View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5628_low_5 (Length: 414)
Name: NF5628_low_5
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628_low_5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 136 - 414
Target Start/End: Original strand, 46690718 - 46690999
Alignment:
| Q |
136 |
atatgtctaaatatttatcttcattcat-attttgtccggagtttctcccactcgtacactttgttcatattaaaagctgcatttgtccggaaccttaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46690718 |
atatgtctaaatatttatcttcattcatgattgtgtccggagtttctcccactagtacactttgttcatattaaaagctgcatttgtccggaaccttaaa |
46690817 |
T |
|
| Q |
235 |
tatttttccgattgccgtctttttgggacattgaccaggaatataatggtaaaaagacttttccatcttattagacttgaaagttcaaa-gaacacactg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46690818 |
tatttttccgattgccgtctttttgggacattgaccaggaatacaatggtaaaaagacttttccatcttattagacttgaaagttcaaaggaacacactg |
46690917 |
T |
|
| Q |
334 |
ccaaacaaatcaccaccttcatattgttaacaatatgcaggattattgtaaggagta-ccccccgagtgggtctaaaattta |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46690918 |
ccaaacaaatcaccaccttcatattgttaacaatatgcaggattaatgtaaggagtacccccccgagtgggtctaaaattta |
46690999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 46690589 - 46690633
Alignment:
| Q |
7 |
atacaaccgcaaatgataaatatttaagcacatttatatcaaatg |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46690589 |
atacaaccgcaaatgataaatatttaagcacattcatatcaaatg |
46690633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29407686 - 29407735
Alignment:
| Q |
1 |
ctatagatacaaccgcaaatgataaatatttaagcacatttatatcaaat |
50 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||| | ||||||| |
|
|
| T |
29407686 |
ctatagatacaaccacaaatgataaatatttgaacacattcacatcaaat |
29407735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University