View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5628-Insertion-19 (Length: 180)

Name: NF5628-Insertion-19
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5628-Insertion-19
NF5628-Insertion-19
[»] chr3 (8 HSPs)
chr3 (8-180)||(47537545-47537717)
chr3 (8-180)||(26846144-26846316)
chr3 (8-180)||(48192076-48192248)
chr3 (8-180)||(50544501-50544673)
chr3 (8-169)||(43121357-43121518)
chr3 (8-159)||(23818869-23819020)
chr3 (8-49)||(19875651-19875692)
chr3 (152-180)||(17620327-17620355)
[»] chr6 (8 HSPs)
chr6 (8-180)||(18051140-18051312)
chr6 (11-180)||(17078885-17079054)
chr6 (8-180)||(649757-649929)
chr6 (8-180)||(11060553-11060725)
chr6 (8-180)||(17873510-17873681)
chr6 (9-180)||(9198944-9199115)
chr6 (71-179)||(503286-503394)
chr6 (71-174)||(8264506-8264609)
[»] chr1 (9 HSPs)
chr1 (8-180)||(30110615-30110788)
chr1 (9-180)||(10710853-10711024)
chr1 (26-180)||(17708256-17708410)
chr1 (8-171)||(26720919-26721082)
chr1 (8-177)||(47106374-47106541)
chr1 (8-174)||(28097656-28097820)
chr1 (76-180)||(25504752-25504856)
chr1 (7-48)||(36306193-36306234)
chr1 (146-177)||(24544868-24544899)
[»] chr5 (4 HSPs)
chr5 (8-180)||(7000456-7000628)
chr5 (8-180)||(20208410-20208582)
chr5 (26-180)||(4415409-4415563)
chr5 (8-177)||(6049503-6049670)
[»] chr4 (11 HSPs)
chr4 (8-180)||(53780322-53780494)
chr4 (8-180)||(34322010-34322182)
chr4 (8-175)||(10563022-10563189)
chr4 (8-155)||(20395884-20396031)
chr4 (9-180)||(42778515-42778686)
chr4 (52-180)||(53486688-53486816)
chr4 (123-180)||(18106362-18106419)
chr4 (8-61)||(53486627-53486680)
chr4 (76-180)||(49926025-49926129)
chr4 (76-180)||(19647986-19648090)
chr4 (146-177)||(25135685-25135716)
[»] scaffold0912 (1 HSPs)
scaffold0912 (8-180)||(2564-2736)
[»] chr7 (7 HSPs)
chr7 (8-180)||(4077552-4077724)
chr7 (8-180)||(34231976-34232148)
chr7 (85-180)||(7458439-7458534)
chr7 (71-180)||(25924347-25924456)
chr7 (145-177)||(8457001-8457033)
chr7 (146-177)||(18815218-18815249)
chr7 (152-179)||(40682099-40682126)
[»] chr8 (6 HSPs)
chr8 (27-180)||(23680439-23680592)
chr8 (8-180)||(17659108-17659280)
chr8 (8-177)||(45255520-45255689)
chr8 (24-180)||(36157434-36157588)
chr8 (7-48)||(7452761-7452802)
chr8 (146-179)||(29681621-29681654)
[»] scaffold0179 (2 HSPs)
scaffold0179 (8-180)||(7805-7981)
scaffold0179 (8-180)||(12739-12915)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-155)||(182417-182564)
[»] chr2 (3 HSPs)
chr2 (9-180)||(1380359-1380530)
chr2 (123-180)||(2999554-2999611)
chr2 (81-174)||(11028153-11028246)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 2e-81; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 47537717 - 47537545
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||    
T  47537717 gatggttcagacactttgttttggtatgataggtggttaggatcggtttctttttgtgagcggtttactaggttgttcgatctttctgagaacaaatcca 47537618  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47537617 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 47537545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 26846316 - 26846144
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||||||||||||||||||||| ||||| ||||||||| | ||||||||| || | ||||||||||||||||||||||||| ||||||||||||| |    
T  26846316 gatggttcagacactttgttttggtttgataagtggttagggtcggtttctttgtgtgagcggtttcctaggttgtttgatcttgctgagaacaaatcta 26846217  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  26846216 ttacggtggcaggattgttctctcttggtgttgagcagggtggggaggcgtggaggtgggggaggaggttgtg 26846144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 48192248 - 48192076
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||  |||||||||||||||||||||| ||||||||||| || |||||| || ||||||||| |||||||||| ||| ||||||||||||||||||    
T  48192248 gatggttttgacactttgttttggtatgataagtggttaggatcggcttctttgtgtgggcggttttctaggttgttcgatttttctgagaacaaatcca 48192149  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48192148 ttacggtggcaaacttgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 48192076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 50544673 - 50544501
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||| |  ||| ||||| | ||||||||||||| ||||||||||||||    
T  50544673 gatggttctgacaccttgttttggtatgataagtggttaggatcggtttctttttgtgaccggattcctcgattgtttgatctttatgagaacaaatcca 50544574  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| |||||   | ||||||||||||| ||||||| |||||||||| ||||||| | |||||||||||||||    
