View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5628_low_4 (Length: 421)

Name: NF5628_low_4
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5628_low_4
NF5628_low_4
[»] scaffold0026 (3 HSPs)
scaffold0026 (16-421)||(102076-102482)
scaffold0026 (328-421)||(100312-100405)
scaffold0026 (121-216)||(100087-100182)
[»] chr4 (6 HSPs)
chr4 (75-421)||(25847805-25848164)
chr4 (328-421)||(25849782-25849875)
chr4 (121-175)||(25845792-25845846)
chr4 (336-413)||(25845579-25845656)
chr4 (122-216)||(25850011-25850105)
chr4 (21-53)||(25848164-25848196)


Alignment Details
Target: scaffold0026 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 102076 - 102482
Alignment:
Q  16 aaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacatggaagagaacactgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  102076 aaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacatggaagagaacacagg 102175  T
Q  116 cagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaa 215  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  102176 cagttgtttcaccgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaa 102275  T
Q  216 gtcatcattattaactttttcaactcttggtttgtttcctg-aaaaaatttcatttaggcttgtattatatacactattatttaacacaacattattttt 314  Q
    ||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  102276 gtcattagtattaactttttcaactcttggtttgtttcctgaaaaaaaattcatttaggcttgtattatatacactattatttaacacaacattattttt 102375  T
Q  315 gaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  102376 gaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaat 102475  T
Q  415 cctaagc 421  Q
    |||||||    
T  102476 cctaagc 102482  T

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Target: scaffold0026; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 100312 - 100405
Alignment:
Q  328 tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagc 421  Q
    |||| |||||||||  | |||||||||||||||||||| ||| | || |||||||||| |||||||||||| |||||||| || ||||||||||    
T  100312 tgacttgttagaatactggagattgctccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagc 100405  T

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Target: scaffold0026; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 100087 - 100182
Alignment:
Q  121 gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag 216  Q
    ||||||| || || ||||| ||||||||||| || |||||||||||||| ||||| || || |  || |||||||||||||||||||||| |||||    
T  100087 gtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaag 100182  T

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Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 75 - 421
Target Start/End: Complemental strand, 25848164 - 25847805
Alignment:
Q  75 tattattcttaatcagcagttaacatggaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaaga 174  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25848164 tattattcttaatcagcagttaacatggaagagaacacaggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagt 25848065  T
Q  175 acaactcagaagatctgagtctcaagtttttcaagaggtaagtca----------tcattattaactttttcaactcttggtttgtttcctg------aa 258  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||          | |||||||||||||||||||||||||||||||  ||      ||    
T  25848064 acaactctggagatctgagtctcaagtttttcaagaagtaagtcattaatttcatttattattaactttttcaactcttggtttgttttatgatgaaaaa 25847965  T
Q  259 aaaatttcatttaggcttgtattatatacactattatttaacacaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccac 358  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||  |||||||||||||||    
T  25847964 aaaaattcatttaggcttgtaatatatacactattatttaactcaacattatttttg---aattgattatgacatgttagaatccttgagattgctccac 25847868  T
Q  359 cagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagc 421  Q
    ||||||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  25847867 cagctaagcaattgttctcattcttaaaagattcaaatgttccattggagcacaatcctaagc 25847805  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 25849875 - 25849782
Alignment:
Q  328 tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagc 421  Q
    |||| |||||||||  | |||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||    
T  25849875 tgacttgttagaatactggagattgctccaccagctaagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaagc 25849782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 25845846 - 25845792
Alignment:
Q  121 gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaa 175  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  25845846 gtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaa 25845792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 25845656 - 25845579
Alignment:
Q  336 tagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaa 413  Q
    |||||| ||||||||||||||| ||||| |  |||| ||||||||||| | ||||||||| |||||||||||| ||||    
T  25845656 tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagaaaaa 25845579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 25850105 - 25850011
Alignment:
Q  122 tttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag 216  Q
    |||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| || ||    || ||||||||||||||||||| || |||||    
T  25850105 tttcacagaagagcaagaagctctagtggtaaagtcatggaacgcaatgaagaataattcttgtgacctgagtctcaagtttttcacgaagtaag 25850011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 25848196 - 25848164
Alignment:
Q  21 ctgtaccatagcacaagctacaaaattaacaat 53  Q
    |||||||||||||||||||||||||| ||||||    
T  25848196 ctgtaccatagcacaagctacaaaatcaacaat 25848164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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