View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5628-Insertion-5 (Length: 793)

Name: NF5628-Insertion-5
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5628-Insertion-5
NF5628-Insertion-5
[»] chr8 (2 HSPs)
chr8 (408-793)||(10485832-10486217)
chr8 (247-318)||(33863577-33863648)
[»] chr7 (3 HSPs)
chr7 (407-736)||(42375970-42376298)
chr7 (734-793)||(42375096-42375155)
chr7 (8-169)||(11673073-11673235)
[»] chr5 (6 HSPs)
chr5 (8-364)||(18915479-18915832)
chr5 (247-326)||(25345980-25346059)
chr5 (245-318)||(6775579-6775652)
chr5 (245-318)||(17491345-17491418)
chr5 (246-318)||(6784681-6784753)
chr5 (248-318)||(34367077-34367147)
[»] chr4 (3 HSPs)
chr4 (247-323)||(55048399-55048475)
chr4 (247-325)||(41128258-41128336)
chr4 (242-318)||(32116298-32116374)
[»] chr1 (1 HSPs)
chr1 (245-318)||(29579117-29579190)
[»] chr3 (2 HSPs)
chr3 (246-318)||(33161718-33161790)
chr3 (247-318)||(41876081-41876152)
[»] chr2 (2 HSPs)
chr2 (246-318)||(7962257-7962329)
chr2 (246-318)||(12793901-12793973)


Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 408 - 793
Target Start/End: Original strand, 10485832 - 10486217
Alignment:
Q  408 tagggctggacaaaaaagctccgctcgacccaatccgcccggtccgaaatacccgttgacgtgcgggtctgatgaaacgggttggacggtttatacgggt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  10485832 tagggctggacaaaaaagctccgctcgacccaatccgcccggtccgaaatacccgttgaagtgcgggtcggatgaaacgggttggacggtttatacggat 10485931  T
Q  508 gaacaaactcggttaatcaaggcttgtaacagtcggttgcgggtggaatacttgaatccttcggaaaccgaacctgtccgtttattattactccatatgt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10485932 gaacaaactcggttaatcaaggcttgtaacagtcggttgcgggtggaatacttgaatccttcggaaaccgaacccgtccgtttattattactccatatgt 10486031  T
Q  608 atgatataatttcacgtggcttaatttaacatgtacagagagctttgactgccaactgccaagtccaatcaaataaaagttgtacacagtttgtcagctt 707  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10486032 atgatataatttcacgtggctt-acttaacatgtacagagagctttgactgccaactgccaagtccaatcaaataaaagttgtacacagtttgtcagctt 10486130  T
Q  708 atcacctaaacaagtggacacaacatttaatttgtttattttgagagattccatggttctttactccaag-tttccaacattaccct 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10486131 atcacctaaacaagtggacacaacatttaatttgtttattttgagagattccatggttctttactccaagttttccaacattaccct 10486217  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 33863577 - 33863648
Alignment:
Q  247 ggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33863577 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33863648  T

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Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 407 - 736
Target Start/End: Complemental strand, 42376298 - 42375970
Alignment:
Q  407 gtagggctggacaaaaaagctccgctcgacccaatccgcccggtccgaaatacccgttgacgtgcgggtctgatgaaacgggttggacggtttatacggg 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42376298 gtagggctggacaaaaaagctccgctcgacccaatccgcccggtccgaaatacccgttgacgtgcgggtcggatgaaacgggttggacggtttatacggg 42376199  T
Q  507 tgaacaaactcggttaatcaaggcttgtaacagtcggttgcgggtggaatacttgaatccttcggaaaccgaacctgtccgtttattattactccatatg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42376198 tgaacaaactcggttaatcaaggcttgtaacagtcggttgcgggtggaatacttgaatccttcggaaaccgaacccgtccgtttattattactccatatg 42376099  T
Q  607 tatgatataatttcacgtggcttaatttaacatgtacagagagctttgactgccaactgccaagtccaatcaaataaaagttgtacacagtttgtcagct 706  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42376098 tatgatataatttcacgtggctt-acttaacatgtacagagagctttgactgccaactgccaagtccaatcaaataaaagttgtacacagtttgtcagct 42376000  T
Q  707 tatcacctaaacaagtggacacaacattta 736  Q
    ||||||||||||||||||||||||||||||    
T  42375999 tatcacctaaacaagtggacacaacattta 42375970  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 734 - 793
Target Start/End: Complemental strand, 42375155 - 42375096
Alignment:
Q  734 ttaatttgtttattttgagagattccatggttctttactccaagtttccaacattaccct 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375155 ttaatttgtttattttgagagattccatggttctttactccaagtttccaacattaccct 42375096  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 11673235 - 11673073
Alignment:
Q  8 gttagaattaggcccaaattgaattctggaaattgcatcaccgattggaattgactgtatctttgatttcgatgaactattt-ttgcgttcattgttttg 106  Q
    ||||||||||||| ||||||||||| || |||| || |||| |||||||||  ||  | |||  |||||| ||||  || || ||||||||||||||||     
T  11673235 gttagaattaggcgcaaattgaattatgaaaatagcgtcactgattggaatcaacaatttctacgatttcaatgagatacttcttgcgttcattgtttt- 11673137  T
Q  107 ttgcagtgaacaatgttgttgtgatttgaatttgaaataatgt-gttcttcgcggtttgtgttt 169  Q
    |||||||||| | ||||| |||||||||||||||||| ||||| ||||||| ||||||||||||    
T  11673136 ttgcagtgaatagtgttgctgtgatttgaatttgaaacaatgtagttcttcacggtttgtgttt 11673073  T

