View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5626_low_7 (Length: 421)
Name: NF5626_low_7
Description: NF5626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5626_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 43625348 - 43624967
Alignment:
| Q |
19 |
ccttattggaattaccattatctaattctatgtattaggaagtgaactttcttaattcactcccaatctgttcatgttattcacagttgttacgatataa |
118 |
Q |
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| T |
43625348 |
ccttattggaat-accattatctaattctatgtattaggaagtgaactttcttaattcactcccaatctgttcatgttattcacagttgttacgatataa |
43625250 |
T |
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| Q |
119 |
cttacgttacttggggttaagttctatattattgatttatttctatttcgtcgtattaatgtccaccacatgttatttttaatgtcaaattgtgtcttca |
218 |
Q |
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| T |
43625249 |
cttacgttacttggggttaagttctatattatt--------tctatttcgtcgtattaatgtccaccacatgttatttttaatgtcaaattgtgtcttca |
43625158 |
T |
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| Q |
219 |
taatctgaaattggggatcacaaatcagcaactcacgcggggtataacacctgcatgattgtgtacacagcctcttctgacgatccctgaaagtcagaat |
318 |
Q |
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| T |
43625157 |
taacctgaaattggggatcacaaatcagcaacttacgcggggtataacacctgcatgattgtgtacatagcctcttc-gacgatccctgagagtcagaat |
43625059 |
T |
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| Q |
319 |
attcactgtcaacatacccccaatataaaggatccacggtacacatcatatccctttggtcccttgcctttatccttcttcactcatcctttg |
411 |
Q |
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| T |
43625058 |
attcagtgtcaacatgcccccaatatgaaggat-cacggtacacatcatatccctctggtcccttgcctttatccttcttcactcatcctttg |
43624967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 35901290 - 35901352
Alignment:
| Q |
89 |
ttcatgttattcacagttgttacgatataacttacgttacttggggttaagttctatattatt |
151 |
Q |
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| T |
35901290 |
ttcatgttattcacagttgttacgatataacttactttacttggggttaagttctatattatt |
35901352 |
T |
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