View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5627-Insertion-5 (Length: 664)
Name: NF5627-Insertion-5
Description: NF5627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5627-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 117 - 664
Target Start/End: Original strand, 44692796 - 44693344
Alignment:
| Q |
117 |
gcggtggaatcttcgtaggaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtg |
216 |
Q |
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| T |
44692796 |
gcggtggaatcttcgtagaaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaatatctaatcacctttttgtg |
44692895 |
T |
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| Q |
217 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttgga |
316 |
Q |
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| T |
44692896 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggctctgttgga |
44692995 |
T |
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| Q |
317 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692996 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
44693095 |
T |
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| Q |
417 |
tgacaaggtgaaggaagtgttggaaatcattga-gaggttaaagttttatcgtggaggtggtgcctatcccgccttaatataccggcctgcctttattat |
515 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
44693096 |
tgacaaggtgaaggaagtgttggaaatcgttgaggaggttaaagttttatcgtggaggtggtgcctatccagccttaagataccggcctgcctttattat |
44693195 |
T |
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| Q |
516 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
615 |
Q |
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| T |
44693196 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
44693295 |
T |
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| Q |
616 |
ctggttgtctggttttcggggttgattccgtctcagtggtgctggatgt |
664 |
Q |
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| T |
44693296 |
ctagttgtctggttttcggggttgattccgtctcagtggtgctggatgt |
44693344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 44692643 - 44692758
Alignment:
| Q |
8 |
aaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggct |
107 |
Q |
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| T |
44692643 |
aaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggct |
44692742 |
T |
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| Q |
108 |
ccgtcaaaagcggtgg |
123 |
Q |
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| T |
44692743 |
ccgtcaaaagtggtgg |
44692758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 142 - 441
Target Start/End: Complemental strand, 34866371 - 34866072
Alignment:
| Q |
142 |
gccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtgcattgtccggtggctagagggattt |
241 |
Q |
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||||| || |||||||| ||||| || |||| || ||||||| || | ||||| ||| | |||||| || | ||||||| ||||||||||||||||| |
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| T |
34866371 |
gcccttcctccggaggtctcggtgaggtgtgctttatgcgaggttgagacggaaacatccattcacctcttcgcgcattgtatggtggctagagggattt |
34866272 |
T |
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| Q |
242 |
ggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttggaatgcgggagcctctaataagaagat |
341 |
Q |
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| T |
34866271 |
ggttagaactccttaagtgggttgataatatgtttttgatgcctcaaaatgtttttaatcattggttgtgttggaatgcgggtgcctctaataagaaatt |
34866172 |
T |
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| Q |
342 |
gattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaatgacaaggtgaaggaagtgttggaa |
441 |
Q |
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| T |
34866171 |
gattaagggttttagactcatttggcatgccgcaatttgggttatttggaagatgaggaatgataagatttttaacgacaaggagaaagaggtgatggaa |
34866072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 34866548 - 34866434
Alignment:
| Q |
8 |
aaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggct |
107 |
Q |
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| T |
34866548 |
aaatctatgtatgcg-aagtttgaagggagatggattgtggagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggcc |
34866450 |
T |
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| Q |
108 |
ccgtcaaaagcggtgg |
123 |
Q |
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| T |
34866449 |
ccctcaaaagtggtgg |
34866434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 28890672 - 28890608
Alignment:
| Q |
362 |
tttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaatgacaaggtg |
426 |
Q |
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| T |
28890672 |
tttggcacgcaacaatttgggtgctttggaaatatagaaatggtcaaatttttaatgacaaggtg |
28890608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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