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Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 18915479 - 18915832
Alignment:
Q  8 gttagaattaggcccaaattgaattctggaaattgcatcaccgattggaattgactgtatctttgatttcgatgaactattttt-gcgttcattgttttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | ||||||| || |     
T  18915479 gttagaattaggcccaaattgaattctggaaattgcatcaccgattggaattgacagtatcttcgatttcgatgagctattttttgtgttcatttttgt- 18915577  T
Q  107 ttgcagtgaacaatgttgttgtgatttgaatttgaaataatgtgttcttcgcggtttgtgtttcnnnnnnnnattgtgttttgtatatggaagttttatg 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  18915578 ttgcagtgaacaatgttgttgtgatttgaatttgaaacaatgtgttcttcgcggtttgtgttt----tttttattgtgttttgtatatggaagttttatg 18915673  T
Q  207 cgcgaataattaagtttgtgttgtacggataataccatgtggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattc 306  Q
    |||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  18915674 cgcagataattaagtttgtgttgtacggataacatcatgtggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattc 18915773  T
Q  307 acgtcgggttcaattcccttggaaatccacttc-ttcttttttattttgttcgatttta 364  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  18915774 acgtcgggttcaattcccttggaaatccacatcttttttttttattttgttcgatttta 18915832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 25345980 - 25346059
Alignment:
Q  247 ggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttcaattccctt 326  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||| |||||||||||||||||||    
T  25345980 ggatccgtggcgcaatggtagcgcgtctgactccagatcaaaaggttgcgtgtttgattctcgtcgggttcaattccctt 25346059  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 6775652 - 6775579
Alignment:
Q  245 gtggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  6775652 gtggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6775579  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 17491345 - 17491418
Alignment:
Q  245 gtggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  17491345 gtggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 17491418  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 6784753 - 6784681
Alignment:
Q  246 tggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  6784753 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6784681  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 34367147 - 34367077
Alignment:
Q  248 gatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||    
T  34367147 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacatcaggttca 34367077  T

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Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 55048475 - 55048399
Alignment:
Q  247 ggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttcaattcc 323  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  55048475 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttcaattcc 55048399  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 41128336 - 41128258
Alignment:
Q  247 ggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttcaattccct 325  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  41128336 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttcaaatccct 41128258  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 32116298 - 32116374
Alignment:
Q  242 catgtggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  32116298 catgtggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 32116374  T

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Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 29579190 - 29579117
Alignment:
Q  245 gtggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  29579190 gtggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 29579117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 33161718 - 33161790
Alignment:
Q  246 tggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33161718 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 41876152 - 41876081
Alignment:
Q  247 ggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||    
T  41876152 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcatgtcaggttca 41876081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 7962329 - 7962257
Alignment:
Q  246 tggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  7962329 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 7962257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 12793901 - 12793973
Alignment:
Q  246 tggatccgtggcgcaatggtagcgcgtctgactccagattagaaggttgtgtgttcgattcacgtcgggttca 318  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  12793901 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 12793973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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