View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5628_high_6 (Length: 360)

Name: NF5628_high_6
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5628_high_6
NF5628_high_6
[»] scaffold0114 (1 HSPs)
scaffold0114 (8-249)||(38538-38779)
[»] chr3 (17 HSPs)
chr3 (8-256)||(49380831-49381079)
chr3 (8-249)||(13621835-13622076)
chr3 (37-231)||(14744079-14744273)
chr3 (143-250)||(13620917-13621024)
chr3 (150-251)||(49379697-49379798)
chr3 (70-138)||(7271533-7271601)
chr3 (67-135)||(8372555-8372623)
chr3 (70-134)||(48253043-48253107)
chr3 (70-161)||(10301757-10301848)
chr3 (96-142)||(7921611-7921657)
chr3 (96-134)||(43345429-43345467)
chr3 (74-134)||(53809439-53809499)
chr3 (37-131)||(47766859-47766954)
chr3 (70-128)||(5122429-5122487)
chr3 (70-134)||(10339931-10339995)
chr3 (167-231)||(28909641-28909705)
chr3 (81-129)||(45422118-45422166)
[»] chr2 (19 HSPs)
chr2 (8-250)||(28610019-28610261)
chr2 (37-249)||(4919825-4920037)
chr2 (37-208)||(45699568-45699739)
chr2 (147-251)||(4921074-4921178)
chr2 (143-250)||(28611264-28611371)
chr2 (135-251)||(8321247-8321363)
chr2 (70-233)||(19397544-19397707)
chr2 (145-247)||(19398814-19398916)
chr2 (70-154)||(1147842-1147926)
chr2 (170-224)||(45699523-45699577)
chr2 (167-250)||(34147133-34147216)
chr2 (144-251)||(40559122-40559229)
chr2 (183-257)||(1149240-1149314)
chr2 (144-249)||(25559280-25559385)
chr2 (144-249)||(40556938-40557043)
chr2 (117-157)||(28544941-28544981)
chr2 (67-152)||(2717717-2717803)
chr2 (70-152)||(9473991-9474073)
chr2 (81-133)||(3533579-3533631)
[»] chr1 (22 HSPs)
chr1 (13-251)||(14479397-14479635)
chr1 (18-250)||(28051495-28051726)
chr1 (37-248)||(51446749-51446960)
chr1 (143-251)||(51445586-51445694)
chr1 (143-249)||(14478264-14478370)
chr1 (70-233)||(40533543-40533706)
chr1 (143-250)||(28050318-28050425)
chr1 (37-251)||(12667181-12667395)
chr1 (96-249)||(48528862-48529015)
chr1 (151-233)||(40634711-40634793)
chr1 (70-130)||(24516448-24516508)
chr1 (70-130)||(40110594-40110654)
chr1 (167-250)||(48527531-48527614)
chr1 (167-249)||(26287820-26287902)
chr1 (81-149)||(14429849-14429917)
chr1 (170-249)||(5611724-5611803)
chr1 (167-250)||(15746802-15746885)
chr1 (81-134)||(9417050-9417103)
chr1 (72-129)||(28999954-29000011)
chr1 (81-130)||(33941431-33941480)
chr1 (81-134)||(50679774-50679827)
chr1 (183-251)||(12665787-12665855)
[»] chr4 (28 HSPs)
chr4 (8-250)||(26495119-26495361)
chr4 (8-250)||(8363266-8363508)
chr4 (8-250)||(36244644-36244886)
chr4 (8-249)||(56156933-56157174)
chr4 (37-250)||(52137423-52137636)
chr4 (143-257)||(20625516-20625630)
chr4 (143-250)||(26496321-26496428)
chr4 (143-249)||(20620137-20620243)
chr4 (143-247)||(36243519-36243623)
chr4 (143-250)||(56157508-56157615)
chr4 (37-214)||(44499890-44500067)
chr4 (81-249)||(35348795-35348963)
chr4 (67-246)||(36846496-36846674)
chr4 (151-249)||(52138815-52138912)
chr4 (81-249)||(39056423-39056591)
chr4 (74-257)||(26631162-26631345)
chr4 (37-134)||(46795934-46796032)
chr4 (70-134)||(307747-307811)
chr4 (70-129)||(41348354-41348413)
chr4 (37-237)||(669550-669751)
chr4 (70-134)||(29665516-29665580)
chr4 (142-249)||(40723225-40723333)
chr4 (167-250)||(1521230-1521313)
chr4 (167-234)||(2162622-2162689)
chr4 (37-131)||(47667291-47667386)
chr4 (144-206)||(37106263-37106325)
chr4 (70-134)||(38417663-38417727)
chr4 (82-134)||(38554039-38554091)
[»] chr5 (27 HSPs)
chr5 (8-251)||(11796565-11796807)
chr5 (143-249)||(23325910-23326016)
chr5 (143-250)||(23333979-23334086)
chr5 (70-246)||(10736877-10737053)
chr5 (143-250)||(11797545-11797652)
chr5 (70-161)||(9219262-9219353)
chr5 (70-155)||(10978218-10978303)
chr5 (75-250)||(13519470-13519649)
chr5 (67-134)||(8188139-8188206)
chr5 (101-249)||(4124754-4124903)
chr5 (67-138)||(1273195-1273266)
chr5 (143-250)||(10735760-10735867)
chr5 (68-130)||(5975870-5975932)
chr5 (143-213)||(13520794-13520864)
chr5 (96-134)||(15857586-15857624)
chr5 (144-250)||(41143237-41143343)
chr5 (143-249)||(41144530-41144636)
chr5 (81-134)||(18695600-18695653)
chr5 (67-138)||(22812325-22812397)
chr5 (129-249)||(42642008-42642128)
chr5 (168-251)||(4127290-4127373)
chr5 (99-134)||(5384317-5384352)
chr5 (183-250)||(35081489-35081556)
chr5 (97-134)||(224559-224596)
chr5 (81-134)||(21389096-21389149)
chr5 (179-251)||(8523794-8523866)
chr5 (167-251)||(28702565-28702649)
[»] chr7 (24 HSPs)
chr7 (8-249)||(41329347-41329588)
chr7 (37-249)||(32653461-32653673)
chr7 (37-231)||(35296724-35296918)
chr7 (143-250)||(41328216-41328323)
chr7 (143-250)||(39981314-39981421)
chr7 (67-252)||(666721-666906)
chr7 (73-246)||(43442705-43442878)
chr7 (81-251)||(10955841-10956011)
chr7 (193-248)||(32653729-32653784)
chr7 (87-205)||(44376644-44376762)
chr7 (87-205)||(44385511-44385629)
chr7 (96-154)||(26146672-26146730)
chr7 (37-134)||(28326298-28326396)
chr7 (67-130)||(29589206-29589269)
chr7 (37-134)||(41515106-41515204)
chr7 (70-135)||(17288184-17288249)
chr7 (183-250)||(669440-669507)
chr7 (67-131)||(25532257-25532321)
chr7 (70-141)||(45721708-45721779)
chr7 (72-130)||(18670448-18670506)
chr7 (105-155)||(29861588-29861638)
chr7 (96-138)||(43931834-43931876)
chr7 (167-248)||(10957190-10957271)
chr7 (183-250)||(26135638-26135705)
[»] scaffold0219 (2 HSPs)
scaffold0219 (67-250)||(6892-7074)
scaffold0219 (135-258)||(8194-8317)
[»] chr8 (21 HSPs)
chr8 (63-250)||(9853564-9853751)
chr8 (143-250)||(9854891-9854998)
chr8 (70-226)||(42793720-42793876)
chr8 (70-225)||(38697178-38697333)
chr8 (70-251)||(43203219-43203400)
chr8 (37-161)||(24191463-24191587)
chr8 (74-249)||(31844366-31844541)
chr8 (37-155)||(45395924-45396042)
chr8 (168-257)||(41743652-41743741)
chr8 (143-250)||(38697865-38697972)
chr8 (70-141)||(39516439-39516510)
chr8 (183-249)||(28291293-28291359)
chr8 (167-249)||(28291401-28291483)
chr8 (70-130)||(22621076-22621136)
chr8 (37-134)||(38095-38192)
chr8 (96-134)||(16362529-16362567)
chr8 (74-140)||(36757166-36757232)
chr8 (96-133)||(34616245-34616282)
chr8 (70-134)||(7770107-7770171)
chr8 (70-134)||(7777784-7777848)
chr8 (37-129)||(35945346-35945438)
[»] chr6 (5 HSPs)
chr6 (143-249)||(11722784-11722890)
chr6 (143-217)||(21777496-21777570)
chr6 (101-148)||(138176-138223)
chr6 (101-148)||(146197-146244)
chr6 (70-138)||(18242249-18242317)
[»] scaffold2071 (1 HSPs)
scaffold2071 (167-249)||(717-799)
[»] scaffold1251 (1 HSPs)
scaffold1251 (167-250)||(1121-1204)
[»] scaffold0098 (1 HSPs)
scaffold0098 (70-130)||(42288-42348)


Alignment Details
Target: scaffold0114 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 38779 - 38538
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||    
T  38779 gagaagaagagagaagatgatagtgctggaaaaattaggtgccgacggctcactataggtataatggacatgcaatcaaacggctaatatcatataaaaa 38680  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38679 attttaatcattaaaaaactaacggaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatg 38580  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
     |||||||||||||||||| ||||||||||||||||||||||    
T  38579 gaaactcataattatttaggggaccaaatgtccaattaagcc 38538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 49380831 - 49381079
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||  |||| || ||||||||||||||||| |||||||||||||||||||||||||||    
T  49380831 gagaagaagagagaagatgatagtgctggaaaaattaggtgccgatagctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaa 49380930  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||    
T  49380931 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggtaccaaaatatgagttttacaatttataggaccaaaatg 49381030  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagccttgtttt 256  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  49381031 taaactcataattatttaggggaccaaatatccaattaagccttgtttt 49381079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 13621835 - 13622076
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||    
T  13621835 gagaagaagagagaagatgatagtgctggaaaaattaggtgccgatggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaa 13621934  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  13621935 attttaaatattaaaaaactaactgaggggatcaatttgactgacgaagcaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatg 13622034  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  13622035 taaactcataattatttaggggaccaaatgtccaattaagcc 13622076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 14744273 - 14744079
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||||||| || || || || || |||||||||||||| |||||| ||| ||| ||||||||||||| |||| ||||||||||| ||||||||      
T  14744273 aaaaattaggtgctgatggttcactatatgtataatggacatgcaatcaatcggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagat 14744174  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggac 231  Q
    ||||||||||||| ||||||||||||||| |  ||||||||||||||||||||| ||||| |||||||||||||||    |||||||||||||||    
T  14744173 gatcaatttgactaacggagcaaaaccaatgaaaccaaaatgtgagttttacaatttatgagaccaaaatgtaaaccgcgaattatttagaggac 14744079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 13621024 - 13620917
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||    
T  13621024 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttagaggaccaaatgtcaaa 13620925  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  13620924 ttaagcct 13620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 49379798 - 49379697
Alignment:
