View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_11 (Length: 457)
Name: NF5629_high_11
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 219 - 440
Target Start/End: Original strand, 6994226 - 6994460
Alignment:
| Q |
219 |
cactgtaaacaagtcgagtcttgtttgtgtttttatgtataaaggttgtaaacatgaaataaatgcaaaaaaccaaactattgatttgtagtaccagtag |
318 |
Q |
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| T |
6994226 |
cactgtaaacaagtcgagtcttgtttgtgtttttatgtataaaggttgtaaacatgaaataaatgcaaaaaaccaaactattgatttgtagtaccagtag |
6994325 |
T |
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| Q |
319 |
aaatttcgtggaattagagtggcttttcaaatttga-------------nnnnnnnnnctttctgcagataaataattggggggtaatgcatgataaatt |
405 |
Q |
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| T |
6994326 |
aaatttcgtggaattagagtggcttttcaaatttgatttttcttttaatttttttcttctttctgcagataaataattggggggtaatgcatgataaatt |
6994425 |
T |
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| Q |
406 |
gatggttgatgaatcaatcaccatctgatgagcac |
440 |
Q |
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| T |
6994426 |
gatgattgatgaatcaatcaccatctgatgagcac |
6994460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 6994018 - 6994174
Alignment:
| Q |
18 |
agggaattggtgggattgaggtagtgcattaattagaggaagagtgtggtagtgttagtgttatgcactcaactgccacaactgccaaaactcaccgaag |
117 |
Q |
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| T |
6994018 |
agggaattggtgggattgaggtagtgcattaattagaggaagagtgtggtagtgttagtgttatgcactcaactgccacaactgccaaaactcaccgaag |
6994117 |
T |
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| Q |
118 |
gagttattaatgcagttttgaattgggaggtggtgatgatgatgattcaagattcaa |
174 |
Q |
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| T |
6994118 |
gagttattaatgcaattttgaattgggaggtggtgatgatgatgattcaagattcaa |
6994174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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