View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5628_low_1 (Length: 624)

Name: NF5628_low_1
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5628_low_1
NF5628_low_1
[»] chr5 (38 HSPs)
chr5 (2-613)||(30350188-30350799)
chr5 (233-395)||(30312986-30313148)
chr5 (400-613)||(17870290-17870515)
chr5 (400-613)||(25541427-25541652)
chr5 (400-613)||(24628596-24628821)
chr5 (400-613)||(10026339-10026564)
chr5 (401-517)||(3691336-3691452)
chr5 (401-517)||(3875335-3875451)
chr5 (414-523)||(14191546-14191654)
chr5 (493-613)||(30345307-30345440)
chr5 (86-198)||(30351680-30351792)
chr5 (400-461)||(30345439-30345500)
chr5 (89-198)||(119012-119121)
chr5 (559-612)||(3691471-3691524)
chr5 (559-612)||(3875263-3875316)
chr5 (88-198)||(19353216-19353326)
chr5 (76-164)||(4187802-4187890)
chr5 (122-198)||(14626101-14626177)
chr5 (86-198)||(19352301-19352413)
chr5 (226-277)||(4395954-4396005)
chr5 (234-277)||(4396024-4396067)
chr5 (320-387)||(31066361-31066428)
chr5 (217-277)||(12883405-12883462)
chr5 (89-198)||(119937-120046)
chr5 (221-277)||(21571719-21571780)
chr5 (318-384)||(4396214-4396280)
chr5 (101-155)||(5747183-5747237)
chr5 (101-155)||(6543459-6543513)
chr5 (101-155)||(21949444-21949498)
chr5 (101-155)||(28641583-28641637)
chr5 (101-155)||(31162465-31162519)
chr5 (101-155)||(39402256-39402310)
chr5 (122-203)||(119181-119262)
chr5 (325-390)||(4898191-4898256)
chr5 (122-155)||(21949843-21949876)
chr5 (122-155)||(31588358-31588391)
chr5 (122-155)||(39402657-39402690)
chr5 (110-154)||(3878818-3878862)
[»] scaffold0002 (2 HSPs)
scaffold0002 (400-613)||(320033-320246)
scaffold0002 (400-613)||(318365-318590)
[»] chr2 (32 HSPs)
chr2 (400-613)||(3643168-3643382)
chr2 (400-613)||(24247183-24247408)
chr2 (400-613)||(24267704-24267929)
chr2 (400-613)||(27510736-27510961)
chr2 (400-536)||(27193833-27193969)
chr2 (400-536)||(27843647-27843783)
chr2 (400-523)||(35611014-35611137)
chr2 (88-206)||(10708017-10708135)
chr2 (84-198)||(10710976-10711090)
chr2 (122-198)||(2035610-2035686)
chr2 (318-366)||(3703539-3703587)
chr2 (76-204)||(44929979-44930107)
chr2 (318-391)||(21848253-21848326)
chr2 (318-360)||(2968911-2968953)
chr2 (76-198)||(44934649-44934771)
chr2 (217-277)||(2969074-2969137)
chr2 (318-366)||(12016280-12016328)
chr2 (318-390)||(37847683-37847755)
chr2 (120-155)||(3624923-3624958)
chr2 (234-277)||(3703710-3703753)
chr2 (324-383)||(22557746-22557804)
chr2 (101-155)||(1804654-1804708)
chr2 (101-155)||(6476131-6476185)
chr2 (101-155)||(11451178-11451232)
chr2 (101-155)||(27377693-27377747)
chr2 (122-155)||(1804276-1804309)
chr2 (122-155)||(6476530-6476563)
chr2 (110-147)||(34038252-34038289)
chr2 (111-155)||(2036604-2036648)
chr2 (319-391)||(12671781-12671853)
chr2 (217-277)||(22558001-22558061)
chr2 (76-164)||(23222829-23222917)
[»] scaffold0356 (2 HSPs)
scaffold0356 (400-613)||(16600-16825)
scaffold0356 (400-517)||(15789-15906)
[»] chr7 (24 HSPs)
chr7 (400-613)||(22845145-22845370)
chr7 (400-613)||(42233351-42233576)
chr7 (400-613)||(21068699-21068932)
chr7 (321-391)||(21294837-21294907)
chr7 (318-390)||(48294067-48294139)
chr7 (327-391)||(584070-584134)
chr7 (318-390)||(25173473-25173545)
chr7 (217-277)||(27399574-27399634)
chr7 (327-390)||(2842562-2842625)
chr7 (101-155)||(18443600-18443654)
chr7 (110-155)||(33848297-33848342)
chr7 (318-390)||(48767839-48767911)
chr7 (119-198)||(23548843-23548922)
chr7 (234-277)||(38975033-38975076)
chr7 (327-390)||(43786686-43786749)
chr7 (320-366)||(8055355-8055401)
chr7 (340-390)||(8352667-8352717)
chr7 (325-387)||(19735634-19735696)
chr7 (110-164)||(27311048-27311102)
chr7 (101-155)||(29783979-29784033)
chr7 (101-155)||(30939555-30939609)
chr7 (325-390)||(1964227-1964292)
chr7 (111-155)||(20543956-20544000)
chr7 (318-390)||(27399755-27399827)
[»] chr6 (17 HSPs)
chr6 (400-613)||(30882667-30882892)
chr6 (400-610)||(15334657-15334878)
chr6 (400-612)||(18857897-18858122)
chr6 (318-391)||(6812046-6812119)
chr6 (101-204)||(20227053-20227155)
chr6 (101-204)||(22121037-22121139)
chr6 (111-155)||(19595650-19595694)
chr6 (122-198)||(14712832-14712908)
chr6 (327-395)||(19687610-19687678)
chr6 (318-389)||(10373783-10373854)
chr6 (234-277)||(24326231-24326274)
chr6 (101-155)||(5974056-5974110)
chr6 (101-155)||(14257191-14257245)
chr6 (101-155)||(20824208-20824262)
chr6 (122-155)||(14257590-14257623)
chr6 (122-155)||(20522168-20522201)
chr6 (122-155)||(34984556-34984589)
[»] scaffold0262 (1 HSPs)
scaffold0262 (400-613)||(20364-20589)
[»] scaffold0029 (1 HSPs)
scaffold0029 (400-613)||(140898-141123)
[»] chr4 (44 HSPs)
chr4 (400-613)||(55557758-55557983)
chr4 (414-613)||(14146193-14146404)
chr4 (217-274)||(38067868-38067925)
chr4 (318-390)||(27064480-27064552)
chr4 (318-390)||(27085584-27085656)
chr4 (318-390)||(36904167-36904239)
chr4 (327-390)||(12191524-12191587)
chr4 (318-391)||(30482943-30483016)
chr4 (101-205)||(17287482-17287586)
chr4 (318-390)||(38068081-38068153)
chr4 (76-204)||(47058473-47058601)
chr4 (317-360)||(19853986-19854029)
chr4 (217-277)||(36903981-36904043)
chr4 (327-390)||(44991793-44991856)
chr4 (76-155)||(47053806-47053885)
chr4 (122-204)||(49426364-49426446)
chr4 (217-277)||(56228424-56228481)
chr4 (325-360)||(4711590-4711625)
chr4 (101-155)||(2669429-2669483)
chr4 (109-198)||(7164988-7165078)
chr4 (101-155)||(12922686-12922740)
chr4 (318-360)||(13665822-13665864)
chr4 (318-360)||(13678679-13678721)
chr4 (101-155)||(28957733-28957787)
chr4 (101-155)||(38026098-38026152)
chr4 (101-155)||(40841506-40841560)
chr4 (107-205)||(54168820-54168918)
chr4 (122-155)||(2669051-2669084)
chr4 (122-155)||(12108301-12108334)
chr4 (122-155)||(17288385-17288418)
chr4 (122-155)||(21235473-21235506)
chr4 (122-155)||(34129312-34129345)
chr4 (122-155)||(40841905-40841938)
chr4 (122-155)||(55347981-55348014)
chr4 (110-154)||(790326-790370)
chr4 (119-155)||(1317501-1317537)
chr4 (122-198)||(10580042-10580118)
chr4 (318-390)||(17058842-17058914)
chr4 (122-198)||(26168167-26168243)
chr4 (110-154)||(28505641-28505685)
chr4 (122-198)||(29691751-29691827)
chr4 (277-313)||(38067956-38067992)
chr4 (326-390)||(38168163-38168227)
chr4 (326-390)||(56397117-56397181)
[»] chr3 (42 HSPs)
chr3 (400-613)||(10245645-10245870)
chr3 (400-613)||(27275761-27275986)
chr3 (400-613)||(11370000-11370224)
chr3 (400-613)||(10111960-10112185)
chr3 (400-613)||(10001768-10001993)
chr3 (76-204)||(35301859-35301987)
chr3 (318-389)||(1559616-1559687)
chr3 (325-390)||(47142757-47142822)
chr3 (318-390)||(1151622-1151694)
chr3 (318-389)||(31833950-31834021)
chr3 (101-198)||(7248480-7248577)
chr3 (325-381)||(7325562-7325618)
chr3 (76-204)||(20826724-20826852)
chr3 (322-390)||(32552303-32552371)
chr3 (217-277)||(35540439-35540499)
chr3 (217-277)||(1151817-1151881)
chr3 (234-277)||(1559803-1559846)
chr3 (76-155)||(20831067-20831146)
chr3 (111-198)||(33225490-33225577)
chr3 (320-390)||(3935770-3935840)
chr3 (101-155)||(4199877-4199931)
chr3 (122-164)||(48867686-48867728)
chr3 (327-389)||(55222401-55222463)
chr3 (217-277)||(32552202-32552265)
chr3 (110-155)||(36899685-36899730)
chr3 (122-155)||(42606723-42606756)
chr3 (101-206)||(45539631-45539735)
chr3 (559-613)||(11310300-11310354)
chr3 (318-360)||(23059097-23059139)
chr3 (101-155)||(36899298-36899352)
chr3 (101-155)||(42606324-42606378)
chr3 (101-155)||(46689726-46689780)
chr3 (320-385)||(19611142-19611207)
chr3 (122-155)||(43933485-43933518)
chr3 (122-155)||(44504137-44504170)
chr3 (122-155)||(45539253-45539286)
chr3 (122-155)||(48868599-48868632)
chr3 (110-147)||(51587582-51587619)
chr3 (86-198)||(35300746-35300858)
chr3 (122-166)||(50732259-50732303)
chr3 (122-166)||(50780552-50780596)
chr3 (119-155)||(54588502-54588538)
[»] scaffold0225 (1 HSPs)
scaffold0225 (400-613)||(12928-13153)
[»] scaffold0118 (2 HSPs)
scaffold0118 (400-613)||(27353-27578)
scaffold0118 (400-613)||(24159-24385)
[»] chr1 (35 HSPs)
chr1 (400-613)||(52501931-52502156)
chr1 (3-203)||(12869548-12869747)
chr1 (394-613)||(36208572-36208802)
chr1 (400-526)||(48774116-48774242)
chr1 (400-526)||(2330528-2330655)
chr1 (101-198)||(12868435-12868532)
chr1 (318-390)||(23082422-23082494)
chr1 (327-390)||(45468009-45468072)
chr1 (318-390)||(6597455-6597527)
chr1 (327-390)||(26991801-26991864)
chr1 (318-357)||(45371196-45371235)
chr1 (327-390)||(49650119-49650182)
chr1 (559-613)||(36521243-36521297)
chr1 (101-203)||(36793565-36793667)
chr1 (325-391)||(38790604-38790670)
chr1 (217-277)||(45371010-45371073)
chr1 (122-203)||(45665953-45666034)
chr1 (122-198)||(19895575-19895651)
chr1 (327-391)||(30627159-30627223)
chr1 (318-390)||(42762259-42762331)
chr1 (122-205)||(5683573-5683656)
chr1 (317-360)||(13003907-13003950)
chr1 (100-151)||(36297540-36297591)
chr1 (175-205)||(16150927-16150957)
chr1 (101-155)||(32266527-32266581)
chr1 (101-155)||(40124120-40124174)
chr1 (101-155)||(45230552-45230606)
chr1 (101-155)||(47410845-47410899)
chr1 (101-198)||(1500972-1501069)
chr1 (122-155)||(8997385-8997418)
chr1 (322-391)||(27163079-27163148)
chr1 (325-390)||(46688785-46688849)
chr1 (122-155)||(47410467-47410500)
chr1 (122-198)||(3591176-3591252)
chr1 (234-278)||(6597219-6597263)
[»] chr8 (25 HSPs)
chr8 (400-613)||(21112378-21112603)
chr8 (452-536)||(5186954-5187038)
chr8 (122-203)||(26720318-26720399)
chr8 (318-390)||(12795967-12796039)
chr8 (221-277)||(12796162-12796218)
chr8 (217-277)||(41438232-41438295)
chr8 (318-390)||(22800602-22800674)
chr8 (78-198)||(44148579-44148699)
chr8 (320-390)||(1581482-1581552)
chr8 (318-388)||(7177089-7177159)
chr8 (321-375)||(22324346-22324400)
chr8 (110-155)||(24846007-24846052)
chr8 (217-273)||(1155750-1155806)
chr8 (86-198)||(4624362-4624474)
chr8 (320-384)||(12532360-12532424)
chr8 (122-198)||(21005961-21006037)
chr8 (122-198)||(44024400-44024476)
chr8 (101-155)||(12734217-12734271)
chr8 (101-155)||(29917149-29917203)
chr8 (120-166)||(45369132-45369178)
chr8 (122-155)||(12489273-12489306)
chr8 (122-198)||(4694444-4694520)
chr8 (122-198)||(6761501-6761577)
chr8 (111-155)||(16662213-16662257)
chr8 (122-198)||(40304686-40304762)
[»] scaffold0017 (1 HSPs)
scaffold0017 (431-613)||(187935-188129)
[»] scaffold0003 (2 HSPs)
scaffold0003 (400-517)||(184170-184287)
scaffold0003 (559-612)||(184306-184359)
[»] scaffold1139 (1 HSPs)
scaffold1139 (400-526)||(2376-2502)
[»] scaffold0134 (1 HSPs)
scaffold0134 (503-613)||(4302-4424)
[»] scaffold0148 (2 HSPs)
scaffold0148 (76-198)||(32960-33082)
scaffold0148 (76-155)||(29319-29398)
[»] scaffold0086 (1 HSPs)
scaffold0086 (318-390)||(33254-33326)
[»] scaffold0009 (2 HSPs)
scaffold0009 (122-155)||(107767-107800)
scaffold0009 (122-198)||(107897-107973)
[»] scaffold0007 (1 HSPs)
scaffold0007 (217-277)||(175415-175478)
[»] scaffold0196 (1 HSPs)
scaffold0196 (559-611)||(24271-24322)
[»] scaffold0110 (2 HSPs)
scaffold0110 (325-387)||(13673-13735)
scaffold0110 (325-387)||(21410-21472)
[»] scaffold0085 (1 HSPs)
scaffold0085 (122-155)||(39864-39897)
[»] scaffold0568 (1 HSPs)
scaffold0568 (318-390)||(775-847)


Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 2 - 613
Target Start/End: Complemental strand, 30350799 - 30350188
Alignment:
Q  2 ggtagtgatgatatatgatgaagaaaaccatgaacaggaagatgaaagtgaacaatactgttgaagcgttacagatttgagggtagggactatttgtcgt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30350799 ggtagtgatgatatatgatgaagaaaaccatgaacaggaagatgaaagtgaacaatactgttgaagcgttacagatttgagggtagggactatttgtcgt 30350700  T
Q  102 aacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcc 201  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |    
T  30350699 aacggaataaaaatataggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaacatatttaactc 30350600  T
Q  202 ttttaaataaaacgtaatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgttatgtggctgaaatttaagtttatac 301  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30350599 ttttaaataaaatgtaatgtaattcatgcaaattattattattatttaacgaaagaatgtaaaatttgtaatgttatgtggctgaaatttaagtttatac 30350500  T
Q  302 caataaataaatgaggtttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatatcaaact 401  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30350499 caataaataaatgaggtttaataaataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatatcaaact 30350400  T
Q  402 ttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacc 501  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30350399 ttattatatcctaaaaaacacatccctcgaaaacaacattgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacc 30350300  T
Q  502 cttatccctattttttattagtgaaatactattttgattttcactttaatttgaactcaagattctttactcctagctagctccaaaacctattaattat 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30350299 cttatccctattttttattagtgaaatactattttgattttcactttaatttgaactcaagattctttactcctagctagctccaaaacctattaattct 30350200  T
Q  602 tctagtgtctct 613  Q
    ||||||||||||    
T  30350199 tctagtgtctct 30350188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 233 - 395
Target Start/End: Complemental strand, 30313148 - 30312986
Alignment:
Q  233 gttattattattatttaacggaagaatgtaaaatttgtaatgttatgtggctgaaatttaagtttataccaataaataaatgaggtttaataaataaatt 332  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30313148 gttattattattatttaacgaaagaatgtaaaagttgtaatgttatgtggctgaaatttaagtttataccaataaataaatgaggtttaataaataaatt 30313049  T
Q  333 atttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatat 395  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30313048 atttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatat 30312986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 17870515 - 17870290