Q  150 gacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||||||||||||| | || |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  49379798 gacggagcaaaaccaagagaactaaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttagaggaccaaatgtccaattaagcc 49379699  T
Q  250 tt 251  Q
    ||    
T  49379698 tt 49379697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 7271533 - 7271601
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 138  Q
    |||||||||| ||||||| || ||| || | |||||||| |||| ||||||||||||||||||||||||    
T  7271533 aatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggagggga 7271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 8372555 - 8372623
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagg 135  Q
    |||||||||| || |||| || || | | |||||||||||||| |||||||||||||||||||||||||    
T  8372555 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggagg 8372623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 48253107 - 48253043
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| ||||||| || ||| |||| |||||||| |||| ||||||||||||||||||||    
T  48253107 aatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacggag 48253043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 10301757 - 10301848
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 161  Q
    |||||||||  ||||||| || ||| |||| |||||||| |||| |||||||||||||||| ||||  | ||| |||||| |||||||||||    
T  10301757 aatggacattcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaaactaacagaggacaccaaattgactaacggagcaaaa 10301848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 7921611 - 7921657
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaa 142  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||||    
T  7921611 atcatatcaaaaatattagacattaaaaaactaacggagaggatcaa 7921657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 43345467 - 43345429
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43345467 atcatatcaaaaatattaaacattaaaaaactaacggag 43345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 53809439 - 53809499
Alignment:
Q  74 gacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||| ||||||| || ||| || |||||||||| |||| ||||||||||||||||||||    
T  53809439 gacatgcaatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacggag 53809499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 47766859 - 47766954
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgt-aggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 131  Q
    ||||||||||||| ||||| || || | || || |||||||||| ||||||| || ||| |||| || ||||| |||| |||||||||||||||||    
T  47766859 aaaaattaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacg 47766954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 5122487 - 5122429
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaacta 128  Q
    |||||||||||||| |||| | ||| ||||||| |||||| ||| ||||||||||||||    
T  5122487 aatggacatgtaattaaacagttaaaatcatataaaaaatattagacattaaaaaacta 5122429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 10339931 - 10339995
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||  ||||||| || | | |||| |||||||| |||| ||||||||||||||||||||    
T  10339931 aatggacattcaatcaaatggttcaaatcaaatcaaaaaatttagacattaaaaaactaacggag 10339995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 28909641 - 28909705
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggac 231  Q
    ||||||||||  |||||||||  | |||||||||||||||| ||||| | ||||| |||||||||    
T  28909641 gggaccaaaacatgagttttattagttatgggaccaaaatgaaaactgaaaattaattagaggac 28909705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 45422118 - 45422166
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 129  Q
    ||||||| || |||||||||||||| ||| ||| |||||||||||||||    
T  45422118 aatcaaatggttaatatcatatcaagaatattagacattaaaaaactaa 45422166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 28610261 - 28610019
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||    
T  28610261 gagaagaagagataagatgatagtgctggaaaaattaggtgccgacggctcactataggtataatgaacatgcaatcaaacggctaatatcatatcaaaa 28610162  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  28610161 attttaaacattaaaaaactaacggatgggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggaccaaaatg 28610062  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  28610061 taaactcataattatttaggtgaccaaatgtccaattaagcct 28610019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 4920037 - 4919825
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||| ||| || || || || ||||||||||||||||| |||||||||| ||| ||||||||||||| |||| |  |||||||||||| ||||||    
T  4920037 aaaaattagatgctgatggttcactataggtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagatgttaaaaaactaatggaggg 4919938  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||| ||||||  |||||||||||||||||||||||    
T  4919937 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtggattttataatttatgggaccaaattgtaaatgcataattatttagaggaccaaat 4919838  T
Q  237 gtccaattaagcc 249  Q
    |||||||||||||    
T  4919837 gtccaattaagcc 4919825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 45699739 - 45699568
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||| ||  ||||| || || ||||||| ||||||||| |||||||| | ||| ||||||||||||| |||| | ||||||||||||| ||||||    
T  45699739 aaaaattagatgttgacggttcactataggtatgatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaatggaggg 45699640  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgt 208  Q
    | ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||    
T  45699639 ggtcaatttgactgacggagcaaaaccaaagggactaaaatgtgagttttacaatttatggaaccaaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 4921074 - 4921178
Alignment:
Q  147 actgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaa 246  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  4921074 actgacagagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttagaggaccaaatgtccaattaa 4921173  T
Q  247 gcctt 251  Q
    |||||    
T  4921174 gcctt 4921178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 28611264 - 28611371
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    |||||||||||||||||||||||  |||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  28611264 tttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 28611363  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  28611364 ttaagcct 28611371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 8321247 - 8321363
Alignment:
Q  135 gggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaa 234  Q
    |||||||||||||| ||||||||||||  || ||||| |||||||  |||||| || ||||||||||||||||||||| ||||||||||||||||| |||    
T  8321247 gggatcaatttgaccgacggagcaaaattaaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagaggatcaa 8321346  T
Q  235 atgtccaattaagcctt 251  Q
    |||||||||||| ||||    
T  8321347 atgtccaattaaacctt 8321363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 19397707 - 19397544
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    |||||||||| |||| || || ||| || ||||||||| ||||| ||||||||||| ||||||| |||| |  | ||||| |||||||||||| |  |||    
T  19397707 aatggacatgcaatccaatggttaaaattatatcaaaagttttagacattaaaaaaataacggaagggacctttatgactaacggagcaaaacgagaggg 19397608  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggacca 233  Q
    |||||||||| ||||||| || ||||||||||||||||||||||  ||||||||||| ||||||    
T  19397607 accaaaatgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttaggggacca 19397544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 19398814 - 19398916
Alignment:
Q  145 tgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaatt 244  Q
    ||||| |||||||||||| |  |||||||||||||  ||||||||| |||||||||||||||||||||   ||||||||||| | |||||| | ||||||    
T  19398814 tgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttagggaaccaaaagaccaatt 19398913  T
Q  245 aag 247  Q
    |||    
T  19398914 aag 19398916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 1147926 - 1147842
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgg 154  Q
    |||||||||| ||||  | || ||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  1147926 aatggacatgcaatcggatggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacgg 1147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 45699577 - 45699523
Alignment:
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattattt 224  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||    
T  45699577 accaaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 34147216 - 34147133
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||  |||||||||  |||||||||||||||||| ||||| | ||||||||   |||||||||| || |||||||||    
T  34147216 gggaccaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttgagggaccaaatgacctattaagcct 34147133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 40559122 - 40559229
Alignment:
Q  144 ttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaat 243  Q
    ||||||||||  |||||| ||| ||||||||| | |   ||||| ||||||||||||||||||| ||||    ||||| |||||||||||||| || |||    
T  40559122 ttgactgacgaggcaaaagcaaagggaccaaattattgattttagaacttatgggaccaaaatgaaaacaacaaattagttagaggaccaaatatcgaat 40559221  T
Q  244 taagcctt 251  Q
    ||||||||    
T  40559222 taagcctt 40559229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 1149240 - 1149314
Alignment:
Q  183 ttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagccttgttttt 257  Q
    ||||| || |||||||||||||||| ||||    ||||| |||| |||||||| |||||||||||||||||||||    
T  1149240 ttttagaagttatgggaccaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagccttgttttt 1149314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 25559385 - 25559280
Alignment:
Q  144 ttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaat 243  Q
    |||||||||||||||||| ||| |||||||||  ||   ||||| ||||||||||||||||||  ||||    ||||| |||| ||||||||| || |||    
T  25559385 ttgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaaatatcgaat 25559286  T
Q  244 taagcc 249  Q
    ||||||    
T  25559285 taagcc 25559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 40557043 - 40556938
Alignment:
Q  144 ttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaat 243  Q
    ||||||||||| |||||| ||| |||||||||  ||   ||||| |||||||| |||||||||| ||||    ||||| |||||||||||||| || |||    
T  40557043 ttgactgacggggcaaaagcaaagggaccaaatcgttgattttagaacttatgagaccaaaatgaaaacaacaaattaattagaggaccaaatatcaaat 40556944  T
Q  244 taagcc 249  Q
    ||||||    
T  40556943 taagcc 40556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 28544941 - 28544981
Alignment:
Q  117 attaaaaaactaacggaggggatcaatttgactgacggagc 157  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  28544941 attaaaaaactaacgtagaggatcaatttgactgacggagc 28544981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 2717717 - 2717803
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaa-ctaacggaggggatcaatttgactgac 152  Q
    |||||||||| || ||||||| || ||| |||| |||| |||| ||||||||||||||| ||||||| | |||| || |||||||||    
T  2717717 tataatggacgtgcaatcaaatggttaaaatcagatcagaaatattaaacattaaaaaagctaacggtgaggattaagttgactgac 2717803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 9473991 - 9474073
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgac 152  Q
    |||||||||| |||| ||  | ||| || ||||||||||| ||||||||||||||  ||| |||||||| || ||||||||||    
T  9473991 aatggacatgcaatcgaatagttaaaattatatcaaaaatattaaacattaaaaatttaatggaggggaccactttgactgac 9474073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 3533579 - 3533631
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacgga 133  Q
    |||||||||| | | |||||||||||||  ||||||||||||| |||||||||    
T  3533579 aatcaaacggttgaaatcatatcaaaaaacttaaacattaaaatactaacgga 3533631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 14479397 - 14479635
Alignment:
Q  13 gaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaatttt 112  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  14479397 gaagagagaagatgatagtcctggaaaaattaggtgctgacggctcactataggtataatggacatgcaatcaaacggctaatataatatcaaaaatttt 14479496  T
Q  113 aaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaac 212  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14479497 aatcattaaaaaactaacggaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaac 14479596  T
Q  213 tcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14479597 tcataattatttaggggaccaaatgtccaattaagcctt 14479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 28051495 - 28051726
Alignment:
Q  18 gagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaaca 117  Q
    |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  28051495 gagaagatgatagtgctggaaaaattaggtgccgacggctcactataggtataatggacatgcaatcaaacagctaatatcatatcaaaaattttaaaca 28051594  T
Q  118 ttaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcata 217  Q
    |||||||| |||||||  | |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28051595 ttaaaaaattaacgga-tgaatcaatttgactaacggagcaaaatcaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcata 28051693  T
Q  218 attatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||| | | ||||| |||||||||||||    
T  28051694 attatttagggaatcaaatatccaattaagcct 28051726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 37 - 248
Target Start/End: Original strand, 51446749 - 51446960
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||| ||| ||||| || |  ||||||||||||||||| |||||||| | ||| ||||||||||||| |||| | ||||||||||||||||||||    
T  51446749 aaaaattagatgctgacggttcacaataggtataatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaacggaggg 51446848  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaat 236  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||    
T  51446849 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgggttttacaatttatgtgaccaaaatgtaaatgcataattatttagaggaccaaat 51446948  T
Q  237 gtccaattaagc 248  Q
    ||||||||||||    
T  51446949 gtccaattaagc 51446960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 51445694 - 51445586
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51445694 tttgactgacagatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 51445595  T
Q  243 ttaagcctt 251  Q
    |||||||||    
T  51445594 ttaagcctt 51445586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 14478370 - 14478264
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  14478370 tttgactgacggagcaaaacccagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggaccaaatgtccaa 14478271  T
Q  243 ttaagcc 249  Q
    |||||||    
T  14478270 ttaagcc 14478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 40533543 - 40533706
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    |||||||||| |||| || || ||| |||||||||||| ||||| ||||||||||| |||||||||||| |  ||||||| |||||||||| | |  |||    
T  40533543 aatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagaggg 40533642  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggacca 233  Q
    ||||||||||  ||||||||| |||||| ||||||||||||||| |||||||||||| ||||||    
T  40533643 accaaaatgttggttttacaatttatggaaccaaaatgtaaactgataattatttaggggacca 40533706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 28050425 - 28050318
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| ||||||||||| ||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||| ||    
T  28050425 tttgactaacggagcaaaatcaaggggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaa 28050326  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  28050325 ttaagcct 28050318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 12667181 - 12667395
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    |||||||| |||| ||||| || ||| |  || ||| |||||| ||||||| |  ||| |||| |||||||| |||  ||||||||||||||||||||||    
T  12667181 aaaaattaagtgctgacggttcactggaaatacaatagacatgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggg 12667280  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaat 236  Q
    || ||| |||||| |||||||||||| |  |||||| |||||| | |||||| | || | ||||||||||| ||||| ||||||||||||||||| |||     
T  12667281 gaccaagttgactaacggagcaaaacaagagggaccgaaatgttaattttacgaattctaggaccaaaatgaaaactgataattatttagaggactaaaa 12667380  T
Q  237 gtccaattaagcctt 251  Q
     ||||||||||||||    
T  12667381 atccaattaagcctt 12667395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 48528862 - 48529015
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttat 195  Q
    |||| ||||||| ||||| | ||||||||||||||||| |||| ||| |||||| |||||| ||||  |  ||||| |||||||   |||||| | ||||    
T  48528862 atcaaatcaaaagttttagatattaaaaaactaacggatgggaccaaattgactaacggagaaaaataagagggactaaaatgttgattttacgagttat 48528961  T
Q  196 gggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    |||||||||||||||||    ||||| || | |||||||| |||||||||||||    
T  48528962 gggaccaaaatgtaaacaacaaattacttgggggaccaaaagtccaattaagcc 48529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 40634711 - 40634793
Alignment:
Q  151 acggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggacca 233  Q
    ||||||||||| ||||||||| |||||||||||||||  | |||| ||| |||||||||||||   |||||||||| ||||||    
T  40634711 acggagcaaaatcaaggggacgaaaatgtgagttttatgatttatcggatcaaaatgtaaactgcaaattatttaggggacca 40634793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 24516508 - 24516448
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    |||||||||| ||||||| || ||| |||||||||| ||||||| ||||||||||||||||    
T  24516508 aatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaac 24516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 40110594 - 40110654
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    |||||||||| ||||||| || ||| |||||||||| ||||||| ||||||||||||||||    
T  40110594 aatggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaac 40110654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 48527614 - 48527531
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||||| | |||||| | |||||||||||||||||||||    ||||| |||| ||||||||  |||||||||||||    
T  48527614 gggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaaatccaattaagcct 48527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 26287820 - 26287902
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    |||||||||||||   |||||| | |||||||||||||||| ||||    ||||| ||||||||||||| |||||||||||||    
T  26287820 gggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaaagtccaattaagcc 26287902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 14429917 - 14429849
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgact 149  Q
    |||||||||| ||| |||||||||| ||| ||| ||||||||||| |||| |||  |||||||||||||    
T  14429917 aatcaaacggttaaaatcatatcaagaatattagacattaaaaaaataacagagatgatcaatttgact 14429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 5611803 - 5611724
Alignment:
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||||||   |||||||| |||||||||||||||| ||||    ||||| ||| ||||||||| |||||||||||||    
