View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_high_1 (Length: 809)

Name: NF5629_high_1
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_high_1
NF5629_high_1
[»] chr5 (1 HSPs)
chr5 (13-791)||(5428539-5429325)


Alignment Details
Target: chr5 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 13 - 791
Target Start/End: Complemental strand, 5429325 - 5428539
Alignment:
Q  13 aatataatggacataaagtcatggtgacnnnnnnnggactcaaagtcaatataaacatacaaattaaatcaagggaaaaaa--taaataattaagaagat 110  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||    
T  5429325 aatataatggacataaagtcatggtgacttttttttgactcaaagtcaatataaacatacaaattaaatccagggaaaaaaaataaataaataagaagat 5429226  T
Q  111 gataagaaataagaatttcaaaacggagcttttccctctcacatccataaac------catagattttgaaaatgtacaagtaacactgaaaatcacatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  5429225 gataagaaataagaatttcaaaacggagcttttccctctcacatccataaacataaaccatagattttgaaaatgtacaagtaacactgaaaatcacatt 5429126  T
Q  205 cgaagctttcagcaaaaattcacaatggacaagaagctttgttcatctctcaattcttcaccacaagaattcatctctttagccacaaccctaaccttaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429125 cgaagctttcagcaaaaattcacaatggacaagaagctttgttcatctctcaattcttcaccacaagaattcatctctttagccacaaccctaaccttaa 5429026  T
Q  305 aatcctctaaatcctctctcaaaaccctaattcattcaatcaaaccctcttccaatctcatttcttcactccctccctctctctacgaatctatcaccat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  5429025 aatcctctaaatcctctctcaaaaccctaattcattcaatcaaaccctcttccaatctcatttcttctctccctccctctctctacgaatctatcaccac 5428926  T
Q  405 cacaatccaatccttcctcaatcttctcgaattgaacaattccgaaaatccccaaacccctcccaccgccaccctccgtcgctcttcccgcaaaaacacc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5428925 cacaatccaatccttcctcaatcttctcgaattgaacaattccgaaaatccccaaacccctcccaccgccaccctccgtcgctcttcccgcaaaaacacc 5428826  T
Q  505 acctccaccaccgaacccagttcccgatccgatgaaaaacataaacttctcgaaaaacttcaaattctcgctcacattttgttcctatgcgtttcgcatc 604  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5428825 accgccaccaccgaacccagttcccaatccgatgaaaaacataaacttctcgaaaaacttcaaattctcgctcacattttgttcctatgcgtttcgcatc 5428726  T
Q  605 cgagaaaggtttttgatttttctgacttgctacctggagttcaagcattgcatgataatttgattgttttggaagcggattcgattttgtcttctgggat 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5428725 cgagaaaggtttttgatttttctgacttgctacctggagttcaagcattgcatgataatttgattgttttggaagcggattcgattttgtcttctgggat 5428626  T
Q  705 tgagactatatgtgaagaatggtggaaggagaatttaccggagcgcgaatcgttgatttctcagacattaccttttgttctatcaag 791  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5428625 tgagactatatgtgaagaatggtggaaggagaatttaccggagcgcgaatcgttgatttctcagacattaccttttgttctatcaag 5428539  T

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