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17870515 ctttattatatcctaaaatacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 17870416  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||            ||||||| ||||||||||||||  |||||    
T  17870415 cccttatccctattttttattagtgaagtactattttgattctcactttaatttgaactctttggttccaccaagattatttactcctagctaagtccaa 17870316  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||| ||| |||||||||||||    
T  17870315 aacctattgattcttctagtgtctct 17870290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 25541652 - 25541427
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25541652 ctttactatatcctaaaaaacacacccctcaaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 25541553  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||||||||||||||||||| |||||    
T  25541552 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattctttactcctagctaggtccaa 25541453  T
Q  588 aacctattaattattctagtgtctct 613  Q
    || ||||||||| |||||||||||||    
T  25541452 aatctattaattcttctagtgtctct 25541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 24628821 - 24628596
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24628821 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 24628722  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  24628721 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 24628622  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||  ||||||||    
T  24628621 aacctattaattcttccggtgtctct 24628596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 10026339 - 10026564
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10026339 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 10026438  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  10026439 cccttatccctattttttattagtgaagtattgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 10026538  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| ||| |||| ||||    
T  10026539 aacctattaattcttccagtgcctct 10026564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 401 - 517
Target Start/End: Original strand, 3691336 - 3691452
Alignment:
Q  401 tttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcac 500  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3691336 tttactatatcctaaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctagatttcttaatgtgtaatagtcttcaaatgtatcac 3691435  T
Q  501 ccttatccctatttttt 517  Q
    |||||||||||||||||    
T  3691436 ccttatccctatttttt 3691452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 401 - 517
Target Start/End: Complemental strand, 3875451 - 3875335
Alignment:
Q  401 tttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcac 500  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3875451 tttactatatcctaaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctagatttcttaatgtgtaatagtcttcaaatgtatcac 3875352  T
Q  501 ccttatccctatttttt 517  Q
    |||||||||||||||||    
T  3875351 ccttatccctatttttt 3875335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 14191654 - 14191546
Alignment:
Q  414 aaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacccttatccctatt 513  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14191654 aaaaaatacacccctcgaaaacaaccttgtcatcaaggttggaatgtgccaaatttcttaatgtgtaatagt-ttcaaatgtatcacccttatccctatt 14191556  T
Q  514 ttttattagt 523  Q
    ||||||||||    
T  14191555 ttttattagt 14191546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 613
Target Start/End: Complemental strand, 30345440 - 30345307
Alignment:
Q  493 tgtatcacccttatccctatttttt-attagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagct 579  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||            ||||||| |||||||||||||    
T  30345440 tgtatcacccttatccctatttttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagct 30345341  T
Q  580 agctccaaaacctattaattattctagtgtctct 613  Q
    || ||||||||||||||||| ||| |||||||||    
T  30345340 aggtccaaaacctattaattcttccagtgtctct 30345307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 30351680 - 30351792
Alignment:
Q  86 agggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagacca 185  Q
    ||||||||||| |  ||||  ||||||||| | |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||| ||| || ||    
T  30351680 agggactatttatgctaacaaaataaaaatgtaggaattttaaaaatatttattgaaatgtagggactattctttaaaggagggtaaaatgtagggatca 30351779  T
Q  186 aaaatatatttaa 198  Q
    | || ||||||||    
T  30351780 ataacatatttaa 30351792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 30345500 - 30345439
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtg 461  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  30345500 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtg 30345439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 119121 - 119012
Alignment:
Q  89 gactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaa 188  Q
    ||||||||||  || ||||  |||||| | || |||||||||| ||||||||||||||| ||||||| | |||||||| || ||||| ||| ||||||||    
T  119121 gactatttgtgctatcggaggaaaaatgtagggattttaaaaacatttattgaaatgtaaggactatttattaaaggagggcaaaatgtagggaccaaaa 119022  T
Q  189 atatatttaa 198  Q
    | ||||||||    
T  119021 acatatttaa 119012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 612
Target Start/End: Original strand, 3691471 - 3691524
Alignment:
Q  559 caagattctttactcctagctagctccaaaacctattaattattctagtgtctc 612  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  3691471 caagattctttactcctagctaggtccaaaacctatcaattcttctagtgtctc 3691524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 612
Target Start/End: Complemental strand, 3875316 - 3875263
Alignment:
Q  559 caagattctttactcctagctagctccaaaacctattaattattctagtgtctc 612  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  3875316 caagattctttactcctagctaggtccaaaacctatcaattcttctagtgtctc 3875263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 19353216 - 19353326
Alignment:
Q  88 ggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaa 187  Q
    |||||||||||  |||||||  |||||| |  | ||||||||||  |||||||||||||| ||||||| | | ||| || || ||||||||| |||||||    
T  19353216 ggactatttgtgctaacggaggaaaaatgtatggattttaaaaacgtttattgaaatgtaaggactatttatcaaatgatggcaaaatatagggaccaaa 19353315  T
Q  188 aatatatttaa 198  Q
    |||||||||||    
T  19353316 aatatatttaa 19353326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 4187802 - 4187890
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaag 164  Q
    |||||| || |||||| | |||| |||||||||  ||||| || | |||||||||||||||||||||||||| |||||||  |||||||    
T  4187802 atttgacggcagggaccaattgtagtaacggaaagaaaatgtgaggattttaaaaatatttattgaaatgtaaggactattatttaaag 4187890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 14626101 - 14626177
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    | ||| ||||| ||||||||| ||||||||    
T  14626101 attttaaaaacatttattgaaatgtagggactattttttaaagtcgcgcaaagtatagggaccaaaaacatatttaa 14626177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 19352413 - 19352301
Alignment:
Q  86 agggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagacca 185  Q
    |||||||||||||  |||||||  |||||| |  |||||||||||| ||||||||||||||| ||||||| | | |||  | |||||||| |||  ||||    
T  19352413 agggactatttgtgctaacggaggaaaaatgtaagaattttaaaaacatttattgaaatgtaaggactatttgtcaaaaaagggtaaaatgtaggaacca 19352314  T
Q  186 aaaatatatttaa 198  Q
    |||| ||||||||    
T  19352313 aaaacatatttaa 19352301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 4395954 - 4396005
Alignment:
Q  226 catgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||| |||||||||||| |||||| | ||||||||||||||||||||||    
T  4395954 catgcaaattattattattacttaacgaaggaatgtaaaatttgtaatgtta 4396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 4396024 - 4396067
Alignment:
Q  234 ttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  4396024 ttattattattatttaacgaaggaatgtaaaatttgtaatgtta 4396067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 31066428 - 31066361
Alignment:
Q  320 taataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattgga 387  Q
    |||||||||||||| || ||| ||||||||||||||||||| ||| |  |||| ||||||||||||||    
T  31066428 taataaataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattgga 31066361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 12883462 - 12883405
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||||||||   ||||||||||||||||| |  |||||||||||||||||||||    
T  12883462 aatgtaattcatgcaa---attattattatttaacgaagaaatgtaaaatttgtaatgtta 12883405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 119937 - 120046
Alignment:
Q  89 gactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaa 188  Q
    ||||||||||  |||||||  |||||| |  | |||||||||| ||||||||||||||| ||||||| | | |||| | || ||||| ||| ||||||||    
T  119937 gactatttgtgctaacggaggaaaaatgtaaggattttaaaaacatttattgaaatgtaaggactatttgtcaaagaagggcaaaatgtagggaccaaaa 120036  T
Q  189 atatatttaa 198  Q
    | ||||||||    
T  120037 acatatttaa 120046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 21571780 - 21571719
Alignment:
Q  221 taattcatgcaagttattattattatt-----taacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||| ||||||||||||||     ||||| ||||||||||||||||||||||||    
T  21571780 taattcatgcaaattattattattattatatttaacgaaagaatgtaaaatttgtaatgtta 21571719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 4396214 - 4396280
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcatt 384  Q
    |||||||||||||||| || | | ||||||||||||||||||| | |||  |||| |||||||||||    
T  4396214 tttaataaataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcatt 4396280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 5747183 - 5747237
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  5747183 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 5747237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 6543513 - 6543459
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  6543513 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 6543459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 21949498 - 21949444
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  21949498 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 21949444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 28641583 - 28641637
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  28641583 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 28641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 31162519 - 31162465
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  31162519 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 31162465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 39402310 - 39402256
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  39402310 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 39402256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 119262 - 119181
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcctt 203  Q
    |||||||||| ||||||||||||||| |||||||  |||||||  | | ||||| ||  ||||||||| |||||||| ||||    
T  119262 attttaaaaacatttattgaaatgtaaggactattctttaaagtcacgcaaaatctaaggaccaaaaacatatttaaccctt 119181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 4898191 - 4898256
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||| ||| |||| |||||||| ||||||||| |  |||| || ||||||||||||||    
T  4898191 aataaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagtc 4898256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 21949843 - 21949876
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  21949843 attttaaaaacatttattgaaatgtagggactat 21949876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 31588358 - 31588391
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||||||| |||||||||||||||||    
T  31588358 attttaaaaatatttaatgaaatgtagggactat 31588391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 39402657 - 39402690
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||||||||||||||||| |||||||    
T  39402657 attttaaaaatatttattgaaatgtaaggactat 39402690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 3878862 - 3878818
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggacta 154  Q
    |||||||| || |||||||||| ||||||||||||||| ||||||    
T  3878862 aaaaatatagggattttaaaaacatttattgaaatgtaaggacta 3878818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 320246 - 320033
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  320246 ctttattatatccaaaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 320147  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaactcaagattctttactcctagctagctccaaaacctattaatt 599  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  320146 cccttatccctattttttattagtgaaatactattttgattctcactttaatttgaactcaagattctttactcctagctagctccaaaacctattaatt 320047  T
Q  600 attctagtgtctct 613  Q
     |||||||||||||    
T  320046 cttctagtgtctct 320033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 318590 - 318365
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  318590 ctttattatatcctaaaaaacacacccctcgaaaacaaccttgttatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 318491  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||| |||||||| |||||||||||||| |||| |||||||| |||||||||||||||||            ||||||||||||||||||||||| || ||    
T  318490 cccatatccctactttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattctttactcctagctaggtctaa 318391  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  318390 aacctattaattcttctagtgtctct 318365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 3643168 - 3643382