T  5611803 accaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattagttaaaggaccaaaagtccaattaagcc 5611724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 15746802 - 15746885
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||  |||||||||  |||||||||||||||||| ||| |   ||||| |||| |||||||||| || |||||||||    
T  15746802 gggaccaaaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattaggggaccaaatgacctattaagcct 15746885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 9417050 - 9417103
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| ||  ||||||| |||||| ||| ||||||||||||||||||||    
T  9417050 aatcaaacggttataatcatattaaaaatattatacattaaaaaactaacggag 9417103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 29000011 - 28999954
Alignment:
Q  72 tggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 129  Q
    ||||| || |||||||||||||  ||||||| |||||| ||| |||||||||||||||    
T  29000011 tggacctgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaa 28999954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 33941480 - 33941431
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    |||||||||| ||| ||||||| |||||| ||| ||||||||||||||||    
T  33941480 aatcaaacggttaaaatcatattaaaaatgttagacattaaaaaactaac 33941431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 50679774 - 50679827
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| | | | ||||||||||| |||| ||||||||||||||||||||    
T  50679774 aatcaaacggttgaaaacatatcaaaaaatttagacattaaaaaactaacggag 50679827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 12665855 - 12665787
Alignment:
Q  183 ttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    |||||| | |||||||||||||||  ||||| ||||||| |||| ||||||||  || |||||||||||    
T  12665855 ttttacgaattatgggaccaaaataaaaactgataattacttaggggaccaaaaatcaaattaagcctt 12665787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 26495361 - 26495119
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||  |||||| |||||||||||||||||||||||||||    
T  26495361 gagaagaagagagaagatgatagtgctggaaaaattaggtgccgatggctcactataggtataacagacatgcaatcaaacggctaatatcatatcaaaa 26495262  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  26495261 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttataggagcaaaatg 26495162  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||||||||||| ||||||||| | |||||||||||    
T  26495161 taaactcataattatttaggggaccaaatattcaattaagcct 26495119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 8363266 - 8363508
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||| |||||  | ||||||||||||||||| ||||||||| | |||||||||||||||    
T  8363266 gagaagaagagagaagatgatagtgctggaaaaattaggtaccgatggctcattataggtataatggacatgcaatcaaacgacgaatatcatatcaaaa 8363365  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  8363366 attttaaacattaaaaaactaacggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggaccaaaatg 8363465  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  8363466 taaactcataattatttaggggaccaaatgtccaattaagcct 8363508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 36244644 - 36244886
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||||||||     
T  36244644 gagaagaagagagaagatgatagagctggaaaaattaggtgccgacggctgactataggtataatggacatgcaatcaaacggctaatatcatatcaaac 36244743  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||    
T  36244744 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaatcaaggggacaaaaatgtgagttttacaatttatgggatcaaaatg 36244843  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||||||||| | ||||||||| |||||||||||||    
T  36244844 taaactcataattattttggggaccaaatatccaattaagcct 36244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 56157174 - 56156933
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||| |||  |||||||||| |||||| ||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||    
T  56157174 gagaagaagagagaagataatagcgctggaaaaactaggtgtcgacggctcactataggtataatggacatgcaaccaaacggctaatatcatatcaaaa 56157075  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  56157074 attttaaacattaaaaaactaacggagggggtcaatttgattgacggagcaaaaccaaggagaccaaaatgtgagttttacaatttatgggaccaaaatg 56156975  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  56156974 taaactcataattatttaggggaccaaatatccaattaagcc 56156933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 52137636 - 52137423
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||| ||| ||||| || || || |||||||||||||| |||||||||| ||| ||||||||||||| |||| ||||| ||||||||||||||      
T  52137636 aaaaattagctgctgacggttcactataagtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacggagat 52137537  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaat 236  Q
    ||| |||||||| ||||||| ||||||||| ||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  52137536 gatgaatttgaccgacggagtaaaaccaagaggaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaat 52137437  T
Q  237 gtccaattaagcct 250  Q
     |||||||||||||    
T  52137436 atccaattaagcct 52137423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 20625516 - 20625630
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||||| |||||||||| ||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20625516 tttgactgacggaccaaaaccaagaggactcaactgtaagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 20625615  T
Q  243 ttaagccttgttttt 257  Q
    ||||||||| |||||    
T  20625616 ttaagcctttttttt 20625630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 26496321 - 26496428
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  26496321 tttgactgacggagcaaacctaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttagaggaccaaatgtccaa 26496420  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  26496421 ttaagcct 26496428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 20620243 - 20620137
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20620243 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaaggtccaa 20620144  T
Q  243 ttaagcc 249  Q
    |||||||    
T  20620143 ttaagcc 20620137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 36243623 - 36243519
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  36243623 tttgactaacagagcaaaactaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 36243524  T
Q  243 ttaag 247  Q
    |||||    
T  36243523 ttaag 36243519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 56157508 - 56157615
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||| |||||    
T  56157508 tttgactaatggagcaaaaccaaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 56157607  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  56157608 ttaagcct 56157615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 44499890 - 44500067
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||||||| ||||| || || ||| || |||||||||| |||||||||| ||| |||| |||||||| | || ||||||| |||||||||||| |    
T  44499890 aaaaattaggtgctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggagtg 44499989  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatg-tgagttttacaacttatgggaccaaaatgtaaactc 214  Q
    ||||||||||||| |||||||||||   | |||||||||||| ||| |||||  | |||||||||||||| | ||||||    
T  44499990 gatcaatttgactaacggagcaaaagttaagggaccaaaatgatga-ttttaagagttatgggaccaaaacgaaaactc 44500067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 249
Target Start/End: Complemental strand, 35348963 - 35348795
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtg 180  Q
    ||||||| || ||| |||| ||||||||||||| |||||||||| |||||||||||||  || |||||||||| |||||||| |  ||||| |||| ||     
T  35348963 aatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaaacaagagggactaaaacgtt 35348864  T
Q  181 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
      |||||||| |||||||||||||||| ||||    ||||| |||  |||||||| |||||||||||||    
T  35348863 gattttacaagttatgggaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagcc 35348795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 36846496 - 36846674
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaag 166  Q
    ||||||||||||| ||||||| || ||| |||| |||||||| |||| ||||||||| ||||||||| |||| ||| |||||  |||||||||||| |      
T  36846496 tataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaa-actaacggaagggaccaaattgacgaacggagcaaaacaaga 36846594  T
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaa 246  Q
    |||||||||||||   |||||| | |||||||||||||||| ||||    ||||| |||| || ||||| ||||||||||    
T  36846595 gggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagggggccaaaagtccaattaa 36846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 52138815 - 52138912
Alignment:
Q  151 acggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    |||||||||||||||| ||||||||||| | || |||||| ||||| || |||||| ||||| ||||||||||||||||| |||||||| |||||||||    
T  52138815 acggagcaaaaccaagaggaccaaaatggg-gtcttacaatttatgtgatcaaaatataaacgcataattatttagaggatcaaatgtcgaattaagcc 52138912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 249
Target Start/End: Complemental strand, 39056591 - 39056423
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtg 180  Q
    ||||||| || ||| |||| ||||||||||||| |||||||||| ||||||| ||| |  || |||||| |||||||||||| |  ||||| |||| ||     
T  39056591 aatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggtgggaactaaattgactaacggagcaaaacaagagggactaaaacgtt 39056492  T
Q  181 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
      |||||||| ||||| |||||||||| ||||    ||||| |||  |||||||| |||||||||||||    
