View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628-Insertion-11 (Length: 432)
Name: NF5628-Insertion-11
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628-Insertion-11 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Complemental strand, 32549702 - 32549277
Alignment:
| Q |
7 |
atagcagcagctccgtttctgtaagtgttgtagaatttcttttatatgtgtatggtatatgaattagtagtatgataataaattttgcaagggattttgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32549702 |
atagcagcagctccgtttctgtaagtgttgtagaatttcttttatatgtgtatggtatatgaattagtagtatgataataaattttgcaagggattttgt |
32549603 |
T |
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| Q |
107 |
attcttgcggtgcagatgcaaatattcatagacatcatgtttgaaaacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32549602 |
attcttgcggtgcagatgcaaatattcatagacatcatgtttgaaaacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaaga |
32549503 |
T |
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| Q |
207 |
agaagattcaggacaaggaagggatcccagtgcacggatatgacttgttctttgacaatgaggcgctatgttccaaccgccacacccttgccaactacaa |
306 |
Q |
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| T |
32549502 |
agaagattcaggacaaggaagggatcccagtgcacggatatgacttgttctttgacaatgaggcgctatgttccaaccgccacacccttgccaactacaa |
32549403 |
T |
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| Q |
307 |
catccaagataattcaactattgacctcgttgtccgtatcatggcggattagatcaccacctcatcttgctgccgccataggcgacactataaatgaaat |
406 |
Q |
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| T |
32549402 |
catccaagataattcaactattgacctcgttgtccgtatcatggcggattagatcaccacctcatcttgctgccgccataggcgacactataaatgaaat |
32549303 |
T |
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| Q |
407 |
caaacattttaacagtacttttgttc |
432 |
Q |
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| T |
32549302 |
caaacattttaacagtacttttgttc |
32549277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 32655797 - 32655666
Alignment:
| Q |
111 |
ttgcggtgcagatgcaaatattcatagacatcatgtttgaaaacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaagaagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| |
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| T |
32655797 |
ttgcggtgcagatgcaaatattcatagacatcatgtatgaaaacaagaggttccctctaatggttaagagttcagacacaatactcgatgtgaagaagaa |
32655698 |
T |
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| Q |
211 |
gattcaggacaaggaagggatcccagtgcacg |
242 |
Q |
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| T |
32655697 |
gattcaggacaaggaagggatcccggtgcacg |
32655666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 290 - 432
Target Start/End: Complemental strand, 32552921 - 32552782
Alignment:
| Q |
290 |
acccttgccaactacaacatccaagataattcaactattgacctcgttgtccgtatcatggcggattagatcaccacctcatcttgctgccgccataggc |
389 |
Q |
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|||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
32552921 |
acccttgccagttacaacatacaagacaagtcaactattgacctcgttgtccgtatcatggcggattagatcaccacctcatcgtgct---gccatcggc |
32552825 |
T |
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| Q |
390 |
gacactataaatgaaatcaaacattttaacagtacttttgttc |
432 |
Q |
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| T |
32552824 |
gaccctataaatgaaatcaaacattttaacagtacttttgttc |
32552782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 32748057 - 32748180
Alignment:
| Q |
111 |
ttgcggtgcagatgcaaatattcatagacatcatgtttgaaaacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaagaagaa |
210 |
Q |
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|||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || |
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| T |
32748057 |
ttgcggtgcagatgcaaatattcataaagatcatatatgaaaacaagaggttccccctgatggttaagagttcagacacgatactcaatgtgaagaaaaa |
32748156 |
T |
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| Q |
211 |
gattcaggacaaggaagggatccc |
234 |
Q |
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| T |
32748157 |
ggttcaggacaaggaagggatccc |
32748180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 32752109 - 32752231
Alignment:
| Q |
119 |
cagatgcaaatattcatagacatcatgtttgaaaacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcagg |
218 |
Q |
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|||||||||||||||||| | ||||||| || |||||||| |||||| || || ||||||||||||||||||||||| || ||||||||||| ||||| | |
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| T |
32752109 |
cagatgcaaatattcataaagatcatgtatggaaacaagatgttccccctcattgttaagagttcagacacgatactcgatgtgaagaagaaaattcatg |
32752208 |
T |
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| Q |
219 |
acaaggaagggatcccagtgcac |
241 |
Q |
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| T |
32752209 |
acaaggaagggatcccagtgcac |
32752231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 32755685 - 32755774
Alignment:
| Q |
152 |
aacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgcac |
241 |
Q |
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||||||| |||||| || |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
32755685 |
aacaagatgttccccctcatggttaagagttcagacacgatactggatgtgaaaaagaaaattcatgacaaggaagggatcccagtgcac |
32755774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 28475208 - 28475276
Alignment:
| Q |
167 |
ctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatccca |
235 |
Q |
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|||| |||| ||||||||||||||||| | || |||||||||||||||| |||||||||||||||||| |
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| T |
28475208 |
ctgagggttgagagttcagacacgatagtcgatgtgaagaagaagattcttgacaaggaagggatccca |
28475276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 37577544 - 37577629
Alignment:
| Q |
155 |
aagaggttccctctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgca |
240 |
Q |
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|||||| |||| |||| | |||||||||||||||||||| || |||||| ||||||||| ||||| |||||||||||| |||| |
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| T |
37577544 |
aagaggatcccactgaggattaagagttcagacacgatagccgatgtgaaggagaagattcttgacaatgaagggatcccaatgca |
37577629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 32895065 - 32895102
Alignment:
| Q |
156 |
agaggttccctctgatggttaagagttcagacacgata |
193 |
Q |
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|||||||||| |||||||||||||||||||||| |||| |
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| T |
32895065 |
agaggttccccctgatggttaagagttcagacaggata |
32895102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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