View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5627-Insertion-4 (Length: 774)
Name: NF5627-Insertion-4
Description: NF5627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5627-Insertion-4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 154 - 774
Target Start/End: Complemental strand, 40200347 - 40199726
Alignment:
| Q |
154 |
acgttaacgaggtcgcttatgagttagtgcagacagctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataa |
253 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
40200347 |
acgttaacgaggttgcttatgagttagtgcagacagctcccatattatagatgatgctcccttatgtatttgaaacattatagctaatgaaatgcgatga |
40200248 |
T |
|
| Q |
254 |
atttcttccttcaaaaaataagtcattgatttaattctt-aacccctaaatacacttgttttgaactttgatggaaatgaagaatcaattattttgagaa |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40200247 |
atttcttccttcaaaaaataagtcattgatttaattctttaacccctaaatacacttgttttgaactttgatggaaatgaagaatcaattattttgagaa |
40200148 |
T |
|
| Q |
353 |
agatattcaaaatgctacgtcctcgtataaaacagactcacactcaaatttttgtacattagattgaaaattcaagatggtgaaataaccgggtttaatc |
452 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40200147 |
agatattcaaaatgctacgtcctcgcataaaacagactcacactcaaatttttgtacattagattgaaaattcaagatggtgaaataaccgggtttaatc |
40200048 |
T |
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| Q |
453 |
gaaacaaatggatatccatatgctttccttccaacacaattaagctagtaaaattgttcaattgtaggagtataaaaattgtgtgaaaccaccaaaagta |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40200047 |
gaaacaaatggatatccatatgctttccttccaacacaattaagctagtaaaattgttcaattgtaggagtataaaaattgtgtgaaactaccaaaagta |
40199948 |
T |
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| Q |
553 |
tttcacgtataatacacacattattgaattttggaaagacaaatttcaacactttacaaaacccattttgaaactttaccaaacttccacgattaaataa |
652 |
Q |
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| T |
40199947 |
tttcacgtataatacacgcattattgaattttggaaagacaaacttcaacactttacaaaacccattttgaaactttaccaaacttccacgattaaataa |
40199848 |
T |
|
| Q |
653 |
tcacataatcatattgtataagaccccatcactctcaagtacacgtcgtgtagttagcatcattcaaagtcgtgtgctttttactttcatttcatcaccc |
752 |
Q |
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| T |
40199847 |
tcacataatcatattgtataagaccccatcactctcaagtacacgtcgtgtagttagcatcattcaaagtcgtgtgctttttactttcatttcatcaccc |
40199748 |
T |
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| Q |
753 |
tttgccaacacctgttttaggg |
774 |
Q |
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| T |
40199747 |
tttgccaacacgtgttttaggg |
40199726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 40200442 - 40200353
Alignment:
| Q |
23 |
ttcctcttccatgttcatatgtagttttttataccatattagtgagtttggttctattatttatttttatgtttgtagacgtttgttacaaaatag |
118 |
Q |
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| T |
40200442 |
ttcctcttccatgttcatatatagttttttataccatattagtgagtttggttctatta------tttctgcttgtagacgtttgttacaaaatag |
40200353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 33368050 - 33367962
Alignment:
| Q |
92 |
tgtttgtagacgtttgttacaaaatagtttttagaactttcatgtcgagtttaatatgagatacgttaacgaggtcgcttatgagttag |
180 |
Q |
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| T |
33368050 |
tgtttgtagacgtttgttacaaaatagtttttaaaactctcatgtcgagtttaatatgaggtaagtaaaagaggttgcttacgagttag |
33367962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 8267274 - 8267315
Alignment:
| Q |
106 |
tgttacaaaatagtttttagaactttcatgtcgagtttaata |
147 |
Q |
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|||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
8267274 |
tgtttcaaaatagtttttaaaactctcatgtcgagtttaata |
8267315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 36677706 - 36677789
Alignment:
| Q |
188 |
agctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa |
271 |
Q |
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||||| ||| |||||||||||| ||||| |||||||||| ||||| |||||||| |||||| ||||||||||||||| |||||| |
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| T |
36677706 |
agctcgcatgttatagatgatgttccctcatgtatttgacacattttagctaatgaaatgcaataaatttcttccttaaaaaaa |
36677789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 9892891 - 9892830