Alignment:
Q  400 ctttattatatcctaaaaaa-cacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatc 498  Q
    ||||| |||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3643168 ctttactatatcctaaaaaaacacacccctcgaaaacaaccttctcatcaaggttggaatgtgctaaattttttaatgtgtaatagtcttcaaatgtatc 3643267  T
Q  499 acccttatccctattttttattagtgaaatactattttgattttcactttaatttgaactcaagattctttactcctagctagctccaaaacctattaat 598  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643268 acccttatccctatttttaattagtgaaatactattttgattttcacttaaatttgaactcaagattctttactcctagctagctccaaaacctattaat 3643367  T
Q  599 tattctagtgtctct 613  Q
    | ||||| |||||||    
T  3643368 tcttctaatgtctct 3643382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 24247183 - 24247408
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24247183 ctttactatatcctaaaaaacacacccatcgaaaataaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 24247282  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaac------------tcaagattctttactcctagctagctccaa 587  Q
    |||||||||||| |||||||||||||| || | |||||||| ||||||||||||||||            ||||||||||||||||||||| || |||||    
T  24247283 cccttatccctaatttttattagtgaagtattgttttgattctcactttaatttgaactgtttggttccatcaagattctttactcctagcaaggtccaa 24247382  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  24247383 aacctattaattcttctagtgtctct 24247408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 24267929 - 24267704
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24267929 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 24267830  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  24267829 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 24267730  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||  ||||||||    
T  24267729 aacctattaattcttccggtgtctct 24267704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 27510736 - 27510961
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| ||||||| |||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510736 ctttactatatcccaaaaaatacacccctcgaaaacaaacttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 27510835  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    |||||| |||||||||||||||||||| || | |||||||| ||||||||||||||| |            |||||||||||| |||||||||| |||||    
T  27510836 cccttaaccctattttttattagtgaagtattgttttgattctcactttaatttgaaatctttgggtccaccaagattctttagtcctagctaggtccaa 27510935  T
Q  588 aacctattaattattctagtgtctct 613  Q
    | |||||||||| |||||||||||||    
T  27510936 accctattaattcttctagtgtctct 27510961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 400 - 536
Target Start/End: Original strand, 27193833 - 27193969
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  27193833 ctttactatatcataaaaaacacaccccttgaaaagaaccttgtcatcaaggttggaatgcgctaaatttcttaatgtgtaataatcttcaaatgtatca 27193932  T
Q  500 cccttatccctattttttattagtgaaatactatttt 536  Q
    ||||| ||||||||||||||||||||| |||| ||||    
T  27193933 cccttgtccctattttttattagtgaagtactgtttt 27193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 400 - 536
Target Start/End: Original strand, 27843647 - 27843783
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  27843647 ctttactatatcataaaaaacacaccccttgaaaagaaccttgtcatcaaggttggaatgcgctaaatttcttaatgtgtaataatcttcaaatgtatca 27843746  T
Q  500 cccttatccctattttttattagtgaaatactatttt 536  Q
    ||||| ||||||||||||||||||||| |||| ||||    
T  27843747 cccttgtccctattttttattagtgaagtactgtttt 27843783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 400 - 523
Target Start/End: Original strand, 35611014 - 35611137
Alignment:
Q  400 ctttattatatcctaaaaaa-cacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatc 498  Q
    ||||| |||||||||||||| |||| | || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  35611014 ctttactatatcctaaaaaaacacacctctcgaaaacaaccttgtcatcaaggttggaatgtgccaaatttcttaatgtgtaatagt-ttcaaatgtatc 35611112  T
Q  499 acccttatccctattttttattagt 523  Q
    |||||||||||||||||||||||||    
T  35611113 acccttatccctattttttattagt 35611137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 10708135 - 10708017
Alignment:
Q  88 ggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaa 187  Q
    |||||||||||  |||||||  |||||| | ||||||||||||| ||||||||||||||| ||||||| | | ||| || || ||||| ||| |||||||    
T  10708135 ggactatttgtgctaacggatgaaaaatgtaggaattttaaaaacatttattgaaatgtaaggactatttgtcaaaagagggcaaaatgtagggaccaaa 10708036  T
Q  188 aatatatttaatcctttta 206  Q
    || |||||||| |||||||    
T  10708035 aacatatttaaccctttta 10708017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 10710976 - 10711090
Alignment:
Q  84 gtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagac 183  Q
    |||||||||||||||  ||||||   |||||| |  | |||||||||||||||| | ||||||| ||||||| |||||||| || ||||||||||| |||    
T  10710976 gtagggactatttgtgctaacgggggaaaaatgtaaggattttaaaaatatttactaaaatgtaaggactattttttaaagaaaagtaaaatatagggac 10711075  T
Q  184 caaaaatatatttaa 198  Q
    |||||| ||||||||    
T  10711076 caaaaacatatttaa 10711090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 2035686 - 2035610
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||| ||||||||||| |||  |||||| || |||||||||||| ||||||||| ||||||||    
T  2035686 attttaaaaacatttattaaaatgtagggattattctttaaaagagggtaaaatatagggaccaaaaacatatttaa 2035610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 3703587 - 3703539
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacct 366  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  3703587 tttaataaataaattatttttgtttaatgatgtaaagttagtgggacct 3703539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 44930107 - 44929979
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaat 175  Q
    |||||| || |||||||||||||  |||||||  |||||| | || |||||||||||||||||||||||||| |||||||   |||||   ||  |||||    
T  44930107 atttgacggcagggactatttgtgctaacggataaaaaatgtagggattttaaaaatatttattgaaatgtaaggactattaattaaaatgagaaaaaat 44930008  T
Q  176 atagagaccaaaaatatatttaatccttt 204  Q
     ||| ||||||||| |||||||| |||||    
T  44930007 gtagggaccaaaaacatatttaacccttt 44929979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 21848326 - 21848253
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||| |||||  |||| || |||| ||||||||||    
T  21848326 tttaataaataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtct 21848253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 2968953 - 2968911
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  2968953 tttaaaaaataaattatttttgtttaatgatgtaaagttagtg 2968911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 44934649 - 44934771
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaat 175  Q
    |||||| || |||||||||||||  | |||||  |||||| | || |||||||||| ||||||||||||||| |||||||   |||||   ||| |||||    
T  44934649 atttgacggcagggactatttgtgctgacggatgaaaaatgtagggattttaaaaacatttattgaaatgtaaggactattaattaaaatgaggaaaaat 44934748  T
Q  176 atagagaccaaaaatatatttaa 198  Q
     ||| ||||||||| ||||||||    
T  44934749 gtagggaccaaaaacatatttaa 44934771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 2969137 - 2969074
Alignment:
Q  217 aatgtaattcatgcaagttattattattattt---aacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||||| || |||||||||||||||   |||| | ||||||||||||||||||||||    
T  2969137 aatgtaattcatgtaaattattattattattttttaacgaaggaatgtaaaatttgtaatgtta 2969074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 12016280 - 12016328
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacct 366  Q
    |||||||||||||||| ||  || |||||||||||||||||||||||||    
T  12016280 tttaataaataaattactttagtataatgatgtaaagttagtgagacct 12016328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 37847683 - 37847755
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||| |||||||||||| ||||||| |||||||||| |||| | |||  |||| ||||||||||| |||||    
T  37847683 tttaatgaataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtc 37847755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 3624923 - 3624958
Alignment:
Q  120 gaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||| |||||||||||||||||||||||    
T  3624923 gaattttaaaaacatttattgaaatgtagggactat 3624958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 3703753 - 3703710
Alignment:
Q  234 ttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||    
T  3703753 ttattattattttttaacgaaggaatgtaaaatttgtaatgtta 3703710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 22557804 - 22557746
Alignment:
Q  324 aaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcat 383  Q
    ||||||||||||| |||||||||||||||||||| ||  ||||  |||||||||||||||    
T  22557804 aaataaattattt-tgtttaatgatgtaaagttaatgtaacctatttaaatatttttcat 22557746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 1804654 - 1804708
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  1804654 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 1804708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 6476185 - 6476131
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  6476185 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 6476131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 11451178 - 11451232
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  11451178 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 11451232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 27377747 - 27377693
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  27377747 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 27377693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 1804309 - 1804276
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  1804309 attttaaaaacatttattgaaatgtagggactat 1804276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 6476530 - 6476563
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  6476530 attttaaaaacatttattgaaatgtagggactat 6476563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 34038252 - 34038289
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgta 147  Q
    |||||| | |||||||||||||||||||||||||||||    
T  34038252 aaaaatgtaggaattttaaaaatatttattgaaatgta 34038289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 2036604 - 2036648
Alignment:
Q  111 aaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||| || |||||||||| ||| |||||||||||||||||||    
T  2036604 aaaatatagggattttaaaaacattaattgaaatgtagggactat 2036648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 12671781 - 12671853
Alignment:
Q  319 ttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    ||||||||||||| | || ||| |||| |||||||||||||  |||    |||||||||||||||||||||||    
T  12671781 ttaataaataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtct 12671853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 22558061 - 22558001
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| | ||||||||| |||||   | |||||||||||||||| |||||    
T  22558061 aatgtaattcatgcaaatcattattattttttaataaaggaatgtaaaatttgtattgtta 22558001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 23222829 - 23222917
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaag 164  Q
    |||||| || |||||| | |||| |||||||||  ||||| || | |||||||||| || |||||||||||| |||||||  |||||||    
T  23222829 atttgacggcagggaccaattgtagtaacggaaagaaaatgtgaggattttaaaaacatatattgaaatgtaaggactattatttaaag 23222917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 16825 - 16600
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16825 ctttattatatcctaaaaaacacacccgtcgaaaacaaccttgtcaacaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 16726  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||            ||||||||||||||||||| ||| |||||    
T  16725 cccttatccctattttttattagtgaagtactattttgattctcactttaatttgaactctttggttccaccaagattctttactcctagttaggtccaa 16626  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  16625 aacctattaattcttctagtgtctct 16600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 15906 - 15789
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||| | | || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15906 ctttactatatcctaaaaaacaaaccgctcgaaaacaaccttgtcatcaaggttggcatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 15807  T
Q  500 cccttatccctatttttt 517  Q
    ||||||||||||||||||    
T  15806 cccttatccctatttttt 15789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 22845145 - 22845370
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22845145 ctttattatatcctaaaatacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 22845244  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||            ||||||||||||||||||||||  |||||    
T  22845245 cccttatccctattttttattagtgaagtactattttgattctcactttaatttgaactctttggttccaccaagattctttactcctagctaagtccaa 22845344  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||| ||| |||||||||||||    
T  22845345 aacctattgattcttctagtgtctct 22845370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 42233351 - 42233576
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42233351 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 42233450  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  42233451 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 42233550  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| ||| |||||||||    
T  42233551 aacctattaattcttccagtgtctct 42233576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 21068932 - 21068699
