View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5627_low_1 (Length: 428)
Name: NF5627_low_1
Description: NF5627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5627_low_1 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 44033879 - 44033479
Alignment:
| Q |
1 |
atcaagggattccaaaattgtcttttctagaaccaatgaccaataactcatgtttgagtaaatgtatccaacccaagttcttggcaatgttaggcagcag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44033879 |
atcaatggattccaaaattgtcttttctagaaccaatgaccaataactcatgtttgagtaaatgtatccaacccaagttcttggcaatgttaggcagcag |
44033780 |
T |
|
| Q |
101 |
cttgcagccaccctcatttgcagttagttaccttggaatattaattagtacattcaattacaatgagcattgtcaaaattattccaaggttaggctaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44033779 |
cttgcagccaccctcatttgcagttagttaccttggaatattaattagtacattcaattacaatgagcattgtcaaaattattccaagattaggctaaat |
44033680 |
T |
|
| Q |
201 |
catctcaaacatttttcttgtggatggaattcaattcatcatgggtatggagggagtagatgcattctttaatccaatgtacttatgtaatacnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44033679 |
catctcaaacatttttcttgtggatggaattcaattcatcatgggtatggagggagtagatgcattctttaatccaatgtacttatgtaatac------- |
44033587 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnncataaa-aaatggaaagggaggaactttattaattaaagtgacactaatgattatttacaattgtttttgagatgatgacaattc |
399 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44033586 |
--------tttttttcataaaaaaatggaaagggaggaactttattaattaaagtga-------------ttacaattgtttttgagatgatgacaattc |
44033508 |
T |
|
| Q |
400 |
tgtcttttataatttcgagaatttactct |
428 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
44033507 |
tgtcttttaaaatttcgagaatttactct |
44033479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 41302954 - 41302991
Alignment:
| Q |
330 |
agggaggaactttattaattaaagtgacactaatgatt |
367 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
41302954 |
agggaggaattttattaattaaaatgacactaatgatt |
41302991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University