T  50544573 ttacggtggccaatttgttctctcttggagttgagcagggtggggagccgtggaattagaggaggaggttgtg 50544501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 43121357 - 43121518
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| || ||||||||||||| ||||| ||||||||| | ||  ||| | || | | |||||||| |  | ||||||||||  |||||||||| ||    
T  43121357 gatggttccgatactttgttttggtttgataagtggttagggtcggcatctctgtgtgtgaggtttcctcgcctatttgatctttacgagaacaaattca 43121456  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggagg 169  Q
    ||| ||||||  || ||| ||||||||||||||||| |||  ||||||||||||||||||||    
T  43121457 ttatagtggcgagtttgtgctctcttggtgttgagcagggaagggaggcgtggaagtggagg 43121518  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 23819020 - 23818869
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| || ||||||||||||| ||||| ||||||||| | ||  ||| | || | | |||||||| |  | |||||||||| |||||||||||  |    
T  23819020 gatggttccgatactttgttttggtttgataagtggttagggtcggcatctctatgtgtgaggtttcctcgcctatttgatctttatgagaacaaattaa 23818921  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtg 159  Q
    ||||| |||   || ||||||||||||||| ||||  ||| |||||||||||    
T  23818920 ttacaatggtgagtttgttctctcttggtgctgagtagggaggggaggcgtg 23818869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 19875692 - 19875651
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttagga 49  Q
    ||||||||  ||||||||||||||| ||||||||||||||||    
T  19875692 gatggttcgaacactttgttttggtttgataggtggttagga 19875651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 17620355 - 17620327
Alignment:
Q  152 gaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||||||||||||||||    
T  17620355 gaggcgtggaagtggaggaggaggttgtg 17620327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 3e-74; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 18051140 - 18051312
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  18051140 gatggttcagacactttgttttggtatgataagtggttaggatcggtctctttttgtgagcggtttcctaggttgtttgatctttctgagaacaaatcca 18051239  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18051240 ttacggtggcaggtttgttctctcttggtgttgagcggggtggggaggcgtgggagtggaggaggaggttgtg 18051312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 17078885 - 17079054
Alignment:
Q  11 ggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccatta 110  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  17078885 ggttcagacactttattttggtatgataagtggttaggatcggtctctttttgtgagcggtttcctaggttgtttgttctttctgagaacaaatccatta 17078984  T
Q  111 cagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    | ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  17078985 cggtggcaggtttgttctctcttggtgtagagcggggtggggaggcgtgggagtggaggaggaggttgtg 17079054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 649757 - 649929
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  649757 gatggtttagacactttgttttggtatgataagtggttaggatcggtttctttttgtgagcggtttcctaggttgttcgatctttctgagaacaaatcca 649856  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||  |||||||  |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  649857 ttacgatggcaggcttgttttctcttggtgtagagcggggtggggaggcgtggaagtggaggaggaggttgtg 649929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 11060553 - 11060725
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||| || | | |||||||||||||||| ||||||||||||||||||| ||    
T  11060553 gatgggtcagatactttgttttggtttgataggtggttaggttcggtttctttctgtgagaggtttcctaggttgttcgatctttctgagaacaaataca 11060652  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  11060653 ttacagtggcaggtctgttctctcttggtgtggagcggggaggggaggcgtggaagtggaggaggaggttgtg 11060725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 17873510 - 17873681
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||| |||||||| |  |||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||    
T  17873510 gatggttcagacacgttgttttgattcgataagtggttaggtttggtttctttttgtgagcggtttcctaggttgtttgatctttctgagaacaaataca 17873609  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| |||||| || ||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||    
T  17873610 ttacggtggcaagtttgttctctctt-gtgttaagcagggtggggaggcttggaagtggaggaggaggttgtg 17873681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 9198944 - 9199115
Alignment:
Q  9 atggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccat 108  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| | |||||||||||||||||| |||||||||| |||||||| |||    