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgt--------gctaaatttcttaatgtgtaatagtcttcaa 491  Q
    ||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||    
T  21068932 ctttactataccctaaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaaggttgcaatttgctaaatttcttaatgtgtaatagtcttcaa 21068833  T
Q  492 atgtatcacccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagct 579  Q
    ||| |||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||            |||||||||||||||||||||    
T  21068832 atgcatcacccttatccctattttttaaaagtgaaatactgttttgattctcactttaatttgaactccttggttctaccaagattctttactcctagct 21068733  T
Q  580 agctccaaaacctattaattattctagtgtctct 613  Q
    || ||||||||||||||||| |||||||||||||    
T  21068732 aggtccaaaacctattaattcttctagtgtctct 21068699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 21294837 - 21294907
Alignment:
Q  321 aataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |  |||||||||||| ||||||||||    
T  21294837 aataaataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtct 21294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 48294139 - 48294067
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||| ||| ||||||||||    
T  48294139 tttaataaataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtc 48294067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 584070 - 584134
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| || |||||||||||||||    
T  584070 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtct 584134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 25173473 - 25173545
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||||||| || ||| |||||||||||| ||||||||||||  |||| || |||||||| |||||    
T  25173473 tttaataaataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtc 25173545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 27399574 - 27399634
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| ||||||||||| ||||||  | ||| ||||||||||||||||||    
T  27399574 aatgtaattcatgcaaattattattattttttaacaaaggaacgtaaaatttgtaatgtta 27399634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 2842562 - 2842625
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| |||||||||||||| || ||||| ||| |  ||||||||||||||||||||||    
T  2842562 taaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtc 2842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 18443600 - 18443654
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||||| || |||||||||| |||||||||||||||||||||||    
T  18443600 taacggaggaaaaatatagggattttaaaaacatttattgaaatgtagggactat 18443654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 33848297 - 33848342
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||    
T  33848297 aaaaatgtaggaattttaaaaacatttattgaaatgtagggactat 33848342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 48767839 - 48767911
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||| |||| || ||| ||||||||||||||||||||||| |  ||||  | ||||||||||||||    
T  48767839 tttaataaatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtc 48767911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 23548843 - 23548922
Alignment:
Q  119 ggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||||| ||||||||||||| || | ||||| || |||||  | | ||||| ||| ||||||||||||||||||    
T  23548843 ggaattttaaaagtatttattgaaatataagaactattttctaaagtcacgcaaaatgtagggaccaaaaatatatttaa 23548922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 38975076 - 38975033
Alignment:
Q  234 ttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||||||||||| | |||| |||||||||||||||||    
T  38975076 ttattattattatttaacgaaggaatataaaatttgtaatgtta 38975033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 43786686 - 43786749
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| || ||||| ||||||||    
T  43786686 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtc 43786749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 8055401 - 8055355
Alignment:
Q  320 taataaataaattatttgtgtttaatgatgtaaagttagtgagacct 366  Q
    |||||||||||||| || | | |||||||||||||||||||||||||    
T  8055401 taataaataaattacttttatgtaatgatgtaaagttagtgagacct 8055355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 8352667 - 8352717
Alignment:
Q  340 tttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||||||||| |  |||| |||||||||||| ||||    
T  8352667 tttaatgatgtaaagttagtgagacttatttaagtatttttcattgaagtc 8352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 19735634 - 19735696
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattgga 387  Q
    |||||||||||| ||| ||||||| |||||||||||||||||  |||| || |||| ||||||    
T  19735634 aataaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattgga 19735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 27311048 - 27311102
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaag 164  Q
    |||||| | ||||||||||||| ||||| |||||||||||||||||  |||||||    
T  27311048 aaaaatgtaggaattttaaaaacatttaatgaaatgtagggactattctttaaag 27311102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 29784033 - 29783979
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | ||||||||||||| |||||||||||| ||||||||||    
T  29784033 taacggagaaaaaatgtaggaattttaaaaacatttattgaaatatagggactat 29783979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 30939555 - 30939609
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||| | |||||| | || |||||||||||||||| |||||||||||||||||    
T  30939555 taacggtagaaaaatgtagggattttaaaaatatttaatgaaatgtagggactat 30939609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 1964292 - 1964227
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||| | | ||||||||||||||||||| || ||  ||||||| |||| |||||||||    
T  1964292 aataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 20544000 - 20543956
Alignment:
Q  111 aaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||| | |||||||||| ||||| |||||||||||||||||    
T  20544000 aaaatatgaggattttaaaaaaatttaatgaaatgtagggactat 20543956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 27399755 - 27399827
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||||||| || ||  ||||||||||||| |||||  ||||  |||| || ||||||||||||||    
T  27399755 tttaataaataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtc 27399827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 30882667 - 30882892
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30882667 ctttattatatcctaaaatacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 30882766  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||            ||||||||||||||||||||||  |||||    
T  30882767 cccttatccctattttttattagtgaagtactattttgattctcactttaatttgaactctttggttccaccaagattctttactcctagctaagtccaa 30882866  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||| ||| |||||||||||||    
T  30882867 aacctattgattcttctagtgtctct 30882892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 400 - 610
Target Start/End: Original strand, 15334657 - 15334878
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| ||||||||||||| |||| |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15334657 ctttactatatcctaaaaa-cacacccctcgaaaacaaccttgccatcaaggttagaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 15334755  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  15334756 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattatttactcctagctaggtccaa 15334855  T
Q  588 aacctattaattattctagtgtc 610  Q
    || ||||||||| ||| ||||||    
T  15334856 aaactattaattcttcaagtgtc 15334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 400 - 612
Target Start/End: Original strand, 18857897 - 18858122
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaa-caaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatc 498  Q
    ||||| |||||||||||||| ||| |||| ||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  18857897 ctttactatatcctaaaaaatacacccctcgaaaaacaaacttgtcatcaaggtttgaatgtactaaatttcttaatgtgtaatagtcttcaaatgtatc 18857996  T
Q  499 acccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctcca 586  Q
    ||||||||||||||||||||||||||||  ||| |||||||| |||||||||||||||||            ||||||||||||||||||| ||| ||||    
T  18857997 acccttatccctattttttattagtgaagaactcttttgattctcactttaatttgaactttttgggtccaccaagattctttactcctagataggtcca 18858096  T
Q  587 aaacctattaattattctagtgtctc 612  Q
    ||||||||||||| ||||||| ||||    
T  18858097 aaacctattaattcttctagtttctc 18858122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 6812046 - 6812119
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    ||||||||||||||||||| ||| |||||||||||||||||||  ||||  |||| || |||||||||||||||    
T  6812046 tttaataaataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtct 6812119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 20227155 - 20227053
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatc 200  Q
    |||||||  |||||||| |||||||||||||||||||||||||| |||| ||||| | | |||     | |||||||||||| |||||||||||||||||    
T  20227155 taacggagaaaaaatataggaattttaaaaatatttattgaaatataggaactat-tctcaaaatcgcgcaaaatatagagagcaaaaatatatttaatc 20227057  T
Q  201 cttt 204  Q
    ||||    
T  20227056 cttt 20227053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 22121139 - 22121037
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatc 200  Q
    |||||||  |||||||| |||||||||||||||||||||||||| |||| ||||| | | |||     | |||||||||||| |||||||||||||||||    
T  22121139 taacggagaaaaaatataggaattttaaaaatatttattgaaatataggaactat-tctcaaaatcgcgcaaaatatagagagcaaaaatatatttaatc 22121041  T
Q  201 cttt 204  Q
    ||||    
T  22121040 cttt 22121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 19595650 - 19595694
Alignment:
Q  111 aaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  19595650 aaaatatagggattttaaaaatatttattgaaatgtagggactat 19595694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 14712908 - 14712832
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||  | | ||||| ||| ||||||||| ||||||||    
T  14712908 attttaaaaacatttattgaaatgtaaggactatttttcaaagtgacgcaaaatgtagggaccaaaaacatatttaa 14712832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 19687610 - 19687678
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatat 395  Q
    |||||||||| ||||||||||||||||| || || ||| |  |||| || |||||||||||||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtctatat 19687678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 10373854 - 10373783
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagt 389  Q
    |||||||| ||||||| || ||| ||| |||||||||||||||||||||  ||||| | |||||||| ||||    
T  10373854 tttaataattaaattacttttgtataacgatgtaaagttagtgagacctatttaaacacttttcattagagt 10373783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 24326231 - 24326274
Alignment:
Q  234 ttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||    
T  24326231 ttattattattttttaacgaaggaatgtaaaatttgtaatgtta 24326274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 5974110 - 5974056
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||||  ||||| |||| |||||||||| ||||| |||||||||||||||||    
T  5974110 taacggaaataaaatgtggggattttaaaaacatttaatgaaatgtagggactat 5974056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 14257245 - 14257191
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  14257245 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 14257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 20824262 - 20824208
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  20824262 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 20824208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 14257590 - 14257623
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  14257590 attttaaaaacatttattgaaatgtagggactat 14257623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 20522168 - 20522201
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  20522168 attttaaaaacatttattgaaatgtagggactat 20522201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 34984556 - 34984589
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  34984556 attttaaaaacatttattgaaatgtagggactat 34984589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 20364 - 20589
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20364 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 20463  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  20464 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 20563  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| ||| |||||||||    
T  20564 aacctattaattcttccagtgtctct 20589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 141123 - 140898
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  141123 ctttattatatcctaaaaaacacacccctcgaaaacaaccttgttatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 141024  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||| |||||||| |||||||||||||| |||| |||||||| |||||||||||||||||            ||||||||||||||||||||||| || ||    
T  141023 cccatatccctactttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattctttactcctagctaggtctaa 140924  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  140923 aacctattaattcttctagtgtctct 140898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 55557983 - 55557758
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55557983 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 55557884  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  55557883 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 55557784  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| ||| |||||||||    