Alignment:
| Q |
88 |
tttatgtttgtagacgtttgttacaaaatagtttttagaactttcatgtcgagtttaatatg |
149 |
Q |
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|||||| ||||| ||| ||||||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
9892891 |
tttatgcttgtaaacgattgttacaatatagattttagaactctcatgtcgagtttaatatg |
9892830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 31957015 - 31956940
Alignment:
| Q |
188 |
agctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttcct |
263 |
Q |
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|||||| |||||||||||||||| |||| ||||||||| ||||| || ||||| |||||| || || |||||||| |
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| T |
31957015 |
agctcctatattatagatgatgcaccctcatgtatttggcacattttaactaatgaaatgcaatgaaattcttcct |
31956940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 10346500 - 10346423
Alignment:
| Q |
194 |
catattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa |
271 |
Q |
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|||||||||||||||| |||| |||||||||| ||||| |||||||| |||||| || |||||||||||| |||||| |
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| T |
10346500 |
catattatagatgatgtaccctcatgtatttgacacattttagctaatgaaatgcaatgaatttcttccttaaaaaaa |
10346423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 33315150 - 33315291
Alignment:
| Q |
105 |
ttgttacaaaatagtttttagaactttcatgtcgagtttaatatgagatacgttaacgaggtcgcttatgagttagtgcagac---agctcccatattat |
201 |
Q |
| |
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|||||||||||||| ||| | |||||||||||||||||||||| ||| || || || | ||||| | | ||||||| ||| |||||||||||||| |
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| T |
33315150 |
ttgttacaaaatagatttca-aactttcatgtcgagtttaataggaggtaagtaaatggggtcgttcacgagttagctcaggtcctagctcccatattat |
33315248 |
T |
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| Q |
202 |
agatgatgctcccttatgtatttgaaacattatagctaataaa |
244 |
Q |
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|||||||||||| | |||||||||| ||||| || |||||||| |
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| T |
33315249 |
agatgatgctccttcatgtatttgacacattttaactaataaa |
33315291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 17321968 - 17322046
Alignment:
| Q |
192 |
cccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaa |
270 |
Q |
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|||||||||| ||||||| |||| |||||| ||| ||||| |||||||| || ||| || |||||||||||| ||||| |
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| T |
17321968 |
cccatattattgatgatgtaccctcatgtatgtgacacattttagctaatgaattgcaatgaatttcttccttaaaaaa |
17322046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 9808734 - 9808655
Alignment:
| Q |
192 |
cccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa |
271 |
Q |
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|||||||||||||||||| ||| | ||||||||| ||| | |||||||| |||||| ||||||||||||| | |||||| |
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| T |
9808734 |
cccatattatagatgatgttccttcatgtatttgtcacactttagctaatgaaatgcaataaatttcttccataaaaaaa |
9808655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 6969713 - 6969784
Alignment:
| Q |
200 |
atagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa |
271 |
Q |
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|||||||||||||| | |||||||||| ||||| |||||| | |||||| || |||||||| ||||||||| |
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| T |
6969713 |
atagatgatgctccttcatgtatttgacacattttagctattgaaatgcaatgtatttcttctttcaaaaaa |
6969784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 1311237 - 1311303
Alignment:
| Q |
194 |
catattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttctt |
260 |
Q |
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||||||||||||| ||| || ||||| |||||||||||| || ||||||||||| || |||||||| |
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| T |
1311237 |
catattatagatggtgcacctttatgcatttgaaacattttacctaataaaatgaaatgaatttctt |
1311303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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