View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5628_low_9 (Length: 271)
Name: NF5628_low_9
Description: NF5628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5628_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 42125670 - 42125929
Alignment:
| Q |
12 |
agaacctgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatg |
111 |
Q |
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| T |
42125670 |
agaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatg |
42125769 |
T |
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| Q |
112 |
gtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaagaaccatg |
211 |
Q |
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| T |
42125770 |
gtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaagaaccatg |
42125869 |
T |
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| Q |
212 |
tatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
271 |
Q |
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| T |
42125870 |
tatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
42125929 |
T |
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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 24928976 - 24929134
Alignment:
| Q |
19 |
gtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatggtagcat |
118 |
Q |
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||||||| | ||||||| ||||| ||||||||||| || ||||||| ||||||||||| ||||| |||||| | |||||||||||||||||||||| |
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| T |
24928976 |
gtgagagcgatgagtattagaccgtgaagcaagtaggcgatggtaaatgtaatggcaaaggtgatggggtttgatgggacttcagaaaacatggtagcat |
24929075 |
T |
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| Q |
119 |
atgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
177 |
Q |
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| T |
24929076 |
atgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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