View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629-Insertion-1 (Length: 115)
Name: NF5629-Insertion-1
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 4e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 13847555 - 13847662
Alignment:
| Q |
8 |
aacatgaaactgagacccacttaaaatttaagacatattagggcttaaaatttaaagggtctaccccaacggttttgggtccccttagggtaacttacat |
107 |
Q |
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| T |
13847555 |
aacatgaaactgagacccacttaaaatttaaggcaaagtagtgcttaaaatttaaagggtctaccccaacggttttgggtccccttagggtaacttacat |
13847654 |
T |
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| Q |
108 |
tcgatata |
115 |
Q |
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| T |
13847655 |
tcgatata |
13847662 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 13836286 - 13836398
Alignment:
| Q |
8 |
aacatgaaactgagacccacttaaaatttaagacatattagggcttaaaatttaaagggtctaccccaacggttttggg------tccccttagggtaac |
101 |
Q |
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|||||||||||||||||||| ||||||||||| || | ||| ||||||||||||||||||||||||||||| ||||||| | ||||| ||||||| |
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| T |
13836286 |
aacatgaaactgagacccacctaaaatttaaggcaaagtagtgcttaaaatttaaagggtctaccccaacgattttggggtaattttcccttggggtaac |
13836385 |
T |
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| Q |
102 |
ttacattcgatat |
114 |
Q |
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| T |
13836386 |
ttacattcgatat |
13836398 |
T |
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