T  39056491 gattttacaaattatgagaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagcc 39056423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 257
Target Start/End: Original strand, 26631162 - 26631345
Alignment:
Q  74 gacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacca 173  Q
    |||||| ||||||  || ||| |||| |||||||| |||| ||||||||  || ||||||||||| ||| |||||| |||||||||||| |  || ||||    
T  26631162 gacatgcaatcaagtggttaaaatcaaatcaaaaaatttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagaggaacca 26631261  T
Q  174 aaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagccttgttttt 257  Q
    ||||||   |||||| | ||||| |||||||||| |||     ||||| || | |||||||| ||||||||||||||| |||||    
T  26631262 aaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttgggggaccaaaagtccaattaagcctttttttt 26631345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 46795934 - 46796032
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgt-aggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||||||||||||||| || || | |  || |||||||||| ||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||    
T  46795934 aaaaattaggtgccgacggttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 46796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 307747 - 307811
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| ||||| | || ||| ||||||||||||| ||||||||||||||||| |||||||    
T  307747 aatggacatgcaatcatatggttaaaatcatatcaaaaaatttaaacattaaaaaaccaacggag 307811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 41348413 - 41348354
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 129  Q
    |||||||||| ||||||| |  ||| |||||||||||||||||| |||||||||||||||    
T  41348413 aatggacatgcaatcaaatgattaaaatcatatcaaaaattttatacattaaaaaactaa 41348354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 669550 - 669751
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    |||||||| |||  || ||||| | |||| ||||||||||||| |||||||||| ||| ||| ||| || |  || | ||||||||| | ||| |||| |    
T  669550 aaaaattaagtgatgatggctcaccgtagatataatggacatgcaatcaaacggttaaaatcgtataaatatattcagacattaaaacattaatggagtg 669649  T
Q  137 gatcaatttgactgacgg-agcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaa 235  Q
    || ||||||||||||||| | | | |     |||||||||||||||||||||  | |||||||||||||||| ||| | | ||||| || | ||||||||    
T  669650 gaccaatttgactgacgggacctataattgagggaccaaaatgtgagttttattaattatgggaccaaaatgaaaattgaaaattaattgggggaccaaa 669749  T
Q  236 tg 237  Q
    ||    
T  669750 tg 669751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 29665516 - 29665580
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| ||||||| || ||| |||| |||||||| |||| ||||||||||| ||||||||    
T  29665516 aatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaattaacggag 29665580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 40723333 - 40723225
Alignment:
Q  142 atttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaact-cataattatttagaggaccaaatgtcc 240  Q
    ||||||| |||||||  ||||| | ||||||||||  |||||||||  | |||||||||||||||| ||| | || ||||| |||| |||||||||| ||    
T  40723333 atttgaccgacggagataaacctaagggaccaaaacatgagttttattagttatgggaccaaaatgaaaattgcaaaattaattaggggaccaaatgacc 40723234  T
Q  241 aattaagcc 249  Q
     ||||||||    
T  40723233 tattaagcc 40723225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1521230 - 1521313
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    |||||||||||||   |||||| | |||||||| ||||||| ||||    ||||| ||||||||||||| ||||||||||||||    
T  1521230 gggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaattagttagaggaccaaaagtccaattaagcct 1521313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 2162689 - 2162622
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaa 234  Q
    ||||||||||| |||||||||  | ||||||||| |||||| ||||| | ||||| ||||||||||||    
T  2162689 gggaccaaaatatgagttttattagttatgggactaaaatgaaaactgaaaattaattagaggaccaa 2162622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 47667386 - 47667291
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgt-aggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 131  Q
    ||||||||||||| ||||| || || | || || |||||||||| ||||||| || ||| |||| || ||||| |||| |||||||||||||||||    
T  47667386 aaaaattaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacg 47667291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 37106263 - 37106325
Alignment:
Q  144 ttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaat 206  Q
    |||||||||||||||||| ||| |||||||||  ||   ||||| ||||||||||||||||||    
T  37106263 ttgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaat 37106325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 38417727 - 38417663
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||| || |||||||||| | | ||||||| ||||| | |||||||||||| ||||||||||    
T  38417727 aatggacctgcaatcaaacggttgaaatcatattaaaaaatctaaacattaaaatactaacggag 38417663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 38554091 - 38554039
Alignment:
Q  82 atcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||| || ||| ||||||||||||| |||| ||||||||||||||| ||||    
T  38554091 atcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggag 38554039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 11796807 - 11796565
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||    
T  11796807 gagaagaagagagaagatgatagtgctggaaaaattagatgccgacggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaa 11796708  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
     |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  11796707 gttttaaacattaaaaaactagcggatgggatcaatttgactgagggagcaaaaccaa-gggaccaaaatatgagttttacaatttatgggaccaaaatg 11796609  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  11796608 taaactcataattatttaggggaccaaatgtccaattaagcctt 11796565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 23326016 - 23325910
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23326016 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23325917  T
Q  243 ttaagcc 249  Q
    |||||||    
T  23325916 ttaagcc 23325910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 23333979 - 23334086
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||||| |||||||||| ||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333979 tttgactgacggaccaaaaccaagaggactcaactgttagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23334078  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  23334079 ttaagcct 23334086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 10736877 - 10737053
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    |||||||||  ||||||| || ||| |||| ||||||||||||| ||||||||||  |||||||||||| ||| |||| | |||||||||||| |  |||    
T  10736877 aatggacattcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggaggggaccaaattgattaacggagcaaaacaagaggg 10736976  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaa 246  Q
    ||||||||||   |||||| | |||||||||||||||| ||||    ||||| |||| |||||||| ||||||||||    
T  10736977 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaaagtccaattaa 10737053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 11797545 - 11797652
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| |||||| ||||| |  |||||||||||||   |||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  11797545 tttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 11797644  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  11797645 ttaagcct 11797652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 9219353 - 9219262
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 161  Q
    |||| ||||| |||||||||| ||| |||| || |||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||    
T  9219353 aatgaacatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggaggggatcaaattgactaatggagcaaaa 9219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 10978218 - 10978303
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga 155  Q
    ||||| |||| |||| || || ||| || ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  10978218 aatgggcatgcaatcgaatggttaaaattatatcaaaaatattaaacattaaaaatctaacggaggggatcactttgactgacgga 10978303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 13519649 - 13519470
Alignment:
Q  75 acatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaa-----ctaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    ||||| ||||||| || ||| |||||||||||| ||||| |||||||||||     |||||||| ||||||||||||||  |||||||||||| |   ||    
T  13519649 acatgcaatcaaatggttaaaatcatatcaaaagttttagacattaaaaaactaaactaacggaagggatcaatttgacaaacggagcaaaacaagaagg 13519550  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||   |||| | | ||||||||| |||||||||||    ||||| |||| ||| |||| ||||||||||||||    
T  13519549 accaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattagttag-ggaacaaaagtccaattaagcct 13519470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 8188139 - 8188206
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||||||||| ||||||| || ||| ||||||||| |||||||| ||||||||||||||||||||    
T  8188139 tataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggag 8188206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 4124903 - 4124754
Alignment:
Q  101 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggac 200  Q
    ||||||| |||||||||||||| |||||| | |||||| ||| || ||| |||||||||||| || |||||||||| ||   |||||  | |||||| ||    
T  4124903 atcaaaatttttaaacattaaacaactaatgaaggggaccaaattaactaacggagcaaaacaaaagggaccaaaacgttgattttatgaattatggaac 4124804  T
