View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628-Insertion-9 (Length: 577)
Name: NF5628-Insertion-9
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 42126289 - 42126857
Alignment:
| Q |
8 |
aaaacaaatttaaaagttttgcatggtattggaatataaaatgttttgctgcttggaactaacctctttaacattattaagctttgcagttttaagaaca |
107 |
Q |
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| T |
42126289 |
aaaacaaatttaaaagttttgcatggtattggaatataaaatgttttggtgcttggaactaacctctttaacattattaagctttgcagttttaagaaca |
42126388 |
T |
|
| Q |
108 |
tgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcctttttgaataacatcataaggtccaatcgaagaatttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42126389 |
tgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcctttttgaataacagcataaggtccaatcgaagaatttc |
42126488 |
T |
|
| Q |
208 |
ggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaac |
307 |
Q |
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| T |
42126489 |
ggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaac |
42126588 |
T |
|
| Q |
308 |
tagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126589 |
tagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttg |
42126688 |
T |
|
| Q |
408 |
aggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagag |
507 |
Q |
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| T |
42126689 |
aggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagag |
42126788 |
T |
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| Q |
508 |
catagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagctatgcaaagga |
576 |
Q |
| |
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| T |
42126789 |
cgtagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaagga |
42126857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 159 - 574
Target Start/End: Original strand, 24929735 - 24930150
Alignment:
| Q |
159 |
ataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggc |
258 |
Q |
| |
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|||| |||||| ||||||| |||| ||||||||||||| |||||| | |||||| | || ||||||||||| ||||||||||| ||||||||||||| |
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| T |
24929735 |
ataacacttccgttttgaacaacagcataaggtccaatagaagaacattttccaatcttaatgggatggagacttagaattccattctttacctcatggc |
24929834 |
T |
|
| Q |
259 |
tttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaat |
358 |
Q |
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| T |
24929835 |
tttgaaccaaaacaccttctgcaacgacagcttcatctccgattgacaccagagttgggtccgtgatgtcaactgtatcaagcagaactgaggatccaat |
24929934 |
T |
|
| Q |
359 |
tcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcc |
458 |
Q |
| |
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|||||| || | || ||||||||||| || |||||||| |||||| ||||||||||||||| |||||| || |||||||| || | ||||| |||||| |
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| T |
24929935 |
tcttgctcccaacatttcaaaccagtactttagaaacactgttcctctgaggtgtgtagccaaaactttagaggaaatttcttgagtcttatatagcgcc |
24930034 |
T |
|
| Q |
459 |
caccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcatagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatg |
558 |
Q |
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| T |
24930035 |
caccacttgacaaaatccgttgaatagatggagatgtcagaggcatgttcatagtttagccctactaaagaacttccaaacaatgaaatgcaaacgcaag |
24930134 |
T |
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| Q |
559 |
tagaagctatgcaaag |
574 |
Q |
| |
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| ||||| |||||||| |
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| T |
24930135 |
tggaagcgatgcaaag |
24930150 |
T |
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