View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5627_low_2 (Length: 416)
Name: NF5627_low_2
Description: NF5627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5627_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 41089490 - 41089090
Alignment:
| Q |
1 |
aaaaaccaatcctcaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacattcaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41089490 |
aaaaaccaatccttaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacattcaa |
41089391 |
T |
|
| Q |
101 |
tgtcttagagagattgtcataggagatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaatgagttgacatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41089390 |
tgtcttagagagattgtcataggagatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaatgagttgacatca |
41089291 |
T |
|
| Q |
201 |
attccaacatgagtgtatttgggatcccatggactcacaccatcaaactctacaccaacaaattgattcaacgcatttttggagtcaataactccaaggt |
300 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |
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| T |
41089290 |
attccaacatgagtgtatttgggatcccatgaactaacaccatcaaactctacaccaataaattgattgaatgcatttttggagtcaataactccaaggt |
41089191 |
T |
|
| Q |
301 |
atccaccatctgagttgttaggaagatagttttgatctagtggtaaaagatggaagacaagtccactacctggtgaaaaatctttgaagtctacaacttt |
400 |
Q |
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| T |
41089190 |
atccaccatctgagttgttaggaagatagttttgatctagtggtaaaagatggaagaaaagtccactacctggtgaaaaatctttgaagtctacaacttt |
41089091 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
41089090 |
g |
41089090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 41074390 - 41074204
Alignment:
| Q |
1 |
aaaaaccaatcctcaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacattcaa |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41074390 |
aaaaaccaatcctcactgtgtccggaagcactgctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaatcacattcaa |
41074291 |
T |
|
| Q |
101 |
tgtcttagagagattgtcataggagatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaa |
187 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
41074290 |
tgtcttagagagactgtcataggagatatttacatcgaccaaggcgccactcactctattccatttcactgtccttaaagaaatcaa |
41074204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 41074147 - 41074079
Alignment:
| Q |
241 |
catcaaactctacaccaacaaattgattcaacgcatttttggagtcaataactccaaggtatccaccat |
309 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||| || ||||| ||||||||||| | |||||| |
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| T |
41074147 |
catcaaactctacaccaacaaattgattgtaagcattgttatcgtcaacaactccaaggtttgcaccat |
41074079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 21482903 - 21482867
Alignment:
| Q |
243 |
tcaaactctacaccaacaaattgattcaacgcatttt |
279 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||| |
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| T |
21482903 |
tcaaactctacaccaacaaattgattgaaagcatttt |
21482867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 21493055 - 21493019
Alignment:
| Q |
243 |
tcaaactctacaccaacaaattgattcaacgcatttt |
279 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||| |
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| T |
21493055 |
tcaaactctacaccaacaaattgattgaaagcatttt |
21493019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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