View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5628-Insertion-18 (Length: 192)
Name: NF5628-Insertion-18
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628-Insertion-18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 46359451 - 46359636
Alignment:
| Q |
7 |
aagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
46359451 |
aagaatgttgttaccacttaatatgatcaaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtg |
46359550 |
T |
|
| Q |
107 |
gacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagccttcaatatacgatatcagtataattattactg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359551 |
gacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagccttcaatatacgatatcagtataattattactg |
46359636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 44460581 - 44460736
Alignment:
| Q |
7 |
aagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
44460581 |
aagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtg |
44460680 |
T |
|
| Q |
107 |
gacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460681 |
gacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44460736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 44468114 - 44468269
Alignment:
| Q |
7 |
aagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
44468114 |
aagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtg |
44468213 |
T |
|
| Q |
107 |
gacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44468214 |
gacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44468269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 34502097 - 34502006
Alignment:
| Q |
10 |
aatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgagg |
101 |
Q |
| |
|
|||||| |||||| | |||| ||||||||| || ||||| ||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34502097 |
aatgttattaccattgaatacgatcaaaatactttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg |
34502006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 34501880 - 34501847
Alignment:
| Q |
159 |
ccttcaatatacgatatcagtataattattactg |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
34501880 |
ccttcaatatatgatatcagtataattattactg |
34501847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 44460804 - 44460837
Alignment:
| Q |
159 |
ccttcaatatacgatatcagtataattattactg |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
44460804 |
ccttcaatatatgatatcagtataattattactg |
44460837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 44468337 - 44468370
Alignment:
| Q |
159 |
ccttcaatatacgatatcagtataattattactg |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
44468337 |
ccttcaatatatgatatcagtataattattactg |
44468370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University