View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628-Insertion-3 (Length: 920)
Name: NF5628-Insertion-3
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628-Insertion-3 |
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| [»] scaffold0026 (3 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 340 - 920
Target Start/End: Complemental strand, 101704 - 101123
Alignment:
| Q |
340 |
gtgtccaaagtattgtgaccacacaagaattgctcgtgatctattaaataatattttatggttttgttagagatgtggtgtataatcttttggtggatat |
439 |
Q |
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| T |
101704 |
gtgtccaaagtattgtgaccacacaagaattgctcgtgatctattaaataatattttatggttttgttggagatgaggcgtataatcttttggtggatat |
101605 |
T |
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| Q |
440 |
gaatcattggtttgttgttgctctcaacgcttctatggactctccaataaatgatatcagagccctgattcaatcttcgtaagttttcttgacattgtag |
539 |
Q |
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| T |
101604 |
gaatcattggtttgttgttgctctcaacgcttctacagactctccaataaatgatatcagagccctgattcaatctttgtaagttttcttgacattgtag |
101505 |
T |
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| Q |
540 |
tcaagaggtgtgttccggtgtttttaacgacaatgcaagtgtaggatatgggaaaatacaattgagagagattgttcaagtaagtgtgagtggttagtct |
639 |
Q |
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| T |
101504 |
tcaagaggtgtgttccggtgtttttaacgacaatgcaagtgtaggatatgggaaaatacaattgagagagattgttgaagtaagtgtgagtggctagtct |
101405 |
T |
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| Q |
640 |
aacatcatctattataaaagttggatatattagagatggacttatattctgaatgccttaaaagaaattgaagatgatgctcatgaaccattggtacgta |
739 |
Q |
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| T |
101404 |
aacatcgtctattataaaagttggatatattagagatggacttatattctgaatgccttaaaagaaattgaagatgatactcatgaatcattggtacgtt |
101305 |
T |
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| Q |
740 |
gttgctcccacacacgctct-cctgatcaattaagttgcaggaaaatgaattaggaaattcaattatatttaaaatttaaaattacttatcaaattggca |
838 |
Q |
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| T |
101304 |
gttgctcccacacacgctctcccttatcaattaagttgcaggaaaatgaattaggaaattcaattatatttaaaatttaaaattacttatcaaattggca |
101205 |
T |
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| Q |
839 |
ctgtccagttgatcatgagcttctttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttt |
920 |
Q |
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| T |
101204 |
ctgtccagttgatcatgagcttctttcatttcagctttgatggcattggccagccgatcatgagcttctgcccatgcatttt |
101123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 102080 - 101861
Alignment:
| Q |
8 |
gttttatggtatatagtgagattcattcattgattaaaggtggagttggcccttcatgccattggggagttattctgcaatttgtcagcttgtgcttttt |
107 |
Q |
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| T |
102080 |
gttttatggtatatagtgagattcattcattgattaaagatggagttggcccttcatgccattggggagttattctgcaatttgtcagcttgtgcttttt |
101981 |
T |
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| Q |
108 |
ccaccaaattaggagtattatatttcttcaaattttacatacactaccatatattttggttcaagtgtgattagttagttctaaattgactatgacaatg |
207 |
Q |
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| T |
101980 |
ccaccaaattaggagtattatatttcttcaaattttacatacactaccatatattttggttcaagtgtgattagttagttctaaattgactatgacaatg |
101881 |
T |
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| Q |
208 |
aatgagttaaatagttgata |
227 |
Q |
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| T |
101880 |
aatgagttaaatagttgata |
101861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 856 - 920
Target Start/End: Complemental strand, 103330 - 103266
Alignment:
| Q |
856 |
agcttctttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttt |
920 |
Q |
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| T |
103330 |
agcttttttcatttcagctttgatggcattggcgagttgatcatgagcttctccccatgcatttt |
103266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 2e-55; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 340 - 512