Q  201 caaaatgtaaac-tcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||| ||||   | | ||| ||||||||||||| |||||||||||||    
T  4124803 caaaatgaaaacaagaaatttacttagaggaccaaaagtccaattaagcc 4124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 1273266 - 1273195
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 138  Q
    |||||||||| || |||| || || | | |||||||||||||| ||||||||||||||||||||||||||||    
T  1273266 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggagggga 1273195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 10735867 - 10735760
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| |||||||||||| |  |||||||||| ||   |||||| | |||||||||||||||| ||||   |||||| |||| |||||||| ||||||    
T  10735867 tttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagtccaa 10735768  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  10735767 ttaagcct 10735760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 5975932 - 5975870
Alignment:
Q  68 ataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    |||||||||||| ||||||| || ||| ||||||||||||| |||| ||||||||||||||||    
T  5975932 ataatggacatgcaatcaaatggttaaaatcatatcaaaaactttagacattaaaaaactaac 5975870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 13520794 - 13520864
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaact 213  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||| || |||||| || ||| ||||||||    
T  13520794 tttgactaacggagcaaaaccaagaggaccaaaatgtgggttttataatttatggaactaaagtgtaaact 13520864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 15857586 - 15857624
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15857586 atcatatcaaaaatattaaacattaaaaaactaacggag 15857624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 41143343 - 41143237
Alignment:
Q  144 ttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaat 243  Q
    ||||||||| |||||||| ||| |||||||||||||   ||||| |||||||| |||||||||  ||||    ||||| |||||||| |||  |||||||    
T  41143343 ttgactgacagagcaaaaacaaagggaccaaaatgttgattttagaacttatgagaccaaaataaaaacaacaaattagttagaggatcaagagtccaat 41143244  T
Q  244 taagcct 250  Q
    |||||||    
T  41143243 taagcct 41143237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 41144530 - 41144636
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| ||||||||||| ||| |||||||||| ||   ||||| || |||||||||||||||| ||||    ||||| |||| ||||||||  |||||    
T  41144530 tttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaaatccaa 41144629  T
Q  243 ttaagcc 249  Q
    |||||||    
T  41144630 ttaagcc 41144636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 18695600 - 18695653
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| | | | |||||||||||||||| ||||||||||||||||||||    
T  18695600 aatcaaacggttgaaaacatatcaaaaattttagacattaaaaaactaacggag 18695653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 22812325 - 22812397
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacatt-aaaaaactaacggagggga 138  Q
    |||||||||| || |||| || || | | |||||||||||||| ||||||||| |||||||||||||||||||    
T  22812325 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaaactaacggagggga 22812397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 42642008 - 42642128
Alignment:
Q  129 acggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagag 228  Q
    ||||| |||||||  ||||||||||| |||||| ||| ||||| |||  ||   ||||| ||||||||||| ||||||| ||||    ||||| ||||||    
T  42642008 acggaagggatcatattgactgacggggcaaaagcaaagggactaaatcgttgattttagaacttatgggatcaaaatgaaaacaataaattagttagag 42642107  T
Q  229 gaccaaatgtccaattaagcc 249  Q
    |||||||| || |||||||||    
T  42642108 gaccaaatatcgaattaagcc 42642128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 4127290 - 4127373
Alignment:
Q  168 ggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    ||||||||| || | |||||| | |||||||||||||||| ||||    ||||| ||||||||||||  |||||||||||||||    
T  4127290 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttagaggaccaagggtccaattaagcctt 4127373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 5384317 - 5384352
Alignment:
Q  99 atatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5384317 atatcaaaaatattaaacattaaaaaactaacggag 5384352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 35081489 - 35081556
Alignment:
Q  183 ttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    |||||| | |||||||||||||||| ||||  | ||||| |||| |||||||| ||||||||||||||    
T  35081489 ttttacgagttatgggaccaaaatgaaaacaaacaattacttaggggaccaaaagtccaattaagcct 35081556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 224559 - 224596
Alignment:
Q  97 tcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  224559 tcatatcaaaaaatttagacattaaaaaactaacggag 224596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 21389096 - 21389149
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||| | | | ||||| |||||||||| ||||||||||||||||||||    
T  21389096 aatcaaacggttgaaaacatataaaaaattttagacattaaaaaactaacggag 21389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 8523794 - 8523866
Alignment:
Q  179 tgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    |||||||||  | |||||||||||||||| |||||   ||||| |||| |||||||||| || ||||||||||    
T  8523794 tgagttttattagttatgggaccaaaatgaaaacttgaaattaattaggggaccaaatgacctattaagcctt 8523866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 28702649 - 28702565
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    |||||||||| || | |||||| | |||||||||||||||| ||||    ||||| |||| |||| ||| |||||||||||||||    
T  28702649 gggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggacaaaaagtccaattaagcctt 28702565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 41329347 - 41329588
Alignment:
Q  8 gagatgaagagagaagatgatattgctggaaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaa 107  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||| ||||| || ||||||||||||||||| |||||||||| |||||||| |||||||    
T  41329347 gagaagaagagagaagatgatagtgctgaaaaaattaggtgccgatggctcactataggtataatggacatgcaatcaaacggttaatatcacatcaaaa 41329446  T
Q  108 attttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatg 207  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  41329447 aatttaaacattaaaaatctaacggaggggatcaatttgactgacggagtaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatg 41329546  T
Q  208 taaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  41329547 taaactcataattatttaggggaccaaatgtccaattaagcc 41329588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 32653673 - 32653461
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||||||| ||| | || |||||||||||||||||||| |||||||||| ||| || |||||||||||||||  |||||||||||||||||| ||    
T  32653673 aaaaattaggtgctgacagttcactgtaggtataatggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacggatgg 32653574  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaat 236  Q
    || || | |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||  |||| ||||    
T  32653573 gaccattctgaccgacggagcaaaaccaaggggaccgaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttaagggactaaat 32653474  T
Q  237 gtccaattaagcc 249  Q
     ||||||||||||    
T  32653473 atccaattaagcc 32653461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 35296724 - 35296918
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||||||| |  |||||  | || |||||||||||||| |||||||||| ||| ||||||||||||| |||| ||||||||||| ||||||||      
T  35296724 aaaaattaggtgctggtggctcattatatgtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagat 35296823  T
Q  137 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggac 231  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||   |||||||||||||||    
T  35296824 gatcaatttgactaacggagcaaaaccaagggtaccaaaatgtgagttttacaatttataggaccaaaatgtaaactacaaattatttagaggac 35296918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 41328323 - 41328216
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||| |||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41328323 tttgattgactgatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 41328224  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  41328223 ttaagcct 41328216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 39981421 - 39981314
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||| |||||||||||  |||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||| |||||||||||    
T  39981421 tttgactgacgaagcaaaaccaaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaa 39981322  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  39981321 ttaagcct 39981314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 252
Target Start/End: Complemental strand, 666906 - 666721
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaag 166  Q
    |||||| |||||| ||| ||| || ||| |||| |||||||| |||  ||||||||| |||||||||||||| ||| |||||| |||||||||||| |      
T  666906 tataatagacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattgactaacggagcaaaacaaga 666807  T
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagccttg 252  Q
    |||||| |||| | | |||||  | ||||| || ||||||| ||||| |||||||||||| |||| |||  |||||||||||||||    
T  666806 gggaccgaaatattaattttatgagttatgagatcaaaatgaaaactgataattatttaggggactaaaaatccaattaagccttg 666721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 43442705 - 43442878
Alignment:
Q  73 ggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacc 172  Q
