View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628_low_10 (Length: 260)
Name: NF5628_low_10
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 42125443 - 42125699
Alignment:
| Q |
4 |
agatggacatcatcaccaattgacattaactcggggtttgaaactggattgattgctctaatggaacaatgcttaccaattttggcaccgataaggcgta |
103 |
Q |
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| T |
42125443 |
agatgaacaccatcaccaattaacattaactcggggtttgaaactggattgattgctctaatggaacaatgcttaccaattttggcaccaataaggcgta |
42125542 |
T |
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| Q |
104 |
agtatacgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgtttg |
203 |
Q |
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| T |
42125543 |
agtatacgcagaaggcttctgttcctgagagaagctttgcaaatttaaggtggcaggaaagaatcatttggttttgaagccaggttttgaagtgtgtttg |
42125642 |
T |
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| Q |
204 |
cttttgacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagacc |
260 |
Q |
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| T |
42125643 |
cttttgacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagacc |
42125699 |
T |
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Back To:
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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 24928738 - 24928896
Alignment:
| Q |
3 |
gagatggacatcatcaccaattgacattaactcggggtttgaaactggattgattgctctaatggaacaatgcttaccaattttggcaccgataaggcgt |
102 |
Q |
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|||||||||| | ||||||||||||||| ||| || ||||||||||| ||||| |||| ||||| |||||||| |||||||| || || | |||||| |
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| T |
24928738 |
gagatggacaccggcaccaattgacattagctctggatttgaaactgggttgatggctcggatggagcaatgcttgccaatttttgcgcctaaaaggcgc |
24928837 |
T |
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| Q |
103 |
aagtatacgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcagga |
161 |
Q |
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| T |
24928838 |
aaatatacgcagaaggcttctgttcctgagagaagcttagcacatctaaggtggcagga |
24928896 |
T |
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