View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628-Insertion-7 (Length: 683)
Name: NF5628-Insertion-7
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 108 - 514
Target Start/End: Complemental strand, 52161362 - 52160941
Alignment:
| Q |
108 |
agattaggaaattggtttgtgttgcagcttcaacttggagttgatgaaagctataatttgtttatttcaaaagctacaggttctgggaaagtcacaattg |
207 |
Q |
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| T |
52161362 |
agattaggaaattggtttgtgttgcagcttcaacttggagtggatgaaagctataatttgtttatttcaaaagctacaggttctgggaaagtcacaattg |
52161263 |
T |
|
| Q |
208 |
agnnnnnnnnnnnnnnnnnnnnnntgacaatcatttgttgttgaattctaatatccgatgatgtttttacatgttgttgtgtgaatttcaagtgtttatg |
307 |
Q |
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| T |
52161262 |
aggtttggttttgttttgtttttgtgacaatcatttgttgttgaattctaatatccgatgatgtttttatatgttgttgtgtgaatttcaagtgtttacg |
52161163 |
T |
|
| Q |
308 |
gtccccttttgttgttgtaatttcttttttataattatttatgttttactcaatagcatacttttgatgtgtaagtatca---------------agaat |
392 |
Q |
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| T |
52161162 |
gtccccttttgttgttgtaatttcttttttataattatttatgttttattcaatagcatacttttgatgtgtaagtatcaagaacaagtcaatcaagaaa |
52161063 |
T |
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| Q |
393 |
ttgttgattgatgtgttctgttttggggtcaaccaaatttcttgaaattgacttgttttcttttgcgttgtgtttcatttcttattggtggaaattggaa |
492 |
Q |
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| T |
52161062 |
ttgttgattgatgtgttctgttttggggtcaaccaaatttcttgaaattgacttgttttcttttgcgttgtgtttcatttcttattggtggaaattggaa |
52160963 |
T |
|
| Q |
493 |
tgaccgaaacaaataaattgga |
514 |
Q |
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| T |
52160962 |
tgaccgaaacaaataaattgga |
52160941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 550 - 672
Target Start/End: Complemental strand, 52160903 - 52160783
Alignment:
| Q |
550 |
ggaatgactgaaacaaataatatggcatgatcgttagtaattttgtgaattttttaacgcaggcaaatactgcttttggtgcgtttgcgggggattagag |
649 |
Q |
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| T |
52160903 |
ggaatgactgaaacaaataatatggcatgatcgttagtaattttgtgaattttttaacgcaggcaaatactgtttttggtgcg-ttgc-ggggattagag |
52160806 |
T |
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| Q |
650 |
gtatgtgtaaaatttgcaactca |
672 |
Q |
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| T |
52160805 |
gtatgtgtaaaatttgcaactca |
52160783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 52161462 - 52161412
Alignment:
| Q |
8 |
gttacaaaattgaatattgttgttcattccaaaaatgaagaggtgggttac |
58 |
Q |
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| T |
52161462 |
gttacaaaattgaatattgttgttcattccaaaaatgaagaggtgggttac |
52161412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 3226553 - 3226460
Alignment:
| Q |
116 |
aaattggtttgtgttgcagcttcaacttggagttgatgaaagctataatttgtttatttcaaaagctacaggttctgggaaagtcacaattgag |
209 |
Q |
| |
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|||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||| || || |||| ||||||||| | ||||||| |
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| T |
3226553 |
aaattgatttgtgttgcagcttcaccttgaagtggatgaaagctataatttgtttgtttcaaaggccactggttttgggaaagtgataattgag |
3226460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3226661 - 3226611
Alignment:
| Q |
8 |
gttacaaaattgaatattgttgttcattccaaaaatgaagaggtgggttac |
58 |
Q |
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| T |
3226661 |
gttacaaaattgaatatttttgttcattctaaaagtgaagaggtgagttac |
3226611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 3226387 - 3226348
Alignment:
| Q |
281 |
ttgttgtgtgaatttcaagtgtttatggtccccttttgtt |
320 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| |
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| T |
3226387 |
ttgttgtgtgaatttcaagtgtttgttgtccccttttgtt |
3226348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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