    ||||||| |||||||  | ||| |||| |||||||| |||| ||||||||| |||||||||||||| ||| |||||| |||||||||||| |  ||||||    
T  43442705 ggacatgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaacaagagggacc 43442804  T
Q  173 aaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaa 246  Q
    |||||||   |||||| | |||||||||||| ||| ||||    ||||| |||| |||||||| || |||||||    
T  43442805 aaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattacttaggggaccaaaagttcaattaa 43442878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 81 - 251
Target Start/End: Complemental strand, 10956011 - 10955841
Alignment:
Q  81 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtg 180  Q
    ||||||| || ||| |||| ||||||||||||| |||||||||| |||||||||||||  || |||||| |||||||||||| |  ||||| |||| ||     
T  10956011 aatcaaatggttaaaatcaaatcaaaaattttagacattaaaaatctaacggaggggactaaattgactaacggagcaaaacaagagggactaaaacgtt 10955912  T
Q  181 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
      ||||| || |||||| | ||||||| ||||    ||||| |||  |||||||| |||||||||||||||    
T  10955911 gattttataagttatggaatcaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagcctt 10955841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 32653729 - 32653784
Alignment:
Q  193 tatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagc 248  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  32653729 tatgggaccaaaatgtaaatacataattatttaggggaccaaatgtccaattaagc 32653784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 44376644 - 44376762
Alignment:
Q  87 acggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatg-tgagttt 185  Q
    |||| ||| |||| |||||||| |||| |||||||||||||||||||| |||| ||||||||| | |||||||||   | |||||||||||| ||| |||    
T  44376644 acggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatga-ttt 44376742  T
Q  186 tacaacttatgggaccaaaa 205  Q
    || || ||||||||||||||    
T  44376743 taaaagttatgggaccaaaa 44376762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 44385511 - 44385629
Alignment:
Q  87 acggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatg-tgagttt 185  Q
    |||| ||| |||| |||||||| |||| |||||||||||||||||||| |||| ||||||||| | |||||||||   | |||||||||||| ||| |||    
T  44385511 acggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatga-ttt 44385609  T
Q  186 tacaacttatgggaccaaaa 205  Q
    || || ||||||||||||||    
T  44385610 taaaagttatgggaccaaaa 44385629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 26146672 - 26146730
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgg 154  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  26146672 atcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacgg 26146730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 28326298 - 28326396
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgt-aggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||||||||||||||| || || | |  ||||||||||||| ||||||| || ||| ||||||| ||||| |||| ||||||||||||||||||||    
T  28326298 aaaaattaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggag 28326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 29589206 - 29589269
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    ||||||||| ||| ||||||| || ||| |||| ||||||||||||||||||||||||||||||    
T  29589206 tataatggatatgaaatcaaatggttaaaatcaaatcaaaaattttaaacattaaaaaactaac 29589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 41515204 - 41515106
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgt-aggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||||||||||||||| || || | |  ||||||||||||| ||||||| || ||| ||||||| ||||| |||| ||||||||||| ||||||||    
T  41515204 aaaaattaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaaaaactttagacattaaaaaattaacggag 41515106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 17288184 - 17288249
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagg 135  Q
    |||||||||| |||||||  | ||| ||||||||||||| |||| |||||||||||||||||||||    
T  17288184 aatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacggagg 17288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 669440 - 669507
Alignment:
Q  183 ttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    |||||| | |||||||||||||||| ||||| ||||||| |||| ||||||||  |||||||||||||    
T  669440 ttttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaattaagcct 669507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 25532321 - 25532257
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 131  Q
    |||||||||| || |||| || || | | |||||||||||||| |||||||||||||||||||||    
T  25532321 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacg 25532257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 45721708 - 45721779
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 141  Q
    |||| ||||| ||||||| || ||| |||| || ||||| |||| |||||||||||||||||||| ||||||    
T  45721708 aatgaacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggatca 45721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 18670448 - 18670506
Alignment:
Q  72 tggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    ||||| || |||||||||||||  ||||||| |||||| ||| ||||||||||||||||    
T  18670448 tggacctgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaac 18670506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 29861638 - 29861588
Alignment:
Q  105 aaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga 155  Q
    ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||    
T  29861638 aaaatattagacataaaaaaactaacggaatggatcaatttgactgacgga 29861588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 43931834 - 43931876
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggagggga 138  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||    
T  43931834 atcatttcaaaaatgttagacattaaaaaactaacggagggga 43931876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 10957190 - 10957271
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagc 248  Q
    |||||||||| || | |||||| | |||||||||||||||| ||||    ||||| |||| |||||||| ||||||||||||    
T  10957190 gggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaccaaaagtccaattaagc 10957271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 26135705 - 26135638
Alignment:
Q  183 ttttacaacttatgggaccaaaatgtaaac-tcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||| || |||||||||||||||| |||| ||| ||||| |||| |||||||| ||||||||||||||    
T  26135705 ttttagaagttatgggaccaaaatgaaaacatca-aattagttaggggaccaaaagtccaattaagcct 26135638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 7074 - 6892
Alignment:
Q  67 tataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaag 166  Q
    ||||||||||||| |||||||||| ||| || |||||||||| |||| | ||| |||||||||||||||| ||||||||||| ||||||||||||||||     
T  7074 tataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggaggg-atcaatttgaccgacggagcaaaaccaaa 6976  T
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    || ||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6975 ggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagcct 6892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 8194 - 8317
Alignment:
Q  135 gggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaa 234  Q
    |||||||| |||||| |||||| ||||| |  |||||||||||||   |||||| | |||||||||||||||||||||  | ||||| |||| |||||||    
T  8194 gggatcaaattgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaa 8293  T
Q  235 atgtccaattaagccttgttttta 258  Q
    | || |||||||||||| ||||||    
T  8294 aagttcaattaagcctttttttta 8317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 9853751 - 9853564
Alignment:
Q  63 taggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 162  Q
    ||||||||||||| ||| |||||||||| ||| || |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9853751 taggtataatggatatgcaatcaaacggttaaaattatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 9853652  T
Q  163 caaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    | ||| ||||||||| | |||||||||| ||||||||||||||| |||||  ||||||||||| |||| | ||||| |||||||||||    
T  9853651 ccaggagaccaaaatattagttttacaatttatgggaccaaaatataaacatataattatttaaaggagctaatgttcaattaagcct 9853564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 9854891 - 9854998
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||||||||||||||| |||| |||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9854891 tttgactgacggagcaaaatcaagaggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaa 9854990  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  9854991 ttaagcct 9854998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 42793876 - 42793720
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    |||||||||| |||| || || ||| |||||||||||| ||||| ||||||||||| |||| ||||||| |  ||||||| |||||||||||| |  |||    
T  42793876 aatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagaggggacctttttgactaacggagcaaaacaagaggg 42793777  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttag 226  Q
    |||||||||| | |||||||| ||||||||||||||| ||||||  |||||||||||    
T  42793776 accaaaatgttaattttacaatttatgggaccaaaatataaactggtaattatttag 42793720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 38697333 - 38697178
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    ||||||||| ||||| || || |||  ||||||||||| ||||| ||||||||| | |||||||||||| |  ||||||||| |||||||||  || |||    
T  38697333 aatggacatataatctaatggttaaattcatatcaaaagttttagacattaaaatagtaacggaggggacctttttgactgagggagcaaaataaaaggg 38697234  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattattta 225  Q