T  9198944 atggttcagacactttgttttggtatgataagtggttagggtcggtgtctttttgtgagcggtttcctaggttgttcgatctttctgtgaacaaattcat 9199043  T
Q  109 tacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    | | |||||||   |||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  9199044 ttcggtggcagacttgttttctctttgtgtagagcagggtggggaggcgtggaagtggaggaggaggttgtg 9199115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 503286 - 503394
Alignment:
Q  71 tttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggagga 170  Q
    |||| |||||||||||| |||| ||| || ||||   |||||||| ||| | |||| |||||||||||||||  ||| || ||||||||| ||||||||     
T  503286 tttcgtaggttgtttgagctttttgaaaataaatatgttacagtgtcagatatgttttctcttggtgttgaggagggaggtgaggcgtggcagtggaggc 503385  T
Q  171 ggaggttgt 179  Q
    |||| ||||    
T  503386 ggagattgt 503394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 8264609 - 8264506
Alignment:
Q  71 tttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggagga 170  Q
    |||| |||||||||||| |||| ||| || ||||   |||||||| ||| | |||| |||||||||||||||  ||| || ||||||||| ||||||||     
T  8264609 tttcgtaggttgtttgagctttttgaaaataaatatgttacagtgtcagatatgttttctcttggtgttgaggagggaggtgaggcgtggcagtggaggc 8264510  T
Q  171 ggag 174  Q
    ||||    
T  8264509 ggag 8264506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 30110615 - 30110788
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggtt-aggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcc 106  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||     
T  30110615 gatggttcagacactttgttttggtatgataagtggtttaggatcggtttctttttgtgagaggtttcctaggttgtttgatctttctgagaacaaatct 30110714  T
Q  107 attacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30110715 attacggtggcaggtttgttctctcttggtgtagagcggggtggggaggcgtggaagtggaggaggaggttgtg 30110788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 10710853 - 10711024
Alignment:
Q  9 atggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccat 108  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  10710853 atggttcagacactttgttttggtatgataagtggttaggatcggtctctttttgtgagcgatttcctaggttgtttgatctttctgagaacaaatccat 10710952  T
Q  109 tacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||| ||||||||| ||||||||||| |||| |||||||||||||| || | | |||||||||||||||||||    
T  10710953 tacggtggcaggtttgttctctcttagtgtagagcggggtggggaagcatcggagtggaggaggaggttgtg 10711024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 17708410 - 17708256
Alignment:
Q  26 ttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgt 125  Q
    ||||||||||||| ||||||||||| ||||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| |||||||   |||    
T  17708410 ttttggtatgataagtggttaggatcggtttctttgtgtgagcggtttcctaggttgttcgatctttctgagaacaaatccattacggtggcagacttgt 17708311  T
Q  126 tctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708310 tctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 17708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 26721082 - 26720919
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||||||||||||||||||||| ||||| ||||||||| | ||||||||| || | ||||||||||||||||||||||||| ||||||||||||| |    
T  26721082 gatggttcagacactttgttttggtttgataagtggttagggtcggtttctttgtgtgagcggtttcctaggttgtttgatcttgctgagaacaaatcta 26720983  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggag 171  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26720982 ttacggtggcaggattgttctctcttggtgttgagcagggtggggaggcgtggaggtggaggag 26720919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 47106374 - 47106541
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| || ||||||||||||||||||| |||||||||||  ||||| ||| |   | ||||||||||||||||||||||||||||||| |||| ||    
T  47106374 gatggttccgatactttgttttggtatgataagtggttaggatcagtttcgtttcgtaagaggtttcctaggttgtttgatctttctgagaataaattca 47106473  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggtt 177  Q
    |||| ||||||||| ||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||    
T  47106474 ttacggtggcaggtttgttctctcttggtgttgagcagg--ggggaggcatggaagtggaggaggaggtt 47106541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 28097656 - 28097820
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| || ||| ||||||||| ||||| ||||||||| | |  | |||| || | | ||| |||| || |||||| |||||| |||||||||| ||    
T  28097656 gatggttccgatactctgttttggtttgataagtggttagggtcgcctactttgtgagtgaggtatcctgggctgtttgctctttccgagaacaaattca 28097755  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggag 174  Q
