View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628_low_13 (Length: 228)
Name: NF5628_low_13
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628_low_13 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 102562 - 102773
Alignment:
| Q |
1 |
aattaattaggctctaagctatttgtgtctcttaaattgttttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102562 |
aattaattaggctctaagctatttgtgtctcttaaattgttatagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaat |
102661 |
T |
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| Q |
101 |
caaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactactaattaaactttcatta |
200 |
Q |
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| T |
102662 |
caaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactactaattaaactttcatta |
102761 |
T |
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| Q |
201 |
ttttattttgtc |
212 |
Q |
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|||||||||||| |
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| T |
102762 |
ttttattttgtc |
102773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 100631 - 100758
Alignment:
| Q |
41 |
tttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctgg |
140 |
Q |
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||||||||||||| ||||||||||||||| | |||||||| ||||| || || || |||||||| |||||||| ||||||||||||||||| ||| |||| |
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| T |
100631 |
tttagacatgtgagtcagcagttcaactgcgcaaggctggaaaagtcacagtcagagaatcaaatttgaagaaattaggtgccactcatttcaaaactgg |
100730 |
T |
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| Q |
141 |
tgtaaaagatgagcattttgaggtaata |
168 |
Q |
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|||| ||||||| ||||||||||||||| |
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| T |
100731 |
tgtacaagatgaacattttgaggtaata |
100758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 25847654 - 25847515
Alignment:
| Q |
43 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
142 |
Q |
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| T |
25847654 |
tagacatgtgaatcagcagttcaactacgtaaggctggtaaagtcactgttagagaatcaaacttgaaaaagttaggtgccactcatttcaaaactggtg |
25847555 |
T |
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| Q |
143 |
taaaagatgagcattttgaggtaatactaacatactacta |
182 |
Q |
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| T |
25847554 |
taaaagatgagcattttgaggtaatactaacatactacta |
25847515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 25849594 - 25849471
Alignment:
| Q |
43 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
142 |
Q |
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||||||||||||||||||||||| ||| | |||||||| ||||| | || || |||||||| |||||||||||||||||||||||||| ||| |||||| |
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| T |
25849594 |
tagacatgtgaatcagcagttcagctgcgtaaggctggtaaagtcagagtgagagaatcaaatttgaagaagttaggtgccactcatttcaaaactggtg |
25849495 |
T |
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| Q |
143 |
taaaagatgagcattttgaggtaa |
166 |
Q |
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| T |
25849494 |
tgcaagatgaacattttgaggtaa |
25849471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 25845303 - 25845181
Alignment:
| Q |
43 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
142 |
Q |
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|||||||||||||||||||||||| || | || | || ||||| || || || ||||||| |||||| || |||||||| | |||||||||| ||||| |
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| T |
25845303 |
tagacatgtgaatcagcagttcaattgcgaaaatccggtaaagttacggtcagagaatcaagcttgaaaaaattaggtgctaaccattttaaatatggtg |
25845204 |
T |
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| Q |
143 |
taaaagatgagcattttgaggta |
165 |
Q |
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|| ||| ||||||||||||||| |
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| T |
25845203 |
tagtagacgagcattttgaggta |
25845181 |
T |
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