtgatttggacctgtgtggaaaatgttgatattaataagttatattctgaaatatttgtt |
319 |
Q |
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| T |
1042218 |
aaagttttattcataagagtaagattgttaacattgtttggtgatttggacctgtgtggaaaat-ttgatattaataagttatattctgaaatatttgat |
1042316 |
T |
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| Q |
320 |
gcagcatctcgacgaggaaaaaattatgaacattgtgagtcctgaaaaggatgtggatggatttcatcctttaaat |
395 |
Q |
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| T |
1042317 |
gcagcatcttgacgaggaaagaattatgaacattgtgagtcctgaaaaggatgtggatggatttcatcctttaaat |
1042392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 392 - 464
Target Start/End: Original strand, 1042484 - 1042556
Alignment:
| Q |
392 |
aaatcagaggggaaaaagttgcaataatcggaaggggtaaaattgctggattaccaacctcattgctattgca |
464 |
Q |
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| T |
1042484 |
aaatcagagggaaaagagttgcaataatcggaaggggtaaaattgcagggttaccaacttcattgctattgca |
1042556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 464
Target Start/End: Original strand, 1066105 - 1066177
Alignment:
| Q |
392 |
aaatcagaggggaaaaagttgcaataatcggaaggggtaaaattgctggattaccaacctcattgctattgca |
464 |
Q |
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| T |
1066105 |
aaatcagagggaaaaaagttgcaataattggaagggataaaattgttgggttaccggcttcattgctaatgca |
1066177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 1042146 - 1042209
Alignment:
| Q |
26 |
aaaatagatcatgtaatataaatgagaaaggttatctttgaatttttaatcaagcgtatctata |
89 |
Q |
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| T |
1042146 |
aaaatagaacatgtagtagaaatgagaaaggttatctttgaatgattaatcaagtgtatatata |
1042209 |
T |
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