View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5628_high_2 (Length: 422)
Name: NF5628_high_2
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 42125922 - 42126293
Alignment:
| Q |
1 |
ataaatcccaagaaaatggtatatagcatcagactcggttttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125922 |
ataaatcccaagaaaatggtatatagcatcagactcggttttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatca |
42126021 |
T |
|
| Q |
101 |
atttctgttataaatttaatatatcgtgactcgtggagaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126022 |
atttctgttataaatttaatagatcgtgactcgtggacaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgt |
42126121 |
T |
|
| Q |
201 |
atttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaacttcatgttcaaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42126122 |
atttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaatttcatgttcaaataa |
42126221 |
T |
|
| Q |
301 |
cacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaac |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126222 |
cacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaac |
42126293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
187 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
259 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||| | ||||| ||||||||| |||||||| |
|
|
| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
186 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
262 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| |||||||||| | | || ||||||||||||||||| ||||||||||| |
|
|
| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
192 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
258 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 20809087 - 20809151
Alignment:
| Q |
196 |
tgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaaca |
260 |
Q |
| |
|
||||||||||| |||||| |||| |||||| | |||| ||||||| ||||||||| |||| |||| |
|
|
| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University