Target Start/End: Original strand, 25848630 - 25848804
Alignment:
| Q |
340 |
gtgtccaaagtattgtgaccacacaagaattgctcgtgatctat-taaataatattttatggttttg-ttagagatgtggtgtataatcttttggtggat |
437 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
25848630 |
gtgtccaaagtattgtgaccacacaagaattgctcctaatctatataaatgatatcttatggttttggttagagatgtggtgtataatcttttggtggtt |
25848729 |
T |
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| Q |
438 |
atgaatcattggtttgttgttgctctcaacgcttctatggactctccaataaatgatatcagagccctgattcaa |
512 |
Q |
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| T |
25848730 |
atgaatcattggtttgttgttgctcctgacgcttctatgaactcttcaataaatgatatcagagctttgattcaa |
25848804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 787 - 920
Target Start/End: Original strand, 25849161 - 25849294
Alignment:
| Q |
787 |
aattaggaaattcaattatatttaaaatttaaaattacttatcaaattggcactgtccagttgatcatgagcttctttcatttcagctttgatggcattg |
886 |
Q |
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| T |
25849161 |
aattagaacattcaattatatttaaaatttaaaattacttatcaaattggcattgtccatctgatcatgagcttctttcatttcaactttgatggcattg |
25849260 |
T |
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| Q |
887 |
gccagctgatcatgagcttctgcccatgcatttt |
920 |
Q |
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| T |
25849261 |
gcaagctgatcatgagcttctgcccatgcatttt |
25849294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 25848193 - 25848326
Alignment:
| Q |
5 |
acagtttt-atggtatatagtgagattcattcattgattaaaggtggagttggcccttcatgccattggggagttattctgcaatttgtcagcttgtgct |
103 |
Q |
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| T |
25848193 |
acagttttcatggtatataatgagattcattcattgattaaagatggagttggcccttcatgccaatggggagttattttgcagtttgtcagcttgtgct |
25848292 |
T |
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| Q |
104 |
ttttccaccaaattaggagtattatatttcttca |
137 |
Q |
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| T |
25848293 |
ttttccaacaaattaggagtattatatttcttca |
25848326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 507 - 701
Target Start/End: Original strand, 25848836 - 25849033
Alignment:
| Q |
507 |
attcaatcttcgtaagttttcttgacattgtagtcaagaggtgtgttccggtgtttttaacgacaatgcaagtgtaggatatgggaaaatacaattgaga |
606 |
Q |
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| T |
25848836 |
attcaatctttgtaagttttcttgacattatagtcaagaggtgtgttccgttgtttttaacagcaatgcaagtataggatacgagagaatacaattgaga |
25848935 |
T |
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| Q |
607 |
gagat--tgttcaagt-aagtgtgagtggttagtctaacatcatctattataaaagttggatatattagagatggacttatattctgaatgccttaaa |
701 |
Q |
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| T |
25848936 |
gagagactattgaggtcaagtgtgagtggttagtctaacatcgactataataaaagttggatacaccagagatggacttatattcttaatgccttaaa |
25849033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 25848375 - 25848463
Alignment:
| Q |
140 |
ttttacatacactaccatatattttggttc-aagtgtgattagttagttctaaattgactatgacaatgaatgagttaaatagttgata |
227 |
Q |
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| T |
25848375 |
ttttacatacactaccatatattttggttctaagtgtgattaattagttctgaattgactatgacaatgaatgagttaaatagttgata |
25848463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 862 - 920
Target Start/End: Original strand, 25847178 - 25847236
Alignment:
| Q |
862 |
tttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttt |
920 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
25847178 |
tttcatttcagctttgatggcattggccagttgatcatgggcttctccccatgcatttt |
25847236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 862 - 918
Target Start/End: Original strand, 25844918 - 25844974
Alignment:
| Q |
862 |
tttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatt |
918 |
Q |
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| T |
25844918 |
tttcatttcagatttgattgcattgaccaactgatcataagcttctccccatgcatt |
25844974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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