T  55557783 aacctattaattcttccagtgtctct 55557758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 414 - 613
Target Start/End: Complemental strand, 14146404 - 14146193
Alignment:
Q  414 aaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacccttatccctatt 513  Q
    |||||||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14146404 aaaaaacacacctctcgaaaacaaccttgtcatcaaggttggaatgtgttaaatttcttaatgtgtaatagtcttcaaatgtatcacccttatccctatt 14146305  T
Q  514 ttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaaaacctattaattat 601  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||            ||||||||||||||| ||||||| ||||||| ||||||||| |    
T  14146304 ttttattagtgaagtactattttgattctcattttaatttgaactctttggttccaccaagattctttactcttagctaggtccaaaatctattaattct 14146205  T
Q  602 tctagtgtctct 613  Q
    ||||||||||||    
T  14146204 tctagtgtctct 14146193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 38067868 - 38067925
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatg 274  Q
    |||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||    
T  38067868 aatgtaattcatgcaaattattattattttttaacgaatgaatgtaaaatttgtaatg 38067925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 27064552 - 27064480
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| |  ||||| | |||| |||||||||    
T  27064552 tttaataaataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtc 27064480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 27085656 - 27085584
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| |  ||||| | |||| |||||||||    
T  27085656 tttaataaataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtc 27085584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 36904167 - 36904239
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||| |||||||||||||||||||||||   |||  |||| ||||||||| |||||||    
T  36904167 tttaataaataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtc 36904239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 12191524 - 12191587
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| |||||||||||||||||    
T  12191524 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtc 12191587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 30483016 - 30482943
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    |||||| ||||||||| || ||| |||||||||||||||| || |||||  |||||||||||| ||||||||||    
T  30483016 tttaattaataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtct 30482943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 17287586 - 17287482
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatc 200  Q
    ||||||||  ||||| | ||||||||||||||||||||||||||||| |||||||  ||||||| |  | ||||| ||| ||| || || |||||||| |    
T  17287586 taacggaagtaaaatgtaggaattttaaaaatatttattgaaatgtaaggactattatttaaagtagcgcaaaatgtagggactaataacatatttaacc 17287487  T
Q  201 ctttt 205  Q
    |||||    
T  17287486 ctttt 17287482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 38068081 - 38068153
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||| |||||||||||||| ||||||||||||||||||||||| | |||  |||| || |||| |||||||||    
T  38068081 tttagtaaataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtc 38068153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 47058473 - 47058601
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaat 175  Q
    |||||| || |||||||||||||  |||||||  |||||| | || |||||||||| |||||||||||||||  ||||||   |||||   ||| |||||    
T  47058473 atttgacggcagggactatttgtgctaacggataaaaaatgtagggattttaaaaacatttattgaaatgtaaagactattaattaaaatgaggcaaaat 47058572  T
Q  176 atagagaccaaaaatatatttaatccttt 204  Q
     ||| ||||||||| |||||||| |||||    
T  47058573 gtagggaccaaaaacatatttaacccttt 47058601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 19853986 - 19854029
Alignment:
Q  317 gtttaataaataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  19853986 gtttaataaataaattatttttgtttgatgatgtaaagttagtg 19854029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 36903981 - 36904043
Alignment:
Q  217 aatgtaattcatgcaagttattattatta--tttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| ||||||||||||  ||||||| | | ||||||||||||||||||||    
T  36903981 aatgtaattcatgcaaattattattattatttttaacgaaggtatgtaaaatttgtaatgtta 36904043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 44991856 - 44991793
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| ||||||||||||||||| ||||| ||| |  |||| |||||||||||||||||    
T  44991856 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattggagtc 44991793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 47053885 - 47053806
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||| || |||||||||||||  |||||||  |||||| | || |||||||||| ||||||||||||||| |||||||    
T  47053885 atttgacggcagggactatttgtgctaacggatgaaaaatgtagggattttaaaaacatttattgaaatgtaaggactat 47053806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 49426364 - 49426446
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatccttt 204  Q
    |||||||||||||||||||||||||| |||||||  ||||||| |  | ||||| ||| ||| ||||| |||||||| |||||    
T  49426364 attttaaaaatatttattgaaatgtaaggactattatttaaagtagagcaaaatgtagggacaaaaaacatatttaacccttt 49426446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 56228481 - 56228424
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||| |||   ||||||||||||||||| | ||||||||||||||||||||||    
T  56228481 aatgtaattcatacaa---attattattatttaacgaatgaatgtaaaatttgtaatgtta 56228424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 4711590 - 4711625
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    |||||||||||| |||||||||||||||||||||||    
T  4711590 aataaattatttttgtttaatgatgtaaagttagtg 4711625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 2669429 - 2669483
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  2669429 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 2669483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 7164988 - 7165078
Alignment:
Q  109 taaaaatatgggaattttaaaaatatttattga-aatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    ||||||| ||||||||||||||| |||||| || |||||| ||| ||| | | |||| | || ||||| ||||||||||||| ||||||||    
T  7164988 taaaaatgtgggaattttaaaaacatttatcgacaatgtaaggattatttctcaaagaagggcaaaatgtagagaccaaaaacatatttaa 7165078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 12922740 - 12922686
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  12922740 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 12922686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 13665864 - 13665822
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    |||||| |||||||||||| |||||||||||| ||||||||||    
T  13665864 tttaattaataaattatttttgtttaatgatgcaaagttagtg 13665822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 13678721 - 13678679
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    |||||| |||||||||||| |||||||||||| ||||||||||    
T  13678721 tttaattaataaattatttttgtttaatgatgcaaagttagtg 13678679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 28957733 - 28957787
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  28957733 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 28957787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 38026098 - 38026152
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  38026098 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 38026152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 40841560 - 40841506
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  40841560 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 40841506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 54168820 - 54168918
Alignment:
Q  107 aataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcctttt 205  Q
    ||||||||| | || |||||||||||||||||| ||||||||||| |||  || ||||  | | ||||||||| ||  ||||| |||||||| ||||||    
T  54168820 aataaaaatgtagggattttaaaaatatttattaaaatgtagggattattcttcaaagtcacgcaaaatatagggattaaaaacatatttaaccctttt 54168918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 2669084 - 2669051
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  2669084 attttaaaaacatttattgaaatgtagggactat 2669051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 12108301 - 12108334
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  12108301 attttaaaaacatttattgaaatgtagggactat 12108334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 17288385 - 17288418
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  17288385 attttaaaaacatttattgaaatgtagggactat 17288418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 21235473 - 21235506
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  21235473 attttaaaaacatttattgaaatgtagggactat 21235506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 34129312 - 34129345
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||||||| |||||||||||||||||    
T  34129312 attttaaaaatatttaatgaaatgtagggactat 34129345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 40841905 - 40841938
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  40841905 attttaaaaacatttattgaaatgtagggactat 40841938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 55347981 - 55348014
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  55347981 attttaaaaacatttattgaaatgtagggactat 55348014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 790326 - 790370
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggacta 154  Q
    |||||| | ||||||||||||| ||||||||||||||| ||||||    
T  790326 aaaaatgtaggaattttaaaaacatttattgaaatgtaaggacta 790370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 1317501 - 1317537
Alignment:
Q  119 ggaattttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  1317501 ggaattttaaaaacattcattgaaatgtagggactat 1317537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 10580118 - 10580042
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||  | | ||||| ||  ||||||||| ||||||||    
T  10580118 attttaaaaacatttattgaaatgtaaggactatttttcaaagtcacgcaaaatgtatggaccaaaaacatatttaa 10580042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 17058914 - 17058842
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||| | ||||| ||||||||||||||||| ||||| | |||  |||| || |||||||| |||||    
T  17058914 tttaataaatacaatatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtc 17058842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 26168243 - 26168167
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||| | ||||||| || ||||| || | ||||| ||| || |||||| ||||||||    
T  26168243 attttaaaaacatttattgaaatgcaaggactattttctaaagtaacgcaaaatgtagggatcaaaaacatatttaa 26168167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 28505641 - 28505685
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggacta 154  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||    
T  28505641 aaaaatatagggattttaaaaacatttattaaaatgtagggacta 28505685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 29691751 - 29691827
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| |||||||||||||||  |||||| ||||||||  | | ||||| ||  ||||||||| ||||||||    
T  29691751 attttaaaaacatttattgaaatgtaaagactattttttaaagtcacgcaaaatgtaaggaccaaaaacatatttaa 29691827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 38067956 - 38067992
Alignment:
Q  277 atgtggctgaaatttaagtttataccaataaataaat 313  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  38067956 atgtggcagaaatttaagtttatacgaataaataaat 38067992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 38168227 - 38168163
Alignment:
Q  326 ataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||| |||||||||||||||| |||||| | | |  |||| || ||||||||||||||    
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtc 38168163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 56397181 - 56397117
Alignment:
Q  326 ataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||| ||| |||||||||||||||| ||| || |  |||| |||||||||||| ||||    
T  56397181 ataaattatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcattgaagtc 56397117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 10245645 - 10245870
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  10245645 ctttactatatcctaaaaaacacaccccttgaaaacaaccctgtcatcaaggttggaatgtgttaaatttcttaatgtgtaatagtcttcatatgtatca 10245744  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    |||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  10245745 cccttatccctaatttttattagtgaagtactgttttgattctcactttaatttgaactatttggttccaccaagattttttactcctagctaggtccaa 10245844  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  10245845 aacctattaattcttctagtgtctct 10245870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 27275761 - 27275986
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27275761 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 27275860  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  27275861 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 27275960  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| ||| |||||||||    
T  27275961 aacctattaattcttccagtgtctct 27275986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 11370000 - 11370224
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11370000 ctttactatatccttaaaaacacacccctcgaaaacaaccttgacatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 11370099  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaa-ct----------caagattctttactcctagctagctccaaa 588  Q
    |||||||||||| |||||| ||||||| || | |||||||| ||||||||||||||| ||          ||||||||||||||||||||||| ||||||    