    ||||||||||   | |||| ||| ||||| |||||| ||  |||||||| |||||||||||||||||    
T  28097756 ttacagtggcgaatttgttttcttttggttttgagcagg--ggggaggcatggaagtggaggaggag 28097820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 25504752 - 25504856
Alignment:
Q  76 taggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggagg 175  Q
    |||||||||||| |||| ||| || ||||   |||||||| ||| | |||| |||||||||||||||  ||| || ||||||||| |||||||| ||||     
T  25504752 taggttgtttgagctttttgaaaataaatatgttacagtgtcagatatgttttctcttggtgttgaggagggaggtgaggcgtggcagtggaggcggaga 25504851  T
Q  176 ttgtg 180  Q
    |||||    
T  25504852 ttgtg 25504856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 36306234 - 36306193
Alignment:
Q  7 agatggttcagacactttgttttggtatgataggtggttagg 48  Q
    ||||||||| || || ||||||||||||||||||||||||||    
T  36306234 agatggttctgatacgttgttttggtatgataggtggttagg 36306193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 24544868 - 24544899
Alignment:
Q  146 ggtggggaggcgtggaagtggaggaggaggtt 177  Q
    ||||| ||||||||||||||||||||||||||    
T  24544868 ggtggtgaggcgtggaagtggaggaggaggtt 24544899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 5e-67; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 7000456 - 7000628
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||  |||||||    
T  7000456 gatggtttagacacttttttttggtatgataggtggttaggattggtttctttttgtgagcggtttcctaggttgttcgatctttctgagagtaaatcca 7000555  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7000556 ttacagtggcatgtctgttttctcttggagttgagcggggtggggaggcgtggaagtggaagaggaggttgtg 7000628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 20208410 - 20208582
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||||| ||||||||||||||| ||||| ||||||||| | ||||||||| || | ||||||||||||||||||||||||| ||||||||||||| |    
T  20208410 gatggttcaaacactttgttttggtttgataagtggttagggtcggtttctttgtgtgagcggtttcctaggttgtttgatcttgctgagaacaaatcta 20208509  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  20208510 ttacggtggcaggattgttctctcttggtgttgagcagggtggggaggcgtggaggtggaggaggaggttgtg 20208582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 7e-54
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 4415409 - 4415563
Alignment:
Q  26 ttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgt 125  Q
    ||||||||||||| ||||||||||| ||||||||| || | |||||||||||||||||| ||||||  |||||||||||||||||| |||||||   |||    
T  4415409 ttttggtatgataagtggttaggatcggtttctttgtgtgagcggtttcctaggttgttcgatcttgttgagaacaaatccattacggtggcagacttgt 4415508  T
Q  126 tctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4415509 tctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 4415563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 6049670 - 6049503
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| || ||||||||||||||||||| |||||| ||||  ||||| ||| | | | |||||||||||||||||||||||||||| || |||||||    
T  6049670 gatggttctgatactttgttttggtatgataagtggtttggatcagtttcgtttcgtgagaggtttcctaggttgtttgatctttctgacaataaatcca 6049571  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggtt 177  Q
    |||| ||||||||| |||||||| ||||||| |||| ||  |||||||||||||||||||||||||||||    
T  6049570 ttacggtggcaggtttgttctcttttggtgtcgagcagg--ggggaggcgtggaagtggaggaggaggtt 6049503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 5e-67; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 53780494 - 53780322
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||||||||||||||| |||| ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  53780494 gatggttcagacactttgttttggtacgataagtggttaggttcggtttctttttgtgagcggtttcctaggttgtttgatctttctgagaacaaatcca 53780395  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||  |||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  53780394 ttacgatggcaggtttgttctctcttggtgttgagcagggtggggaggcttggaagtggaggaggaggttgtg 53780322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 34322010 - 34322182
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| |||||||||||||||||||||||||||||| |||  |||||||| || | |||||||||||||||||| |||||| |||||||||||||||    
T  34322010 gatggttctgacactttgttttggtatgataggtggttatgatcagtttctttgtgtgagcggtttcctaggttgttcgatcttgctgagaacaaatcca 34322109  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34322110 ttacggtggcagacttgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 34322182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 10563022 - 10563189
