View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628_high_5 (Length: 385)
Name: NF5628_high_5
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 200 - 368
Target Start/End: Complemental strand, 46688238 - 46688070
Alignment:
| Q |
200 |
aaatgaattgattcaaatatcattttaaaatttagattgaacttaacttaatcttacaagacagatttataaaatgatgcttgcttccattaataaacac |
299 |
Q |
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| T |
46688238 |
aaatgaattgattcaaatatcattttaaaatttagattgaacttcacttaatcttacaagacatatttataaaatgatgcttgcttccattaataaacac |
46688139 |
T |
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| Q |
300 |
atgttcaaattttatcccatataaatttaaatcataagacaaatttcatcctcgtataaatcatataag |
368 |
Q |
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| T |
46688138 |
atgttcaaattttatcccatataaatttaaatcataagataaatttcatcctcgtataaatcatataag |
46688070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 46688401 - 46688289
Alignment:
| Q |
98 |
tttaaccttactaaaccaactaatataaggagaaaacggtgtgccccacttataaaca---------atactcttaatataccctcattgactcaatatt |
188 |
Q |
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| T |
46688401 |
tttaaccttactaaaccagctaatataaggagaaaacagtgtgccccacttataaacattgtgtgccatactcttaatatgctctcattgactcaatatt |
46688302 |
T |
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| Q |
189 |
tgaacatctagaa |
201 |
Q |
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| T |
46688301 |
tgaacatctagaa |
46688289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 46690509 - 46690420
Alignment:
| Q |
7 |
taaattattctattgattaggttcatatatagtctcatggatcttgcacgggtaatatatacttaattaaacacacactcctcttgtttaatttaac |
103 |
Q |
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| T |
46690509 |
taaattattcaattgattaggttc-------gtctcatggatcttgcacggataatatatacttaattaaacacacactcttcttgtttaatttaac |
46690420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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