View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5627-Insertion-7 (Length: 280)
Name: NF5627-Insertion-7
Description: NF5627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5627-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 4106760 - 4106488
Alignment:
| Q |
8 |
caattttggttactgaagacaacaacagaacacatacaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctg |
107 |
Q |
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| T |
4106760 |
caattttggttactgaagacaacaacagaacacatacaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctg |
4106661 |
T |
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| Q |
108 |
ataatggccaattcacatttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaa |
207 |
Q |
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| T |
4106660 |
ataatggccaattcacatttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaa |
4106561 |
T |
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| Q |
208 |
attgagttgacacccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggt |
280 |
Q |
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| T |
4106560 |
attgagttgacacccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggt |
4106488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 4129925 - 4129675
Alignment:
| Q |
30 |
caacagaacacatacaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctgataatggccaattcacatttgt |
129 |
Q |
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| T |
4129925 |
caacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctct |
4129826 |
T |
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| Q |
130 |
aagaacagtaaactcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaaattgagttgacacccgccaaat |
229 |
Q |
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| T |
4129825 |
aagaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgagttgacacccgccaaat |
4129726 |
T |
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| Q |
230 |
tgattacttggatctatcaacgaataaccataaggacatttacaagtaggt |
280 |
Q |
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| T |
4129725 |
tgattacttggatctatcaacgaataaccataaggacatttacaagtaggt |
4129675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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