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||||||||||||||| |||| ||||||||| | |||||||||||| | || |||||||||||||||||||||||||||||||||| |||    
T  10563022 gatggttcagacactttgttttggtacgataagtggttaggttcggtttctttttgtgagcagtttcctaggttgtttgatctttctgagaacaaaccca 10563121  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggagg 175  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  10563122 ttacggtggcaggtttgttctctcttggtgttgagcagggtggggaggcttggaagtggaggaggagg 10563189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 20396031 - 20395884
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||| ||||||||||| || | ||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  20396031 gatggttcagacacgttgttttggtacgaaaagtggttaggatcggtctctttttgtgagcggtttcctaggttgtttgatctttctgagaacaaatcca 20395932  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggagg 155  Q
    || | || |||||| ||||||||||||||||||||||||||| |||||    
T  20395931 tttcggtcgcaggtttgttctctcttggtgttgagcggggtgtggagg 20395884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 42778686 - 42778515
Alignment:
Q  9 atggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccat 108  Q
    |||||||||||||||||||||||| |||||  |||||||| | ||| |||||||| | |||||||||||||||||| ||||| |||| ||| |||| |||    
T  42778686 atggttcagacactttgttttggtttgataaatggttagggtcggtgtctttttgtgagcggtttcctaggttgttcgatctctctgtgaataaattcat 42778587  T
Q  109 tacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    | | ||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42778586 ttcggtggcagatttgttttctcttggtgtagagcggggtggggaggcgtggaagtggaggaggaggttgtg 42778515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 53486688 - 53486816
Alignment:
Q  52 ggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggg 151  Q
    |||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||  ||||||   |||| ||||||||||| ||||||||||||    
T  53486688 ggtttcttttggtgagcggtttcctaggttgttcgatctttctgagaacaaatccattacgatggcagacttgttttctcttggtgtagagcggggtggg 53486787  T
Q  152 gaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||||||||||||||||    
T  53486788 gaggcgtggaagtggaggaggaggttgtg 53486816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 18106362 - 18106419
Alignment:
Q  123 tgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18106362 tgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 18106419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 53486627 - 53486680
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttt 61  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  53486627 gatggctcagacactttgttttggtatgataagtggttatgatcggtttctttt 53486680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 49926025 - 49926129
Alignment:
Q  76 taggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggagg 175  Q
    |||||||||||| |||| ||| || ||||   |||||||| ||| | |||| |||||||||||||||  ||| || ||||||||| |||||||| ||||     
T  49926025 taggttgtttgagctttttgaaaataaatatgttacagtgtcagatatgttttctcttggtgttgaggagggaggtgaggcgtggcagtggaggcggaga 49926124  T
Q  176 ttgtg 180  Q
    |||||    
T  49926125 ttgtg 49926129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 19648090 - 19647986
Alignment:
Q  76 taggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggagg 175  Q
    |||||||||||| |||| ||| || ||||   || ||||| ||| | |||| |||||||||||||||  ||| || ||||||||| |||||||| ||||     
T  19648090 taggttgtttgagctttttgataataaatatgtttcagtgtcagatatgttttctcttggtgttgaggagggaggtgaggcgtggcagtggaggcggaga 19647991  T
Q  176 ttgtg 180  Q
    |||||    
T  19647990 ttgtg 19647986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 25135716 - 25135685
Alignment:
Q  146 ggtggggaggcgtggaagtggaggaggaggtt 177  Q
    ||||| ||||||||||||||||||||||||||    
T  25135716 ggtggagaggcgtggaagtggaggaggaggtt 25135685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 2564 - 2736
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||| ||||| |||||||||| |||||||||||  || |||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  2564 gatggttcagacacgttgttctggtatgataagtggttaggatcagtctctttttgtgagcggtttcctaggttgtttgatgtttctgagaacaaatcca 2663  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2664 tttcagtggcaggtttgttctctcttggtgttgagcggggtggggaggcgtgggagtggaggaggaggttgtg 2736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 4077724 - 4077552
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||    