T  11370100 cccttatccctaatttttaatagtgaagtattgttttgattctcactttaatttgaatctttggttccaccaagattctttactcctagctaggtccaaa 11370199  T
Q  589 acctattaattattctagtgtctct 613  Q
    ||||||||||| |||||||||||||    
T  11370200 acctattaattcttctagtgtctct 11370224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 10111960 - 10112185
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| | || |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  10111960 ctttactatatcctaaaaaacacacctctcgaaaacaaccctgtcatcaaggttggaatgtgttaaatttcttaatgtgtaatagtcttcatatgtatca 10112059  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    |||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||            ||||||  ||||||||||||||| |||||    
T  10112060 cccttatccctaatttttattagtgaagtactgttttgattctcactttaatttgaactatttggttccaccaagatattttactcctagctaggtccaa 10112159  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  10112160 aacctattaattcttctagtgtctct 10112185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 10001768 - 10001993
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |    
T  10001768 ctttactatatcctaaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgttaaatttcttaatgtgtaatagtcttcatatgtatga 10001867  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    |||||||||||| ||||||| |||||| || | |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  10001868 cccttatccctaatttttataagtgaagtattgttttgattctcactttaatttgaactatttggttccaccaagattttttactcctagctaggtccaa 10001967  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| ||||||| |||||    
T  10001968 aacctattaattcttctagtttctct 10001993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 35301859 - 35301987
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaat 175  Q
    |||||| || |||||||||||||  |||| ||  |||||||| |||||||||||||||||||| ||||| || |||| || | | |||||| ||||||||    
T  35301859 atttgacggcagggactatttgtgctaactgagaaaaaatataggaattttaaaaatatttatcgaaatataaggaccatttgtcaaaggagggtaaaat 35301958  T
Q  176 atagagaccaaaaatatatttaatccttt 204  Q
     ||  |||||| || ||||||||||||||    
T  35301959 gtaaggaccaataacatatttaatccttt 35301987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 1559687 - 1559616
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagt 389  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  1559687 tttaataaataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagt 1559616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 47142757 - 47142822
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||| || ||||||||||||||    
T  47142757 aataaattatttttgtttagtgatgtaaagttagtgagacctatttaagtagttttcattggagtc 47142822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 1151694 - 1151622
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | |||  |||| || |||| |||||||||    
T  1151694 tttaataaataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtc 1151622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 31833950 - 31834021
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagt 389  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || ||  |||| ||||||| ||| ||||    
T  31833950 tttaataaataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagt 31834021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 7248480 - 7248577
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||| | |||||| | || |||||||||||||||||| ||||||  ||||||| ||||||||| ||||||||| ||| ||  ||||| ||||||||    
T  7248480 taacggcagaaaaatgtagggattttaaaaatatttattaaaatgtgaggactattttttaaagggaggtaaaatgtagggattaaaaacatatttaa 7248577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 7325618 - 7325562
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttc 381  Q
    |||||||||||| ||||||||||||||||||||||||||  |  |||||||||||||    
T  7325618 aataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatatttttc 7325562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 20826852 - 20826724
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaat 175  Q
    |||||| || |||||||||||||  | |||||  |||||| | || |||||||||| ||||||||||||||| |||||||   |||||   ||| |||||    
T  20826852 atttgacggcagggactatttgtgctgacggatgaaaaatgtagggattttaaaaacatttattgaaatgtaaggactattaattaaaatgaggaaaaat 20826753  T
Q  176 atagagaccaaaaatatatttaatccttt 204  Q
     ||| ||||||||| |||||||| |||||    
T  20826752 gtagggaccaaaaacatatttaacccttt 20826724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 32552303 - 32552371
Alignment:
Q  322 ataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||| || ||| |||||||||||||||||||| || |||||  |||| |||||||||||||||||    
T  32552303 ataaataatttttttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtc 32552371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 35540499 - 35540439
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| |||||||| || || || | ||||||||||||||||||||||||    
T  35540499 aatgtaattcatgcaaattattattttttttaaatgaaagaatgtaaaatttgtaatgtta 35540439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 1151881 - 1151817
Alignment:
Q  217 aatgtaattcatgcaagttattattattattt----aacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||| |||||| |||||||||||||||    |||| ||||||||||||||||||||||||    
T  1151881 aatgtaattaatgcaaattattattattatttttttaacgaaagaatgtaaaatttgtaatgtta 1151817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 1559846 - 1559803
Alignment:
Q  234 ttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  1559846 ttattattattatttaacgaaggaatgtaaaatttgtaatgtta 1559803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 20831067 - 20831146
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||| || |||||||||||||  |||||||  |||||| | || |||||||||| ||||||||||||||| |||||||    
T  20831067 atttgacggcagggactatttgtgctaacggataaaaaatgtagggattttaaaaacatttattgaaatgtaaggactat 20831146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 33225577 - 33225490
Alignment:
Q  111 aaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    ||||| |||| |||||||||| ||||| | ||||||||||||||| | | ||||||  ||||||| ||||||| ||||| ||||||||    
T  33225577 aaaatgtggggattttaaaaacatttacttaaatgtagggactatttatcaaaggagcgtaaaatgtagagactaaaaacatatttaa 33225490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 3935840 - 3935770
Alignment:
Q  320 taataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||| ||||||||||| ||||||||||||||||| || |||||| |  |||| || ||||||||||||||    
T  3935840 taatagataaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtc 3935770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 4199877 - 4199931
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||||| || |||||||||| |||||||||||||||||||||||    
T  4199877 taacggaggaaaaatatagggattttaaaaacatttattgaaatgtagggactat 4199931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 48867728 - 48867686
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaag 164  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  48867728 attttaaaaatatttattgaaatgtagggactattatttaaag 48867686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 55222401 - 55222463
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagt 389  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| || |||||||||||||    
T  55222401 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagt 55222463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 32552202 - 32552265
Alignment:
Q  217 aatgtaattcatgcaagttat---tattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| ||||   ||||||| ||||||| | ||||||||||||||||||||||    
T  32552202 aatgtaattcatgcaaattattattattattttttaacgaaggaatgtaaaatttgtaatgtta 32552265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 36899685 - 36899730
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||| || |||||||||| |||||||||||||||||||||||    
T  36899685 aaaaatatagggattttaaaaacatttattgaaatgtagggactat 36899730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 42606723 - 42606756
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||||||||||||||||||||||||||||||    
T  42606723 attttaaaaatatttattgaaatgtagggactat 42606756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 45539631 - 45539735
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatc 200  Q
    |||||||  |||||| | || |||||||||| ||||||||||||||||||||||| | |||||     ||||||| ||| ||||||||| |||||||| |    
T  45539631 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat-tcttaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 45539729  T
Q  201 ctttta 206  Q
    ||||||    
T  45539730 ctttta 45539735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 613
Target Start/End: Complemental strand, 11310354 - 11310300
Alignment:
Q  559 caagattctttactcctagctagctccaaaacctattaattattctagtgtctct 613  Q
    ||||||||||||||||||||||| | ||||| | ||||||| | |||||||||||    
T  11310354 caagattctttactcctagctaggttcaaaatcaattaattctcctagtgtctct 11310300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 23059097 - 23059139
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    |||||| |||||||||||| |||||||||||| ||||||||||    
T  23059097 tttaattaataaattatttttgtttaatgatgcaaagttagtg 23059139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 36899352 - 36899298
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  36899352 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 36899298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 42606378 - 42606324
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  42606378 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 42606324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 46689780 - 46689726
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  46689780 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 46689726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 19611142 - 19611207
Alignment:
Q  320 taataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattg 385  Q
    |||||| |||||||||| ||||||||||||||||| ||||| ||| |  |||| || |||||||||    
T  19611142 taataagtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattg 19611207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 43933518 - 43933485
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||||||| |||||||||||||||||    
T  43933518 attttaaaaatatttaatgaaatgtagggactat 43933485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 44504170 - 44504137
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||||||| |||||||||||||||||    
T  44504170 attttaaaaatatttaatgaaatgtagggactat 44504137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 45539286 - 45539253
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  45539286 attttaaaaacatttattgaaatgtagggactat 45539253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 48868599 - 48868632
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  48868599 attttaaaaacatttattgaaatgtagggactat 48868632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 51587619 - 51587582
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgta 147  Q
    |||||||| || ||||||||||||||||||||||||||    
T  51587619 aaaaatatagggattttaaaaatatttattgaaatgta 51587582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 35300858 - 35300746
Alignment:
Q  86 agggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagacca 185  Q
    |||||| ||||||  |||||||  |||||| | || |||||||||| ||||||||||||||| ||| ||| | | | || | | |||||| ||| |||||    
T  35300858 agggaccatttgtgctaacggatgaaaaatgtagggattttaaaaacatttattgaaatgtaaggattatttgtcagagaatgataaaatgtagggacca 35300759  T
Q  186 aaaatatatttaa 198  Q
    |||| ||||||||    
T  35300758 aaaacatatttaa 35300746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 50732303 - 50732259
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaagga 166  Q
    |||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  50732303 attttaaaaatatttaatgaaatgtatggactatttttcaaagga 50732259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 50780552 - 50780596
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaagga 166  Q
    |||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  50780552 attttaaaaatatttaatgaaatgtatggactatttttcaaagga 50780596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 54588538 - 54588502
Alignment:
Q  119 ggaattttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  54588538 ggaattttaaaaacatttattgaaatgtatggactat 54588502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 133; Significance: 8e-69; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 13153 - 12928
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    |||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  13153 ctttattataccctgaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtgtca 13054  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    |||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||            ||||||||||||||||||||||| || ||    
T  13053 cccttatccctactttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattctttactcctagctaggtctaa 12954  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||||||||||||    
T  12953 aacctattaattcttctagtgtctct 12928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 133; Significance: 8e-69; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 27578 - 27353
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27578 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 27479  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  27478 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 27379  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||  ||||||||    