    ||||||||||  |||||| || ||||| |||||||||||||| | |||||||||||    
T  38697233 accaaaatgttggttttataatttatgagaccaaaatgtaaattgataattattta 38697178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 43203219 - 43203400
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 169  Q
    |||||||||| ||||||| |  ||| || | |||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||  |  |||    
T  43203219 aatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggaccaaattgactgacggagcaaaataagaggg 43203318  T
Q  170 accaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctt 251  Q
    ||  ||||||   |||||| | |||||||||||||||| |||     |||||||||  |||||||| |||||||||||||||    
T  43203319 acggaaatgttgattttacgagttatgggaccaaaatgaaaataacaaattatttaatggaccaaaagtccaattaagcctt 43203400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 24191587 - 24191463
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    ||||||||||||| ||||| || || ||| || |||||||||| |||||||||| ||| |||| |||||||| |||| ||||||| |||||||||||| |    
T  24191587 aaaaattaggtgctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaacggagtg 24191488  T
Q  137 gatcaatttgactgacggagcaaaa 161  Q
    ||||||||||| | || ||||||||    
T  24191487 gatcaatttgagtaacagagcaaaa 24191463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 249
Target Start/End: Complemental strand, 31844541 - 31844366
Alignment:
Q  74 gacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacca 173  Q
    |||||| ||||||  || ||| |||| ||||||||||||| | ||||||  || ||||||||||| ||| |||||| |||||||||||| |  |||||||    
T  31844541 gacatgcaatcaagtggttaaaatcaaatcaaaaattttagaaattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagagggacca 31844442  T
Q  174 aaatgtgagttttacaacttatgggaccaaaatgtaaactcataatta-tttagaggaccaaatgtccaattaagcc 249  Q
    |||||| | |||||| | ||| ||||| |||||| ||||    ||||| ||||| |||||||| |||||||||||||    
T  31844441 aaatgttaattttacgagttacgggactaaaatgaaaacaacaaattactttag-ggaccaaaagtccaattaagcc 31844366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 45395924 - 45396042
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 136  Q
    |||||||||||||||| || |  || ||  || |||||||||| |||||||||| ||| ||| ||| |||||| | | ||||||| |||||||||||| |    
T  45395924 aaaaattaggtgccgatggtttactatatatacaatggacatgcaatcaaacggttaaaatcgtataaaaaatatcagacattaagaaactaacggagtg 45396023  T
Q  137 gatcaatttgactgacgga 155  Q
    || ||||||||||||||||    
T  45396024 gaccaatttgactgacgga 45396042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 41743652 - 41743741
Alignment:
Q  168 ggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagccttgttttt 257  Q
    |||||||||  | |||||||  |||||||||||||||||| ||||| | ||||| ||| ||||||||||| || ||||||||||||||||    
T  41743652 ggaccaaaacataagttttattacttatgggaccaaaatgaaaacttaaaattaattaaaggaccaaatgacctattaagccttgttttt 41743741  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 38697972 - 38697865
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    ||||||| |||||||||||| |  |||||||||||||   |||||||| |||||| |||||||||||||   | ||||| |||| |||||||| |  |||    
T  38697972 tttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaagatcaa 38697873  T
Q  243 ttaagcct 250  Q
    ||||||||    
T  38697872 ttaagcct 38697865  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 39516439 - 39516510
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 141  Q
    |||||||||| ||||||| || ||| |||| || ||||| |||| |||||||||||||||||||| ||||||    
T  39516439 aatggacatgcaatcaaatggttaaaatcacatgaaaaaatttagacattaaaaaactaacggagaggatca 39516510  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 28291359 - 28291293
Alignment:
Q  183 ttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    |||||| | |||||||||||||||| ||||| ||||||| |||| ||||||||  ||||||||||||    
T  28291359 ttttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaattaagcc 28291293  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 28291401 - 28291483
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    |||||| |||||| | |||||| | ||||||||||||| || ||||| |||||||||||| |||| |||  ||||||||||||    
T  28291401 gggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttaggggactaaaaatccaattaagcc 28291483  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 22621076 - 22621136
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    |||||||||| ||||||| |  ||| |||||||||| ||||||| ||||||||||||||||    
T  22621076 aatggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaac 22621136  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 38192 - 38095
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgt-aggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    ||||||||||||| ||||| || |||| |  || |||||||||| ||| ||| || ||| ||||||||||||| |||| ||||| ||||||||||||||    
T  38192 aaaaattaggtgctgacggttcactgttaaatacaatggacatgcaattaaatggttaaaatcatatcaaaaaatttagacatt-aaaaactaacggag 38095  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 16362567 - 16362529
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  16362567 atcatatcaaaaatattagacattaaaaaactaacggag 16362529  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 36757166 - 36757232
Alignment:
Q  74 gacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatc 140  Q
    |||||| ||| ||| || ||| ||||||||||||| |||| ||||||||||||||| |||| |||||    
T  36757166 gacatgcaattaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggagaggatc 36757232  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 34616282 - 34616245
Alignment:
Q  96 atcatatcaaaaattttaaacattaaaaaactaacgga 133  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  34616282 atcatattaaaaatattaaacattaaaaaactaacgga 34616245  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 7770171 - 7770107
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||  ||||||| || ||| |||| || ||||| |||| ||||||||||||||||||||    
T  7770171 aatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggag 7770107  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 7777848 - 7777784
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 134  Q
    |||||||||  ||||||| || ||| |||| || ||||| |||| ||||||||||||||||||||    
T  7777848 aatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggag 7777784  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 35945346 - 35945438
Alignment:
Q  37 aaaaattaggtgccgacggctcgctgtaggtataatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 129  Q
    ||||||||||||  |||||  | |||||  |||||||||| || |||| || || | | |||| ||||||||| |||||||||||||||||||    
T  35945346 aaaaattaggtgttgacggtacactgtaaatataatggacctgcaatcgaatggttgaaatcacatcaaaaatattaaacattaaaaaactaa 35945438  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 11722890 - 11722784
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 242  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  11722890 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaa 11722791  T
Q  243 ttaagcc 249  Q
    |||||||    
T  11722790 ttaagcc 11722784  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 21777496 - 21777570
Alignment:
Q  143 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcata 217  Q
    ||||||||||||| |||||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||    
T  21777496 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 138176 - 138223
Alignment:
Q  101 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgac 148  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  138176 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 138223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 146197 - 146244
Alignment:
Q  101 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgac 148  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  146197 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 146244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 18242249 - 18242317
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 138  Q
    |||||||||| ||||||| || ||| || | || |||||||| | ||||||||||||||||||||||||    
T  18242249 aatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggagggga 18242317  T

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Target: scaffold2071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 717 - 799
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 249  Q
    ||||||||||  |||||||||  | |||||||||||||||| |||||   ||||| ||||||||||||||| || ||||||||    
T  717 gggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattagaggaccaaatgacctattaagcc 799  T

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Target: scaffold1251 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1121 - 1204
Alignment:
Q  167 gggaccaaaatgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 250  Q
    ||||||||||  |||||||||  |||||||||||||||||| |||||   ||||||||   |||||||||| || |||||||||    
T  1121 gggaccaaaacatgagttttattacttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaagcct 1204  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 42288 - 42348
Alignment:
Q  70 aatggacatgtaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 130  Q
    ||||||| || |||||||||| | | ||||||||||||| | |||||||||||| ||||||    
T  42288 aatggacctgcaatcaaacggttgaaatcatatcaaaaaatataaacattaaaatactaac 42348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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