T  4077724 gatggttcagacaccttgttttggtatgataagtggttaggatcggttcctttttgtgagcggtttcctcggttgtttgatctttctgagaacaaatcca 4077625  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||| |||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4077624 ttacggtggcgtgtttgttctctcttggtgttgagcagggtggggaggcgtggaagtggaggaggaggttgtg 4077552  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 34232148 - 34231976
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||||||||| || | ||||||| |||| ||||| |||||||||||||| || ||||    
T  34232148 gatggttctgacactttgttttggtatgataagtggttaggatcggtttctttgtgtgagcggttttctagattgttcgatctttctgagaataagtcca 34232049  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    || | |||||||   ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  34232048 tttcggtggcagacttgttctctcttggtgttgatcggggtggggaggcgttgaagtggagtaggaggttgtg 34231976  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 7458439 - 7458534
Alignment:
Q  85 tgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||||||||||||||||||||||||| ||||||||  |||||   ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  7458439 tgatctttctgagaacaaatccattacggtggcaggcttgttcatgcttggtgttgagcagggtggggaggcttggaagtggaggaggaggttgtg 7458534  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 25924456 - 25924347
Alignment:
Q  71 tttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggagga 170  Q
    |||| |||||||||||| |||| ||| || ||||   |||||||| ||| | |||| |||||||||||||||  ||| || ||||||||| ||||||||     
T  25924456 tttcgtaggttgtttgagctttttgaaaataaatatgttacagtgtcagatatgttttctcttggtgttgaggagggaggtgaggcgtggcagtggaggc 25924357  T
Q  171 ggaggttgtg 180  Q
    |||| |||||    
T  25924356 ggagtttgtg 25924347  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 8457001 - 8457033
Alignment:
Q  145 gggtggggaggcgtggaagtggaggaggaggtt 177  Q
    |||||| ||||||||||||||||||||||||||    
T  8457001 gggtggtgaggcgtggaagtggaggaggaggtt 8457033  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 18815218 - 18815249
Alignment:
Q  146 ggtggggaggcgtggaagtggaggaggaggtt 177  Q
    ||||| ||||||||||||||||||||||||||    
T  18815218 ggtggtgaggcgtggaagtggaggaggaggtt 18815249  T

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Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 179
Target Start/End: Original strand, 40682099 - 40682126
Alignment:
Q  152 gaggcgtggaagtggaggaggaggttgt 179  Q
    ||||||||||||||||||||||||||||    
T  40682099 gaggcgtggaagtggaggaggaggttgt 40682126  T

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Target: chr8 (Bit Score: 122; Significance: 7e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 23680592 - 23680439
Alignment:
Q  27 tttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtctgtt 126  Q
    |||||||||||||||||||||||| |||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  23680592 tttggtatgataggtggttaggatcggtttcttttcgtgagcggtttcctaggttgttcgatctttctgagaacaaatccattttagtggcaggtctgtt 23680493  T
Q  127 ctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23680492 ctctcttggtgttgagcggggtggggaggcgtggaagtggaggagggggttgtg 23680439  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 17659280 - 17659108
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    ||||||||||| ||||||||||||| ||||||||||||||| | ||||||||| || | | ||||||||||||||| |||||||| ||||||||||| ||    
T  17659280 gatggttcagatactttgttttggtttgataggtggttaggttcggtttctttctgtgagaggtttcctaggttgtatgatctttttgagaacaaataca 17659181  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17659180 ttacagtggcaggtctattctctcttggtgtggagcggggtggggaggcgtggaagtggaggaggaggttgtg 17659108  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 45255520 - 45255689
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||| || ||||||||||||||||||| |||||||||||  ||||| ||| | | | |||| |||||||||||||||||||||||||| |||||||    
T  45255520 gatggttccgatactttgttttggtatgataagtggttaggatcagtttcgtttcgtgagaggttccctaggttgtttgatctttctgagaataaatcca 45255619  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggtt 177  Q
    || | ||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  45255620 tttcggtggcaggtttgttctctcttggtgttgagcagaggggggaggcgtggaagtggaggaggaggtt 45255689  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 36157588 - 36157434
Alignment:
Q  24 tgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccattacagtggcaggtct 123  Q
    ||||||||| ||||| ||||||||||| || | |||| || | | ||| |||| | ||||||| |||||| |||||||||| ||||| ||||||   | |    