T  27378 aacctattaattcttccggtgtctct 27353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 24385 - 24159
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  24385 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtataatagtcttcatatgtatca 24286  T
Q  500 cccttatccctatt-ttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctcca 586  Q
    |||||||||||||| ||||||||||||| |||| |||||||| |||| ||||||||||||            ||||||| ||||||||||| ||| ||||    
T  24285 cccttatccctatttttttattagtgaagtactgttttgattctcaccttaatttgaactctttggttccaccaagattttttactcctagttaggtcca 24186  T
Q  587 aaacctattaattattctagtgtctct 613  Q
    ||||||||||||| ||| | |||||||    
T  24185 aaacctattaattcttccactgtctct 24159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 8e-69; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 400 - 613
Target Start/End: Original strand, 52501931 - 52502156
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52501931 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcatatgtatca 52502030  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  52502031 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 52502130  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||  ||||||||    
T  52502131 aacctattaattcttccggtgtctct 52502156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 12869548 - 12869747
Alignment:
Q  3 gtagtgatgatatatgatgaagaaaaccatgaacaggaagatgaaagtgaacaatactgttgaagcgttacagatttgagggtagggactatttgtcgta 102  Q
    |||||| || ||| |||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |||| || |||||||||||||| ||    
T  12869548 gtagtggtggtatctgatgaagaaaagcatgaacaagaagatgaaagtaaacaatattgttgaagcgttacagaattgacgggagggactatttgtccta 12869647  T
Q  103 acggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcct 202  Q
    ||||| ||||||| |||| |||||||||| |||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||| |||||||| |||    
T  12869648 acggagtaaaaatttggg-attttaaaaacatttattgaaatgtagggactattctttaaaggagggtaaaatatagggaccaaaaacatatttaaccct 12869746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 394 - 613
Target Start/End: Original strand, 36208572 - 36208802
Alignment:
Q  394 atcaaactttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaat 493  Q
    ||||| ||||| |||||||||||||||||| |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  36208572 atcaacctttactatatcctaaaaaacacacccctcgaaaacaaccttgtggtcaaggttggaatctgctaaatttattaatgtgtaatagtcttcaaat 36208671  T
Q  494 gtatcacccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctag 581  Q
    ||||||||||||||| || |||||||||||||| |||| |||||||| |||||||||||||||||            ||| |||||||||| ||| ||||    
T  36208672 gtatcacccttatcctta-tttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaaaattctttacttctaactag 36208770  T
Q  582 ctccaaaacctattaattattctagtgtctct 613  Q
      |||||||||||||||| |||||||||||||    
T  36208771 gcccaaaacctattaattcttctagtgtctct 36208802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 400 - 526
Target Start/End: Complemental strand, 48774242 - 48774116
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  48774242 ctttactatatcctaaaaaacacacctctcgaaaacaaccttgtcatcaaggttggaatgtgctagatttcttaatgtgtaatagtcttcaaatgtatcg 48774143  T
Q  500 cccttatccctattttttattagtgaa 526  Q
    |||||||||||||||||||||||||||    
T  48774142 cccttatccctattttttattagtgaa 48774116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 2330528 - 2330655
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2330528 ctttactatatcctaaaaaacacacccctcgaaaacaaccttgtgatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatta 2330627  T
Q  500 cccttatcccta-ttttttattagtgaa 526  Q
    |||||||||||| |||||||||||||||    
T  2330628 cccttatccctatttttttattagtgaa 2330655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 12868532 - 12868435
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| |||| | || |||||||||||||||||||||||||||| |||||  ||||||||| |||||||| ||| |||||| || ||||||||    
T  12868532 taacggaatataaatgtagggattttaaaaatatttattgaaatgtaggaactattctttaaaggagggtaaaatgtagggaccaataacatatttaa 12868435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 23082422 - 23082494
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||   ||  |||| |||||||||||||||||    
T  23082422 tttaataaataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtc 23082494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 45468072 - 45468009
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| ||||||||||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  45468072 taaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtc 45468009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 6597455 - 6597527
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||||| | || ||| |||||||||||||||||||  ||||  ||||||||| ||||||||||||    
T  6597455 tttaataaataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtc 6597527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 26991864 - 26991801
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| || ||||||||||||||    
T  26991864 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtc 26991801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 45371196 - 45371235
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagtta 357  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  45371196 tttaataaataaattatttttgtttaatgatgtaaagtta 45371235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 49650119 - 49650182
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| || ||||||||||||||    
T  49650119 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtc 49650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 613
Target Start/End: Original strand, 36521243 - 36521297
Alignment:
Q  559 caagattctttactcctagctagctccaaaacctattaattattctagtgtctct 613  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||  ||||||||    
T  36521243 caagattttttactcctagctaggtccaaaacctattaattcttccggtgtctct 36521297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 36793565 - 36793667
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatc 200  Q
    ||||||||||||||| | || |||||||||| ||||||| |||||||| ||||||  || ||||  | | ||||||||| ||| ||||| |||||||| |    
T  36793565 taacggaataaaaatgtagggattttaaaaacatttattaaaatgtagagactattcttcaaagtcacgcaaaatatagggactaaaaacatatttaacc 36793664  T
Q  201 ctt 203  Q
    |||    
T  36793665 ctt 36793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 38790670 - 38790604
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    ||||||||| || ||| ||||||||||||||||||||||| |  ||||  |||||||||||||||||    
T  38790670 aataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtct 38790604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 45371010 - 45371073
Alignment:
Q  217 aatgtaattcatgcaagttattattatta---tttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| ||||||||||||   ||||||| |  |||||||||||||||||||||    
T  45371010 aatgtaattcatgcaaattattattattattttttaacgaagaaatgtaaaatttgtaatgtta 45371073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 45665953 - 45666034
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcctt 203  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||||    ||||| ||| |||||| || |||||||||||||    
T  45665953 attttaaaaatatttattgaaacgtaagaactattttttaaaggagcacaaaatgtagggaccaataacatatttaatcctt 45666034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 19895651 - 19895575
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||| |  |||||| ||| ||||  | | ||||||||||||||||||| ||||||||    
T  19895651 attttaaaaacatttattgaaatgcaaagactatttttcaaagtcacgcaaaatatagagaccaaaaacatatttaa 19895575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 30627223 - 30627159
Alignment:
Q  327 taaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    |||||||||| ||||||||||||||||| ||||| ||| |  |||| ||||||||||| ||||||    
T  30627223 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtct 30627159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 42762259 - 42762331
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||||||| || ||| ||||||| |||| |||||| ||| |  ||||||||||||||||| ||||    
T  42762259 tttaataaataaattacttttgtataatgatataaaattagtgtgacttatttaaatatttttcattgcagtc 42762331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 5683573 - 5683656
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcctttt 205  Q
    |||||||||||||||| |||||||||||||||||  || |||   | ||||||||||  ||| ||||| |||||||| ||||||    
T  5683573 attttaaaaatatttaatgaaatgtagggactattcttcaaaaagacgtaaaatataaggactaaaaacatatttaaccctttt 5683656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 13003950 - 13003907
Alignment:
Q  317 gtttaataaataaattatttgtgtttaatgatgtaaagttagtg 360  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||    
T  13003950 gtttaataaataaattatttttgtttaatgatgcaaaattagtg 13003907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 36297540 - 36297591
Alignment:
Q  100 gtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtaggga 151  Q
    ||||||||  |||||||| | ||||||||||||||||||| |||||||||||    
T  36297540 gtaacggaggaaaaatatagaaattttaaaaatatttattaaaatgtaggga 36297591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 16150957 - 16150927
Alignment:
Q  175 tatagagaccaaaaatatatttaatcctttt 205  Q
    |||||||||||||||||||||||||||||||    
T  16150957 tatagagaccaaaaatatatttaatcctttt 16150927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 32266581 - 32266527
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  32266581 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 32266527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 40124174 - 40124120
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  40124174 taacggaggaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 40124120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 45230552 - 45230606
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||||| || |||||||||| ||| |||||||||||||||||||    
T  45230552 taacggagaaaaaatatagggattttaaaaacattcattgaaatgtagggactat 45230606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 47410845 - 47410899
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  47410845 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 47410899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 1500972 - 1501069
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||| | |||||| | || |||||||||| ||||| |||||||||||||||||  || ||| ||  | ||||||||| ||| ||||| ||||||||    
T  1500972 taacggtagaaaaatgtagggattttaaaaacatttaatgaaatgtagggactattcttcaaaagagcgcaaaatatagggactaaaaacatatttaa 1501069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 8997418 - 8997385
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  8997418 attttaaaaacatttattgaaatgtagggactat 8997385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 27163148 - 27163079
Alignment:
Q  322 ataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtct 391  Q
    |||||||||||| || ||| |||| ||||||||||||||  ||||  ||||  |||||||||||||||||    
T  27163148 ataaataaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtct 27163079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 46688849 - 46688785
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||| ||| ||||||||||||||||||| | |||  |||| || ||||||||||||||    
T  46688849 aataaattatttttgtataatgatgtaaagttagtg-ggcctatttaagtacttttcattggagtc 46688785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 47410500 - 47410467
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  47410500 attttaaaaacatttattgaaatgtagggactat 47410467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 3591176 - 3591252
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||  | | | ||| ||| ||||||||| ||||||||    
T  3591176 attttaaaaacatttattgaaatgtaaggactatttttcaaagtcacgcacaatgtagggaccaaaaacatatttaa 3591252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 6597219 - 6597263
Alignment:
Q  234 ttattattattatttaacggaagaatgtaaaatttgtaatgttat 278  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||    
T  6597219 ttattattattatttaacgaagaaatgtaaaatttgtaacgttat 6597263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 21112603 - 21112378
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  21112603 ctttactatatcctaaaaaacacacccctcgaaaacaaccctgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcatcatatgtatca 21112504  T
Q  500 cccttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaa 587  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||            ||||||| ||||||||||||||| |||||    
T  21112503 cccttatccctattttttattagtgaagtactgttttgattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaa 21112404  T
Q  588 aacctattaattattctagtgtctct 613  Q
    |||||||||||| |||  ||||||||    
T  21112403 aacctattaattcttccggtgtctct 21112378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 452 - 536
Target Start/End: Original strand, 5186954 - 5187038
Alignment:
Q  452 ttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacccttatccctattttttattagtgaaatactatttt 536  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||    
T  5186954 ttggaatgtgctaaatttcttcatgtgtaatagtcttcaaatgtatcacccttatcccaattttttgttagtgaagtactctttt 5187038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 26720399 - 26720318
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaatcctt 203  Q
    |||||||||||||||| |||||||||||||||||  || ||||||  | ||||| ||| ||| |||||||||||||||||||    
