View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5627_high_3 (Length: 404)
Name: NF5627_high_3
Description: NF5627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5627_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 189 - 366
Target Start/End: Complemental strand, 41089689 - 41089512
Alignment:
| Q |
189 |
gtagcaagcaatagcatggtattttatttagaaatagtagttatgataagctccatgcatagatccatcaaaccaaatcagatgacttaaaaacttgcaa |
288 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
41089689 |
gtagctagcaatagcatggtgttttatttagaaatagtagttatgataagctccatgcatagatccatcaaaccaaatcagatgacttaaaagctagcaa |
41089590 |
T |
|
| Q |
289 |
tattatctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagaccatgaatgtaggtggtgtagttgacggg |
366 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
41089589 |
tattgtctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagaccatgcatggaggtggtgtagttgacggg |
41089512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 41089873 - 41089745
Alignment:
| Q |
11 |
catagggtgtaacaacaatcatagttcaattttcaaccatcgatccagctaattgaaaaattgattaataaaaatattgaagtacccttaactcaaacac |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41089873 |
catagggtgtaacaacaatcataattcaattttcaaccatcgatccaactaattgaaaaattgattaataaaaatattgaagtacccttaactcaaacac |
41089774 |
T |
|
| Q |
111 |
aggttcaatcatggtctttatttagaagg |
139 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
41089773 |
aggttcaatcacggtctttatttagaagg |
41089745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 41074541 - 41074431
Alignment:
| Q |
255 |
atcaaaccaaatcagatgacttaaaaacttgcaatattatctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagaccatgaatgtaggtggt |
354 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||| | || ||| |||||||| |||||||||| ||||||||||||||||| | || | |
|
|
| T |
41074541 |
atcaaaccaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtggccaagtttgacttgaaagaccatgaatggatgtatt |
41074442 |
T |
|
| Q |
355 |
gtagttgacgg |
365 |
Q |
| |
|
||||||||||| |
|
|
| T |
41074441 |
gtagttgacgg |
41074431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University