T  36157588 tgttttggtttgataagtggttaggatcggctactttgtgtgtgaggtatcctcgattgtttgctctttccgagaacaaattcattatagtggcgaattt 36157489  T
Q  124 gttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||| ||| ||||| |||||| ||  |||||||||||||||||||||||||| |||||    
T  36157488 gttttcttttggttttgagcagg--ggggaggcgtggaagtggaggaggagtttgtg 36157434  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7452802 - 7452761
Alignment:
Q  7 agatggttcagacactttgttttggtatgataggtggttagg 48  Q
    ||||||||| || || ||||||||||||||||||||||||||    
T  7452802 agatggttctgatacgttgttttggtatgataggtggttagg 7452761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 29681621 - 29681654
Alignment:
Q  146 ggtggggaggcgtggaagtggaggaggaggttgt 179  Q
    ||||||||||||||||||| ||||||||||||||    
T  29681621 ggtggggaggcgtggaagtagaggaggaggttgt 29681654  T

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Target: scaffold0179 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 7981 - 7805
Alignment:
Q  8 gatggttcagacactttgttttggtatgatag----gtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaa 103  Q
    ||||||||||||||||||||||||| |||||     ||||||||| | ||||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  7981 gatggttcagacactttgttttggtttgataattaagtggttagggtcggtttctttgtgtgagcggtttcctaggttgtttgatcttgctgagaacaaa 7882  T
Q  104 tccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    || ||||| ||||||||  | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  7881 tctattacggtggcaggatttttctctcttggtgttgagcagggtggggaggcgtggaggtggaggaggaggttgtg 7805  T

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Target: scaffold0179; HSP #2
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 12915 - 12739
Alignment:
Q  8 gatggttcagacactttgttttggtatgatag----gtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaa 103  Q
    ||||||||||||||||||||||||| |||||     ||||||||| | ||||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  12915 gatggttcagacactttgttttggtttgataattaagtggttagggtcggtttctttgtgtgagcggtttcctaggttgtttgatcttgctgagaacaaa 12816  T
Q  104 tccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    || ||||| ||||||||  | ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  12815 tctattacggtggcaggatttttctctcttggtgttgagcagggtggggaggcgtggaggtggtggaggaggttgtg 12739  T

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Target: scaffold0007 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 182564 - 182417
Alignment:
Q  8 gatggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatcca 107  Q
    |||||||||||||| ||||||||||| || | ||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  182564 gatggttcagacacgttgttttggtacgaaaagtggttaggatcggtctctttttgtgagcggtttcctaggttgtttgatctttctgagaacaaatcca 182465  T
Q  108 ttacagtggcaggtctgttctctcttggtgttgagcggggtggggagg 155  Q
    || | || |||||| ||||||||||||||||||||||||||| |||||    
T  182464 tttcggtcgcaggtttgttctctcttggtgttgagcggggtgtggagg 182417  T

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Target: chr2 (Bit Score: 92; Significance: 6e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 1380530 - 1380359
Alignment:
Q  9 atggttcagacactttgttttggtatgataggtggttaggattggtttctttttgcgggcggtttcctaggttgtttgatctttctgagaacaaatccat 108  Q
    |||||||||||||||||||||||| |||||  |||||||| | ||| |||||||| | |||||||||||||||||| ||||| |||| |||||||| | |    
T  1380530 atggttcagacactttgttttggtttgataaatggttagggtcggtgtctttttgtgagcggtttcctaggttgttcgatctctctgtgaacaaattctt 1380431  T
Q  109 tacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    | | ||||||| | |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  1380430 ttcggtggcagatttgttttctcttggtgtagagtggggtggggaggcgtggaagtggaggaggaggttgtg 1380359  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 2999554 - 2999611
Alignment:
Q  123 tgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2999554 tgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggaggttgtg 2999611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 11028246 - 11028153
Alignment:
Q  81 tgtttgatctttctgagaacaaatccattacagtggcaggtctgttctctcttggtgttgagcggggtggggaggcgtggaagtggaggaggag 174  Q
    |||||| |||||| |||||||||| ||||||| ||||   | |||| ||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  11028246 tgtttgctctttccgagaacaaattcattacaatggcgaatttgttttctcttggttttgagcagggaggggaggcgtggaagtggaggaggag 11028153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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