View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5628-Insertion-2 (Length: 935)
Name: NF5628-Insertion-2
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 679
Target Start/End: Original strand, 31978303 - 31978973
Alignment:
| Q |
8 |
gcatataagttctttttatcaatcaaagtagtttaacactatgatnnnnnnngaggaaatattaccatgcaatattattgtttaaagaataaagataaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31978303 |
gcatataagttctttttatcaatcaaagtagtttaacactatgataaaaaaagaggaaatattaccatgcaatattattgtttaaagaataaagataaaa |
31978402 |
T |
|
| Q |
108 |
tatatatttcaatattaaacacgtcaaaaatgtttgcaacaaagaaaaacctcaaaagtgtttgtttagttaattcaattaaaaaacatattgtgatctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31978403 |
tatatatttcaatattaaacacgtcaaaaatgtttgcaacaaagaaaaacctcaaaagtgtttgttttgttaattcaattaaaaaacatattgtgatctt |
31978502 |
T |
|
| Q |
208 |
cacactcaccaaatattataagaatagatacgagcaactccttttatatgagtgtcttatctaagaaaaaataaacnnnnnnnnnnnnnnnnnnnnnnct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31978503 |
cacactcaccaaatattataagaatagatacgagcaattccttttatatgagtgtcttatctaagaaaaaataaacttttttttattttttattttt-ct |
31978601 |
T |
|
| Q |
308 |
ataaaggtaaagcaatggatttttcttgattcaattagacattgccctactttcggtttacagtcaatgtacacatatgcccaagtcgaatgctttttct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31978602 |
ataaaggtaaagcaatggatttttcttgattcaattagacattgccctactttcggtttacagtcaatgtacacatatgcccaagtcaaatgctttttct |
31978701 |
T |
|
| Q |
408 |
tatttctaatctcaactttaaatcagaatattcttttcaaagcaaatagccaaatagacatatctaggttctagcaggacaaatgaactatcaagttggt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
31978702 |
tatttctaatctcaactttaaatcagaatattcttttcaaagcaaatagccaaatagacatatctaggctctagcagaacaaatgaactatcaagttggt |
31978801 |
T |
|
| Q |
508 |
tcacggaactatcacgtggtacagggacccatattcttgtccataatcaatcaattattcaatttagatctccattgtcacccatattaggccaaatttc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31978802 |
tcacggaactatcacgtggtacagggacccatattcttgtccataatcaatcaattattcaatttagatctccattgtcacccatattaggccaaatttc |
31978901 |
T |
|
| Q |
608 |
cgtaatgaatgcaactggttccattccatatctaagtaacaagaaaccaagttgacaggttcaatttccatc |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31978902 |
cgtaatgaatgcaactggttccattccatatctaagtaacaagaaaccaagttgacaggttcaatttccatc |
31978973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 750 - 935
Target Start/End: Original strand, 31979051 - 31979230
Alignment:
| Q |
750 |
atgactcaaaaaattattcgaatagatgcatacaagttcaaattcaaaattatttattactagttgaattgtgtgatatatggaataatgtaatgtagtg |
849 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31979051 |
atgactcaaaaaattattccaatagatgcatacaagttcaaattcaaaa----ttattactagttgaat--tgtgatatatggaataatgtaatgtagtg |
31979144 |
T |
|
| Q |
850 |
taactccacatcatttattataccaaaagaattagagagggagctgattggac-aaatatgccacaaaacttcacatttcacagtca |
935 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
31979145 |
taactccacatca-ttattataccaaaagaattagagagggagctgattggacaaaatatgccacaaaacttcacatttctcagtca |
31979230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 751
Target Start/End: Original strand, 31978970 - 31979023
Alignment:
| Q |
699 |
catcgccatgctcaattgttt-cctacataaattggtgcaagataagaaggaat |
751 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
31978970 |
catcgccatgctcaattgttttccaacataaattggtgcaagataagaaggaat |
31979023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University