View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629-Insertion-2 (Length: 1100)
Name: NF5629-Insertion-2
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 8 - 806
Target Start/End: Complemental strand, 7332266 - 7331466
Alignment:
| Q |
8 |
gtaacaaacatcatcctgaaagcaagaaagccctgcatcatcctttatgtcatcatatcatacaaaaaaggcatgcatacaagaagggtggcggggaaag |
107 |
Q |
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| T |
7332266 |
gtaacaaacatcatcctgaaagcaagaaagccctgcaccatcccttatgtcatcatatcatacaaaaaaggcatgcatacaagaagggtggcggggaaag |
7332167 |
T |
|
| Q |
108 |
aagtgcttcaggttagtatacattttcgcatct-gttgttacgccactttactatgtatatgttagtttctaaaatatctccgcaatcttcatttggtaa |
206 |
Q |
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| T |
7332166 |
aagtgcttcaggttagtatacattttcgcatctcgtcgttacgccactttactatgtatatgttagtttctaaaatatctccgcaatcttcatttggtaa |
7332067 |
T |
|
| Q |
207 |
acggcgtgcacaatgtgatgattctacgtcaccgactgcattacatttttattattcgagcttagggtttacgaattacaacttttgtttaaatcttgac |
306 |
Q |
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| T |
7332066 |
aaggtgtgcacaatgtgatgattctacgtcaccgacttcattacatttttattattcgaccttagggtttacaaattacaacttttgtttaaatcttgac |
7331967 |
T |
|
| Q |
307 |
ctacttgatcaaccaaacaagaacctctattaccacaatcatatttaagtaaatttactaatgtaaaattagttacttgtttaaataagtatgataacat |
406 |
Q |
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| T |
7331966 |
ctacttgatcaaccaaacaagaacctctattacctcaatcatatttaagtaaatttactaatgtaaaattagttacttgtttaaataagtatgataacat |
7331867 |
T |
|
| Q |
407 |
tttgtttaagtcctttttcttacatccaacatgaaaatgtaacatgttcaatgtgtagaaaattgtgtaggacatattaaatcatcataactctacacta |
506 |
Q |
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| T |
7331866 |
tttgtttaagtcctttttcttacatccaacatgaaaatgtaacatgttcaatgtgtagaaaattgtgtaggacatattaaatcatcataactctacacta |
7331767 |
T |
|
| Q |
507 |
tattaacattacaattagaaattttaatcaaactttagaaaccatctaagtattttctatgtcataaagatgtcacttccttcaaacctcatcacttgat |
606 |
Q |
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| T |
7331766 |
tattaacattacaattagaaattttaatcaaactttagaaaccatctaagtattttctatgtcataaagatgtcacttccttcaaatctcatcacttgat |
7331667 |
T |
|
| Q |
607 |
ctcatttgcaggaactgtacatgcagaaagggatgaagccttctctagtgatgaaaggaagaacctcaaccttgccatattaaaaaatccaaatgtaagt |
706 |
Q |
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| T |
7331666 |
ctcatttgcaggaactgtacatgcagaaagggatgaagccttctctagtgatgaaaggaagaacctcaaccttgccatattaaaaaatccaaatgtaagt |
7331567 |
T |
|
| Q |
707 |
tctccccatcttgttaaattttttccttttctccccattccttacccctcattttctctcctgta--atagagttggtctttccaagttattaattcaaa |
804 |
Q |
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| T |
7331566 |
tctccccatcttgttaaattttttccttttctcccccttccttacccctcattttctctcctgtaatatagagttggtc-ttccaagttattaattcaaa |
7331468 |
T |
|
| Q |
805 |
ta |
806 |
Q |
| |
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|| |
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| T |
7331467 |
ta |
7331466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 863 - 1100
Target Start/End: Complemental strand, 7331410 - 7331179
Alignment:
| Q |
863 |
agtaaatagtccctttgggtccttgaatgtgttaggcattgtcgctaatagttcttcaattcatcaaa-ttacaaacatactcttgattacgtctatagt |
961 |
Q |
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| T |
7331410 |
agtaaatagtccctttgg-tccttgaatgtgttaggcattgtcgcta-tagtccttcaattcatcaaaattacaaacatattcttgattacgtctatagt |
7331313 |
T |
|
| Q |
962 |
tagttaatttaatcctcaaatggtgttttacataagttagttagtccttaaatggttaatttatttagtcaagattgatccatcaaattactaacaaaat |
1061 |
Q |
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| T |
7331312 |
tagttaatttaatcctcaaat-gtgttttacattagttagttagtccttaaat-gttaatttaattagtc-agattgatccatcaaattactaacaaaat |
7331216 |
T |
|
| Q |
1062 |
ataaactcaaggatgtattttgtccatttcgatacattt |
1100 |
Q |
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| T |
7331215 |
ataaactcaaggatgta-tttgt-catttcgatacattt |
7331179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 34412159 - 34412220
Alignment:
| Q |
239 |
cgactgcattacatttttattattcgagcttagggtttacgaattacaacttttgtttaaat |
300 |
Q |
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| T |
34412159 |
cgactgcaatacctttctattattcaagcttagggtttacagattacaatttgtgtttaaat |
34412220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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