View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5628_low_2 (Length: 483)

Name: NF5628_low_2
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5628_low_2
NF5628_low_2
[»] chr8 (3 HSPs)
chr8 (251-472)||(6495095-6495320)
chr8 (17-100)||(14935680-14935763)
chr8 (102-158)||(6494990-6495048)
[»] chr4 (3 HSPs)
chr4 (17-100)||(1062030-1062113)
chr4 (34-100)||(31606015-31606081)
chr4 (34-100)||(31954085-31954151)
[»] chr5 (2 HSPs)
chr5 (17-96)||(34024300-34024379)
chr5 (34-100)||(12633055-12633121)
[»] chr6 (4 HSPs)
chr6 (17-94)||(34977280-34977357)
chr6 (34-100)||(26125103-26125170)
chr6 (34-100)||(25571870-25571937)
chr6 (34-100)||(26006338-26006405)
[»] chr1 (2 HSPs)
chr1 (17-100)||(20087557-20087640)
chr1 (34-100)||(45291677-45291743)
[»] chr2 (1 HSPs)
chr2 (34-100)||(23362923-23362990)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 251 - 472
Target Start/End: Original strand, 6495095 - 6495320
Alignment:
Q  251 aaactgaagaggctcgtatattcaacattgctttaaacgtcacttgcttttaaaaattattgaatcagtcatgtgtacagaaaagtaattttataaataa 350  Q
    |||| |||||||||| ||||||||||||| |||||||||| | || |||||||||||||||| ||||||| |||||| | |||||||| ||||| |||||    
T  6495095 aaaccgaagaggctcatatattcaacattactttaaacgtgatttacttttaaaaattattggatcagtcgtgtgtatacaaaagtaa-tttattaataa 6495193  T
Q  351 tagtt-acacaaaaagtatattgtataaactaat---tacacaaccaatcttcctaaaaagtgaaatatgcaacaagtgcttat-aaaggaagggaggaa 445  Q
    ||||| ||||| ||| |||||| |||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6495194 tagttaacacacaaaatatattatatatactaattactacacaaccaatcttcctaaaaagtgaaatatgcaacaagtgcttataaaagcaagggaggaa 6495293  T
Q  446 gtatgatctaggtagaattaattgatg 472  Q
    |||| ||||||| ||||| ||| ||||    
T  6495294 gtataatctaggaagaatcaatggatg 6495320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 14935763 - 14935680
Alignment:
Q  17 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||    
T  14935763 atgaaggggcttgaggatttgacacattggattggtacaaatttttttgccatttgtttcttcccatttgtatattattaagat 14935680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 6494990 - 6495048
Alignment:
Q  102 ttcgagagatcactcttgaataata--tttttgtgtttttaaggtttcgagaaataact 158  Q
    |||||||||||||||| ||||||||  ||||| |||||| ||||||| |||||||||||    
T  6494990 ttcgagagatcactctcgaataatatttttttatgttttaaaggttttgagaaataact 6495048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 1062030 - 1062113
Alignment:
Q  17 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1062030 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttgctatttgtttcttcccatttgtatattattaagat 1062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 31606081 - 31606015
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||  ||||| |||||| |||||| | | ||| ||||||||||||||||||||    
T  31606081 tttgacacattggattgaagcaaattttttttctatttatgttttcacatttgtatattattaagat 31606015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 31954085 - 31954151
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    ||||||| |||||| ||||||||||   ||| ||||||||  |||| ||||||||||||||||||||    
T  31954085 tttgacatattggactggtgcaaaaaaatttcctatttgtggcttcacatttgtatattattaagat 31954151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 34024379 - 34024300
Alignment:
Q  17 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattatta 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34024379 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttgctatttgtttcttcccatttgtatattatta 34024300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 12633055 - 12633121
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    ||||||||||| |||||  ||||| |||||| |||||||| ||||| ||||||||||||||||||||    
T  12633055 tttgacacattagattgaagcaaatttttttcctatttgtgtcttcacatttgtatattattaagat 12633121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 34977357 - 34977280
Alignment:
Q  17 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34977357 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttgctatttgtttcttcccatttgtatattat 34977280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 26125170 - 26125103
Alignment:
Q  34 tttgacacattggattggtgcaaaatt-ttttactatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||| |||||||| |||| ||||||||  |||| ||||||||||||||||||||    
T  26125170 tttgacacattggattggggcaaaatttttttcctatttgtagcttcacatttgtatattattaagat 26125103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 25571937 - 25571870
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttac-tatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||| ||||| |||||| | |||||||  |||| ||||||||||||||||||||    
T  25571937 tttgacacattggattggggcaaattttttttcctatttgtagcttcacatttgtatattattaagat 25571870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 26006405 - 26006338
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttac-tatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||| ||||| |||||| | |||||||  |||| ||||||||||||||||||||    
T  26006405 tttgacacattggattggggcaaattttttttcctatttgtagcttcacatttgtatattattaagat 26006338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 20087640 - 20087557
Alignment:
Q  17 atgaaggggcttgaggatttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  20087640 atgaagaggcttgaggatgtgacacattggattggtgcaaatttttttcctatttgtttcttcacatttgtatattattaagat 20087557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 45291677 - 45291743
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttactatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||  |||| ||||||| |||||||| ||||| ||||||||||||||||||||    
T  45291677 tttgacacattggattgaagcaatattttttcctatttgtgtcttcacatttgtatattattaagat 45291743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 23362990 - 23362923
Alignment:
Q  34 tttgacacattggattggtgcaaaattttttac-tatttgtttcttcccatttgtatattattaagat 100  Q
    |||||||||||||||||||||||  |||||| | ||||||| ||||  ||||||||||||||||||||    
T  23362990 tttgacacattggattggtgcaatttttttttcctatttgtgtctttacatttgtatattattaagat 23362923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University