T  26720399 attttaaaaatatttaatgaaatgtagggactattcttcaaaggagcgcaaaatgtagggactaaaaatatatttaatcctt 26720318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 12796039 - 12795967
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| | |||  |||| || ||||||||||||||    
T  12796039 tttaataaagaaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtc 12795967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 12796218 - 12796162
Alignment:
Q  221 taattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    ||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  12796218 taatttatgcaaattattattattatttaacgaaggaatgtaaaatttgtaatgtta 12796162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 41438232 - 41438295
Alignment:
Q  217 aatgtaattcatgcaagttattattattattt---aacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| |||||||||||||||   |||| | ||||||||||||||||||||||    
T  41438232 aatgtaattcatgcaaattattattattatttttcaacgaaggaatgtaaaatttgtaatgtta 41438295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 22800674 - 22800602
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||||||||||| || ||| ||||||||||||||||||| |||||  |||| ||  |||||||||||||    
T  22800674 tttaataaataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtc 22800602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 44148699 - 44148579
Alignment:
Q  78 ttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatat 177  Q
    |||| |||||||||||||| |  ||||||| ||||||| || | ||||||||||  |||||| |||||||||||||||  || ||| ||  ||||||| |    
T  44148699 ttgacggtagggactatttttgataacggagtaaaaatgtgaggattttaaaaacgtttattaaaatgtagggactattcttcaaaagagcgtaaaatgt 44148600  T
Q  178 agagaccaaaaatatatttaa 198  Q
    || ||| ||||| ||||||||    
T  44148599 agggactaaaaacatatttaa 44148579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 1581482 - 1581552
Alignment:
Q  320 taataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||| |||||||||| ||||||||||||||||| ||||| ||| |  |||| || ||||||||||||||    
T  1581482 taataagtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattggagtc 1581552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 7177159 - 7177089
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggag 388  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||| ||| |  |||| || ||||||||||||    
T  7177159 tttaataaataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggag 7177089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 22324346 - 22324400
Alignment:
Q  321 aataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaata 375  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||  |||||||    
T  22324346 aataaataaataatttttgtataatgatgtaaagttagtgagacctacttaaata 22324400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 24846052 - 24846007
Alignment:
Q  110 aaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||    
T  24846052 aaaaatataggaattttaaaaacatttattgaaatgtaaggactat 24846007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 1155806 - 1155750
Alignment:
Q  217 aatgtaattcatgcaagttattattattatttaacggaagaatgtaaaatttgtaat 273  Q
    |||||||||||||||  ||||||||||| ||||| | | ||||||||||||||||||    
T  1155806 aatgtaattcatgcatattattattattttttaatgaaggaatgtaaaatttgtaat 1155750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 4624474 - 4624362
Alignment:
Q  86 agggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagacca 185  Q
    |||||||||||||  |||||||  |||||| | || |||||||||| |||||||||||||||  ||| || | | |||||| || ||||| |||  ||||    
T  4624474 agggactatttgtgctaacggaggaaaaatgtagggattttaaaaacatttattgaaatgtaaagacgatttgtcaaaggagggaaaaatgtaggcacca 4624375  T
Q  186 aaaatatatttaa 198  Q
    |||| ||||||||    
T  4624374 aaaacatatttaa 4624362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 12532424 - 12532360
Alignment:
Q  320 taataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcatt 384  Q
    |||||| |||||||||| ||||||||||||||||| ||||| ||| || |||| || ||||||||    
T  12532424 taataagtaaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcatt 12532360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 21005961 - 21006037
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||  | | ||||| ||| ||||||||| ||||||||    
T  21005961 attttaaaaacatttattgaaatgtaaggactatttttcaaagccacgcaaaatgtagggaccaaaaacatatttaa 21006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 44024476 - 44024400
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||  | | ||||| ||  ||||||||| ||||||||    
T  44024476 attttaaaaatatttattgaaatgtaaggactatttttcaaagtcacgcaaaatgtaaggaccaaaaacatatttaa 44024400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 12734271 - 12734217
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||||||| |||||||||||||||||||    
T  12734271 taacggagaaaaaatgtagggattttaaaaatattcattgaaatgtagggactat 12734217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 29917203 - 29917149
Alignment:
Q  101 taacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||  |||||| | || |||||||||| |||||||||||||||||||||||    
T  29917203 taacggagaaaaaatgtagggattttaaaaacatttattgaaatgtagggactat 29917149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 45369132 - 45369178
Alignment:
Q  120 gaattttaaaaatatttattgaaatgtagggactatattttaaagga 166  Q
    |||||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  45369132 gaattttaaaaacatttattgaaatgtaaggattattttttaaagga 45369178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 12489306 - 12489273
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||||||||| |||||||||||||||||    
T  12489306 attttaaaaatatttaatgaaatgtagggactat 12489273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 4694444 - 4694520
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||| | ||||||||||||||| | | ||| ||  ||||||||||| ||| ||||| ||||||||    
T  4694444 attttaaaaacatttacttaaatgtagggactatttatcaaaagagcgtaaaatatagggactaaaaacatatttaa 4694520  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 6761501 - 6761577
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    ||||||||||| | ||||||| |||||| ||||   ||||||||   ||||||||||| |||||| |||||||||||    
T  6761501 attttaaaaatctatattgaattgtaggaactaatctttaaaggggcgtaaaatatagggaccaataatatatttaa 6761577  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 16662257 - 16662213
Alignment:
Q  111 aaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    ||||| || |||||||||||| ||||| |||||||||||||||||    
T  16662257 aaaatgtgagaattttaaaaacatttaatgaaatgtagggactat 16662213  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 40304762 - 40304686
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||||||||| | ||||||| ||||||| | | ||||||  | ||||| ||| ||| ||||||||||||||    
T  40304762 attttaaaaatatttacttaaatgtatggactatttatcaaaggagtgcaaaatgtagggactaaaaatatatttaa 40304686  T

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Target: scaffold0017 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 431 - 613
Target Start/End: Original strand, 187935 - 188129
Alignment:
Q  431 aaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacccttatccctattttttattagtgaaatac 530  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  187935 aaaacaaccatgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatcacccttatccctattttttattagtgaagtac 188034  T
Q  531 tattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaaaacctattaattattctagtgtctct 613  Q
    | |||||||| |||||||||||||||||            ||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  188035 tgttttgattctcactttaatttgaactctttggttccaccaaaattctttaatcctagctaggtccaaaacctattaattcttctagtgtctct 188129  T

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Target: scaffold0003 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 184170 - 184287
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  184170 ctttactatatcctaaaaaacacacccctcgaaaacaaccttgtcatcaaggttggaatgtgctagatttcttaatgtgtaatagtcttcaaatgtatca 184269  T
Q  500 cccttatccctatttttt 517  Q
    ||||||||||||||||||    
T  184270 cccttatccctatttttt 184287  T

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Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 612
Target Start/End: Original strand, 184306 - 184359
Alignment:
Q  559 caagattctttactcctagctagctccaaaacctattaattattctagtgtctc 612  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  184306 caagattctttactcctagctaggtccaaaacctatcaattcttctagtgtctc 184359  T

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Target: scaffold1139 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 2376 - 2502
Alignment:
Q  400 ctttattatatcctaaaaaacacatcccttgaaaacaaccttgtcatcaaggttggaatgtgctaaatttcttaatgtgtaatagtcttcaaatgtatca 499  Q
    ||||| ||||||||||| |||||| |||| |||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||    
T  2376 ctttactatatcctaaagaacacacccctcgaaaacaaccttttcatcaaggttgaaatgtgctaaatttcttcatgtgcaatagtattcaaatgtatca 2475  T
Q  500 cccttatccctattttttattagtgaa 526  Q
    |||||||||||||||||||||||||||    
T  2476 cccttatccctattttttattagtgaa 2502  T

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Target: scaffold0134 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 4424 - 4302
Alignment:
Q  503 ttatccctattttttattagtgaaatactattttgattttcactttaatttgaact------------caagattctttactcctagctagctccaaaac 590  Q
    |||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||            ||||||| ||||||||||||||| ||||||||    
T  4424 ttatccctattttttattagtgaagtactgtttttattctcactttaatttgaactctttggttccaccaagattttttactcctagctaggtccaaaac 4325  T
Q  591 ctattaattattctagtgtctct 613  Q
    |||||| || |||||||||||||    
T  4324 ctattatttcttctagtgtctct 4302  T

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Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 32960 - 33082
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaat 175  Q
    |||||| || |||||||||||||  |||||||  |||||| | || |||||||||| ||||||||||||||| |||||||   |||||   ||| |||||    
T  32960 atttgacggcagggactatttgtgctaacggataaaaaatgtagggattttaaaaacatttattgaaatgtaaggactattaattaaaatgaggcaaaat 33059  T
Q  176 atagagaccaaaaatatatttaa 198  Q
     ||| ||||||||| ||||||||    
T  33060 gtagggaccaaaaacatatttaa 33082  T

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Target: scaffold0148; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 29398 - 29319
Alignment:
Q  76 atttgagggtagggactatttgtcgtaacggaataaaaatatgggaattttaaaaatatttattgaaatgtagggactat 155  Q
    |||||| || |||||||||||||  |||||||  |||||| | || |||||||||| ||||||||||||||| |||||||    
T  29398 atttgacggcagggactatttgtgctaacggatgaaaaatgtagggattttaaaaacatttattgaaatgtaaggactat 29319  T

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Target: scaffold0086 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 33326 - 33254
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    |||||||| |||||||||| | ||||||||||||||| |||||||||||  |||| || ||||||||| ||||    
T  33326 tttaataattaaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtc 33254  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 107800 - 107767
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    ||||||||||||||||||||||||||||||||||    
T  107800 attttaaaaatatttattgaaatgtagggactat 107767  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 107973 - 107897
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactatattttaaaggaaggtaaaatatagagaccaaaaatatatttaa 198  Q
    |||||||||| ||||||||||||||| ||||||| ||| |||   | | ||||| ||| ||||||||| ||||||||    
T  107973 attttaaaaacatttattgaaatgtaaggactatttttcaaaatcacggaaaatgtagggaccaaaaacatatttaa 107897  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 175415 - 175478
Alignment:
Q  217 aatgtaattcatgcaagttat---tattattatttaacggaagaatgtaaaatttgtaatgtta 277  Q
    |||||||||||||||| ||||   ||||||| ||||||| | ||||||||||||||||||||||    
T  175415 aatgtaattcatgcaaattattattattattttttaacgaaggaatgtaaaatttgtaatgtta 175478  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 611
Target Start/End: Original strand, 24271 - 24322
Alignment:
Q  559 caagattctttactcctagctagctccaaaacctattaattattctagtgtct 611  Q
    ||||||||||||||||||||||| ||||||| ||||||||||  |||||||||    
T  24271 caagattctttactcctagctagttccaaaa-ctattaattaccctagtgtct 24322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 13673 - 13735
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattgga 387  Q
    |||| ||||||| | | ||||||||||||||||||| |||||  ||||||||||| |||||||    
T  13673 aatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattgga 13735  T

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Target: scaffold0110; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 21410 - 21472
Alignment:
Q  325 aataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattgga 387  Q
    |||| ||||||| | | ||||||||||||||||||| |||||  ||||||||||| |||||||    
T  21410 aatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattgga 21472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 39864 - 39897
Alignment:
Q  122 attttaaaaatatttattgaaatgtagggactat 155  Q
    |||||||||| |||||||||||||||||||||||    
T  39864 attttaaaaacatttattgaaatgtagggactat 39897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 847 - 775
Alignment:
Q  318 tttaataaataaattatttgtgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 390  Q
    ||||||||||| | ||||| ||||||||||||||||| ||||| | |||  |||| || |||||||| |||||    
T  847 tttaataaatacaatatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtc 775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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